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Releases: ASAP-CRN/spatial-transcriptomics-wf

Spatial Visium Analysis v1.0.1

05 Dec 17:58

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Spaceranger v1.0.0
Counts to adata v1.0.0
QC v1.0.0
Cohort analysis v1.0.1

What's Changed

  • Maintenance updates
  • Choose parameters based on dimensions (i.e., accommodate for small datasets)
  • Clean up adata object after filtering spots per slide, NaNs in spatial coordinates, etc.

Full Changelog: spatial_visium_analysis-v1.0.0...spatial_visium_analysis-v1.0.1

Spatial Visium Analysis v1.0.0

25 Aug 20:08

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Spaceranger v1.0.0
Counts to adata v1.0.0
QC v1.0.0
Cohort analysis v1.0.0

Spatial GeoMx Analysis v1.0.0

25 Aug 20:06

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FASTQ to DCC v1.0.0
DCC to RDS v1.0.0
QC v1.0.0
Process to adata v1.0.0
Cohort analysis v1.0.0