HanSolo is a program that takes a single or multi fasta file as input and returns a heat map with the sequence GC-frequency and the total GC-content.
In order to run the program packages needs to be installed and the environmant needs to be setup.
Install nextflow acording to https://www.nextflow.io/ Install packages in R; ggplot2, data.table, tidyr and viridis.
Then clone this repository
# Clone the directory to your home directory
git clone ..
cd HanSolo
Run the program:
~/nextflow HanSolo.nf --fasta --working_dir -c HanSolo.config
The heat map is located in the specified working_dir