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map multiple pair-end reads file

Status: Open.

#48 In COMBINE-lab/RapMap;

· xiaoyezao opened on Dec 10, 2019

-u always active, unaligned reads cause parse error in samtools

Status: Open.

#47 In COMBINE-lab/RapMap;

· ghost opened on Jun 28, 2019

mateIsFwd never gets a value set for unpaired hits

Status: Open.

#46 In COMBINE-lab/RapMap;

· jenni-westoby opened on Feb 1, 2019

Please support spdlog 1.2

Status: Open.

#44 In COMBINE-lab/RapMap;

· tillea opened on Dec 13, 2018

Any experiences on using RapMap for downstream variant calling

Status: Open.

#43 In COMBINE-lab/RapMap;

· inti opened on Aug 20, 2018

What is the behavior of quasimapping when reads overlap multiple transcripts?

Status: Open.

#42 In COMBINE-lab/RapMap;

· nachocab opened on Jan 23, 2018

Build time tests are failing on mips64el architecture

Status: Open.

#41 In COMBINE-lab/RapMap;

· tillea opened on Jan 22, 2018

Question: Unassigned Reads

Status: Open.

#40 In COMBINE-lab/RapMap;

· Simon-Coetzee opened on Jun 7, 2017

I'm failing to compile release 0.5

Status: Open.

#39 In COMBINE-lab/RapMap;

· darachm opened on Mar 28, 2017

Quasi-mapping and gene fusion detection

Status: Open.

#35 In COMBINE-lab/RapMap;

· tetianakh opened on Nov 7, 2016

Mapping to repetitive regions

Status: Open.

#32 In COMBINE-lab/RapMap;

· mdshw5 opened on Sep 22, 2016

Figure out how to support a BSD or MIT license

Status: Open.

#6 In COMBINE-lab/RapMap;

· rob-p opened on Jul 16, 2015