xenium_cell_segmentation/requirements.txt at main · unikill066/xenium_cell_segmentation · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
altair==5.5.0
attrs==25.3.0
blinker==1.9.0
cachetools==5.5.2
cellpose==4.0.4
certifi==2025.4.26
charset-normalizer==3.4.2
click==8.2.1
contourpy==1.3.2
cycler==0.12.1
fastremap==1.16.1
filelock==3.18.0
fill_voids==2.0.8
fonttools==4.58.2
fsspec==2025.5.1
gitdb==4.0.12
GitPython==3.1.44
idna==3.10
imagecodecs==2025.3.30
imageio==2.37.0
Jinja2==3.1.6
jsonschema==4.24.0
jsonschema-specifications==2025.4.1
kiwisolver==1.4.8
lazy_loader==0.4
MarkupSafe==3.0.2
matplotlib==3.10.3
mpmath==1.3.0
narwhals==1.42.1
natsort==8.4.0
networkx==3.5
numpy==2.3.0
nvidia-cublas-cu12==12.6.4.1
nvidia-cuda-cupti-cu12==12.6.80
nvidia-cuda-nvrtc-cu12==12.6.77
nvidia-cuda-runtime-cu12==12.6.77
nvidia-cudnn-cu12==9.5.1.17
nvidia-cufft-cu12==11.3.0.4
nvidia-cufile-cu12==1.11.1.6
nvidia-curand-cu12==10.3.7.77
nvidia-cusolver-cu12==11.7.1.2
nvidia-cusparse-cu12==12.5.4.2
nvidia-cusparselt-cu12==0.6.3
nvidia-nccl-cu12==2.26.2
nvidia-nvjitlink-cu12==12.6.85
nvidia-nvtx-cu12==12.6.77
opencv-python-headless==4.11.0.86
packaging==24.2
pandas==2.3.0
pillow==11.2.1
protobuf==6.31.1
pyarrow==20.0.0
pydeck==0.9.1
pyparsing==3.2.3
python-dateutil==2.9.0.post0
pytz==2025.2
referencing==0.36.2
requests==2.32.4
roifile==2025.5.10
rpds-py==0.25.1
scikit-image==0.25.2
scipy==1.15.3
segment-anything==1.0
setuptools==80.9.0
six==1.17.0
smmap==5.0.2
streamlit==1.45.1
sympy==1.14.0
tenacity==9.1.2
tifffile==2025.6.11
toml==0.10.2
torch==2.7.1
torchvision==0.22.1
tornado==6.5.1
tqdm==4.67.1
triton==3.3.1
typing_extensions==4.14.0
tzdata==2025.2
urllib3==2.4.0
watchdog==6.0.0
wheel==0.45.1