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Refactor LevelManager and Modularize Hierarchical Entropy Computations

feature requestNew feature or requestNew feature or request

Status: Closed (completed).

Feature

#173 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

Post-v1.0.0 Test Suite Review and Expansion

testing

Status: Closed (completed).

Feature

#142 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

Regression Testing for Entropy Calculations

testing

Status: Closed (completed).

Task

#171 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

Conformational Entropy Changes

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#235 In CCPBioSim/CodeEntropy;

· by ioanaapapa was closed on Feb 2, 2026

Rovibrational Entropy

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

#178 In CCPBioSim/CodeEntropy;

· by ioanaapapa was closed on Feb 2, 2026

[Bug]: Sphinx Docs not currently compatible with Python v3.11

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#268 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 4, 2026

Update CI matrix and documentation for supported Python versions

CI Failure

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 269

#269 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 4, 2026

[Docs]: Improve Getting Started Documentation Flow and Examples

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

Task

#270 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 5, 2026

Improve Getting Started documentation clarity and workflow

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 271

#271 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 5, 2026

Align CodeEntropy with entropy methods used in 2019 paper

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 267

#267 In CCPBioSim/CodeEntropy;

· by jkalayan was closed on Feb 5, 2026

Use MDAnalysis principal_axes() for single-UA molecules to prevent complex axes

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 274

#274 In CCPBioSim/CodeEntropy;

· by jkalayan was closed on Feb 12, 2026

Refactor workflow to DAG architecture with expanded testing, CI modernisation, and validated numerical equivalence

feature requestNew feature or requestNew feature or request

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 281

#281 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

[Docs]: Regenerate Documentation Following Package Refactor

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

Bug

#282 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

Regenerate API documentation and standardise Google-style docstrings

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 283

#283 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 26, 2026

[Feature]: Add automated Conda (Anaconda Org) release to CI pipeline

feature requestNew feature or requestNew feature or request

Status: Closed (completed).

Feature

#284 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

[Docs]: Update Logo File Path Location within docs/conf.py

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

Bug

#285 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

Update Logo File Path Location

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 286

#286 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

Add automated Conda publishing to release workflow

feature requestNew feature or requestNew feature or request

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 287

#287 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

[Bug]: Fix Regular Expression within release workflow

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#289 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

Fix Conda recipe version update in release workflow

bugSomething isn't workingSomething isn't working

CI Failure

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 290

#290 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

[Bug]: Conda release blocked by non-lowercase package name

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#292 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026

Add Conda packaging and automated Anaconda release workflow

bugSomething isn't workingSomething isn't working

CI Failure

Status: Merged (completed).

CCPBioSim/CodeEntropynumber 293

#293 In CCPBioSim/CodeEntropy;

· by harryswift01 was closed on Feb 27, 2026