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Output BAM files and output dir from Cell Ranger

Status: Open.

#100 In ASAP-CRN/sc-rnaseq-wf;

· kfang4 opened on Mar 18, 2026

Update Cell Ranger to most recent version and other tools

Status: Open.

#98 In ASAP-CRN/sc-rnaseq-wf;

· kfang4 opened on Mar 6, 2026

Explore long-running tasks in order to reduce runtime for cross-team cohort analysis

Status: Open.

#97 In ASAP-CRN/sc-rnaseq-wf;

· kfang4 opened on Dec 4, 2025

Explore loading adata objects from disk rather than memory

Status: Open.

#95 In ASAP-CRN/sc-rnaseq-wf;

· kfang4 opened on Dec 1, 2025

Explore Cell Ranger options for mulitmodal data (sc + ATAC)

Status: Open.

#93 In ASAP-CRN/sc-rnaseq-wf;

· kfang4 opened on Nov 6, 2025

release v3.0 updates

Status: Open.

#85 In ASAP-CRN/sc-rnaseq-wf;

· ergonyc opened on Apr 15, 2025

metadata "NA" encoding

Status: Open.

#78 In ASAP-CRN/sc-rnaseq-wf;

· ergonyc opened on Nov 14, 2024

Do we do "batch" correction sample-wise or batch-wise?

Status: Open.

#70 In ASAP-CRN/sc-rnaseq-wf;

· ergonyc opened on Nov 7, 2024

scRNAseq "flavors", technology and sc vs sn

Status: Open.

#64 In ASAP-CRN/sc-rnaseq-wf;

· ergonyc opened on Oct 24, 2024

update python env to 3.12

Status: Open.

#61 In ASAP-CRN/sc-rnaseq-wf;

· ergonyc opened on Oct 11, 2024