Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-beh-ephys-analysis Public
AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity - camstim-behavior-processing Public
AllenNeuralDynamics/camstim-behavior-processing’s past year of commit activity - ibl-ephys-alignment-gui Public Forked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
AllenNeuralDynamics/ibl-ephys-alignment-gui’s past year of commit activity - dynamic-foraging-processing-pipeline Public
Pipeline to process dynamic foraging behavior only data acquired on new standard
AllenNeuralDynamics/dynamic-foraging-processing-pipeline’s past year of commit activity - ophys-mfish-dataset-catalog Public
A version-controlled dataset catalog for ophys-mFISH datasets, with one JSON record per dataset for portable access across workstations. Mainly HCR right now.
AllenNeuralDynamics/ophys-mfish-dataset-catalog’s past year of commit activity - hcr-unmix-to-cells Public
A capsule to be run on HCR data after it has been processed by main the pipeline. Can run alternate unmixing strategies and generate cell x gene tables annotated with cell labels (e.g. de novo clustering or taxonomy mapping).
AllenNeuralDynamics/hcr-unmix-to-cells’s past year of commit activity
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