Local access

Written with UV for package management. Activate the UV lock file with

uv init 

uv run --with jupyter jupyter lab

Interactive data access tutorial

Cosyne Data Access - Open with Colab

In the repository for this data access tutorial, there is also

• Preprocessing used to colate the cell types information : preprocessing_celltypes_v1718.ipynb
• Setting up a persistent CAVE token for continued use in google colab : Tutorial_Colab_Persistent_Token.ipynb
• Downloading the synaptic cleft and mesh around the synapse for further analysis : Tutorial_Download_Synapse_Mesh.ipynb
• Programmatic generation and parsing of neuroglancer states : Tutorial_NGLUI.ipynb

Furter documentation

• MICrONS Tutorials : https://tutorial.microns-explorer.org/
• Connectome Annotation Versioning Engine CAVE : https://www.caveconnecto.me/CAVEclient/tutorials/
• Ossify : https://csdashm.com/ossify/