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Add r-wgcna and r-igraph versions to hash.tsv#4049

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nilchia wants to merge 2 commits into
BioContainers:masterfrom
nilchia:nilchia-patch-1
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Add r-wgcna and r-igraph versions to hash.tsv#4049
nilchia wants to merge 2 commits into
BioContainers:masterfrom
nilchia:nilchia-patch-1

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@nilchia

@nilchia nilchia commented Jul 7, 2026

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@bgruening

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I'm not sure what you want to fix. But those packages do not exist, do they? One is bioconductor?

@nilchia

nilchia commented Jul 7, 2026

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@bgruening The issue with that PR in IUC is that the container is not generated (although it worked last week somehow and the PR passed)

I thought adding it manually here will fix the issue.

they both exist in conda

and I can create a conda env with the same versions.

no not bioconductor. both are CRAN

@bgruening

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Well the error here is:

[Jul 7 09:39:02] SERR yq: Error starting jq: FileNotFoundError: [Errno 2] No such file or directory: 'jq'. Is jq installed and available on PATH?

jq is a missing dependency

Comment thread combinations/hash.tsv Outdated
@nilchia

nilchia commented Jul 7, 2026

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Thanks! @bgruening

Can you please trigger the test?

@nilchia

nilchia commented Jul 7, 2026

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it worked here.
so it will fix the problem with the IUC PR?

@bgruening

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Fix the upstream r packages or add jq to the galaxy wrapper

@nilchia

nilchia commented Jul 7, 2026

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Thank you!

@bgruening bgruening closed this Jul 7, 2026
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2 participants