FSL-bash-scripts/new_FSL_path at master · stijnimaging/FSL-bash-scripts · GitHub

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#!/bin/bash -p

if [ $# -eq 1 ]; then

	export PATH=$OUR_BASIC_PATH
	if [ $1 -eq 416 ];then
		FSL_version=4.1.6
	elif [ $1 -eq 419 ];then
		FSL_version=4.1.9
	elif [ $1 -eq 504 ];then
		FSL_version=5.0.4
	elif [ $1 -eq 507 ];then
	    FSL_version=5.0.7
	elif [ $1 -eq 5010 ];then
	    FSL_version=5.0.10
	else
		FSL_version=""
	fi

	if [ ! -z $FSL_version ]; then
		FSLDIR=/usr/local/fsl${FSL_version}; export FSLDIR; . ${FSLDIR}/etc/fslconf/fsl.sh; PATH=${FSLDIR}/bin:$PATH; export PATH; echo $FSLDIR

		if [ ! -z $FREESURFER_HOME ]; then
			FS_OVERRIDE=1; source $FREESURFER_HOME/setUpFreeSurfer.sh
		fi
	else
		if [ ! -z $FREESURFER_HOME ]; then
			FS_OVERRIDE=1; source $FREESURFER_HOME/setUpFreeSurfer.sh
		fi

		echo
		echo "******** ERROR: Unknown FSL version supplied (only 416, 419 and 504 are valid) *********"
		echo
	fi

else
	echo "Need one argument (FSL version, e.g., 504)"
fi