python-client/templateflow/conf/config.json at 8384c00f7e40c1a6ea6985c9629d045c784162d3 · tsalo/python-client · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
{
    "name": "templateflow",
    "entities": [
        {
            "name": "template",
            "pattern": "[/\\\\]tpl-([a-zA-Z0-9]+)",
            "directory": "{{root}}{template}"
        },
        {
            "name": "cohort",
            "pattern": "[_/\\\\]cohort-(\\d+)",
            "mandatory": false,
            "directory": "{{root}}{template}{cohort}",
            "dtype": "int"
        },
        {
            "name": "resolution",
            "pattern": "[_/\\\\]+res-0*(\\d+)",
            "dtype": "int"
        },
        {
            "name": "density",
            "pattern": "[_/\\\\]+den-([a-zA-Z0-9]+)"
        },
        {
            "name": "atlas",
            "pattern": "[_/\\\\]atlas-([a-zA-Z0-9]+)"
        },
        {
            "name": "segmentation",
            "pattern": "[_/\\\\]seg-([a-zA-Z0-9]+)"
        },
        {
            "name": "scale",
            "pattern": "[_/\\\\]scale-([0-9]+)"
        },
        {
            "name": "roi",
            "pattern": "[_/\\\\]roi-([a-zA-Z0-9]+)"
        },
        {
            "name": "label",
            "pattern": "[_/\\\\]label-([a-zA-Z0-9]+)"
        },
        {
            "name": "desc",
            "pattern": "[_/\\\\]desc-([a-zA-Z0-9]+)"
        },
        {
            "name": "space",
            "pattern": "[_/\\\\]space-([a-zA-Z0-9]+)"
        },
        {
            "name": "from",
            "pattern": "(?:^|_)from-([a-zA-Z0-9+]+).*xfm"
        },
        {
            "name": "to",
            "pattern": "(?:^|_)to-([a-zA-Z0-9+]+).*xfm"
        },
        {
            "name": "mode",
            "pattern": "(?:^|_)mode-([a-zA-Z0-9]+).*xfm"
        },
        {
            "name": "hemi",
            "pattern": "[_/\\\\]hemi-(L|R)"
        },
        {
            "name": "suffix",
            "pattern": "[._]*([a-zA-Z0-9]*?)\\.[^/\\\\]+$"
        },
        {
            "name": "description",
            "pattern": "(.*\\template_description.json)$"
        },
        {
            "name": "extension",
            "pattern": "[._]*[a-zA-Z0-9]*?(\\.[^/\\\\]+)$"
        }
    ],
    "default_path_patterns": [
        "tpl-{template}/template_description.json",
        "tpl-{template}[/cohort-{cohort}]/tpl-{template}[_cohort-{cohort}]_res-{resolution}[_space-{space}][_hemi-{hemi}][_desc-{desc}]_{suffix<T1w|T2w|T1rho|T1map|T2map|T2star|FLAIR|FLASH|PDmap|PD|PDT2|inplaneT[12]|angio>}.{extension<nii|nii\\.gz>}"
    ]
}