-
-
Notifications
You must be signed in to change notification settings - Fork 378
Expand file tree
/
Copy patheight_schools_test.cpp
More file actions
544 lines (517 loc) · 24.9 KB
/
eight_schools_test.cpp
File metadata and controls
544 lines (517 loc) · 24.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
#include <stan/callbacks/json_writer.hpp>
#include <stan/callbacks/stream_writer.hpp>
#include <stan/callbacks/unique_stream_writer.hpp>
#include <stan/callbacks/json_writer.hpp>
#include <stan/math.hpp>
#include <stan/io/array_var_context.hpp>
#include <stan/io/empty_var_context.hpp>
#include <stan/io/json/json_data.hpp>
#include <stan/io/stan_csv_reader.hpp>
#include <stan/services/pathfinder/multi.hpp>
#include <test/test-models/good/services/eight_schools.hpp>
#include <test/unit/services/instrumented_callbacks.hpp>
#include <test/unit/services/util.hpp>
#include <test/unit/services/pathfinder/util.hpp>
#include <gtest/gtest.h>
// Locally tests can use threads but for jenkins we should just use 1 thread
#ifdef LOCAL_THREADS_TEST
auto&& threadpool_init = stan::math::init_threadpool_tbb(LOCAL_THREADS_TEST);
#else
auto&& threadpool_init = stan::math::init_threadpool_tbb(1);
#endif
stan::io::array_var_context init_context() {
std::vector<std::string> names_r{"y", "sigma"};
std::vector<double> values_r{28, 8, -3, 7, -1, 1, 18, 12,
15, 10, 16, 11, 9, 11, 10, 18};
using size_vec = std::vector<size_t>;
std::vector<size_vec> dims_r{size_vec{8}, size_vec{8}};
std::vector<std::string> names_i{"J"};
std::vector<int> values_i{8};
using size_vec = std::vector<size_t>;
std::vector<size_vec> dims_i{size_vec{}};
return stan::io::array_var_context(names_r, values_r, dims_r, names_i,
values_i, dims_i);
}
class ServicesPathfinderEightSchools : public testing::Test {
public:
ServicesPathfinderEightSchools()
: init(init_ss),
diagnostics(
std::unique_ptr<std::stringstream, stan::test::deleter_noop>(
&diagnostic_ss)),
context(init_context()),
model(context, 0, &model_ss) {}
void TearDown() {
diagnostic_ss.str(std::string());
diagnostic_ss.clear();
init_ss.str(std::string());
init_ss.clear();
model_ss.str(std::string());
model_ss.clear();
for (auto& ss : init_streams) {
ss.str(std::string());
ss.clear();
}
parameter.clear();
}
std::stringstream init_ss, diagnostic_ss, model_ss;
stan::callbacks::stream_writer init;
stan::test::in_memory_writer parameter;
stan::callbacks::json_writer<std::stringstream, stan::test::deleter_noop>
diagnostics;
stan::io::array_var_context context;
stan_model model;
static constexpr unsigned int seed = 0;
static constexpr unsigned int stride_id = 1;
static constexpr double init_radius = 3;
static constexpr size_t num_multi_draws = 20000;
static constexpr size_t num_paths = 16;
static constexpr double num_elbo_draws = 1000;
static constexpr double num_draws = 10000;
static constexpr int history_size = 40;
static constexpr double init_alpha = 1;
static constexpr double tol_obj = 1e-12;
static constexpr double tol_rel_obj = 1e15;
static constexpr double tol_grad = 1e-12;
static constexpr double tol_rel_grad = 1e15;
static constexpr double tol_param = 1e-12;
static constexpr int num_iterations = 2000;
static constexpr int refresh = 1;
static constexpr bool save_iterations = false;
std::vector<std::stringstream> init_streams{num_paths};
std::vector<stan::callbacks::stream_writer> init_writers{init_streams.begin(),
init_streams.end()};
};
constexpr std::array param_indices{0, 1, 3, 4, 5, 6, 7, 8, 9, 10,
11, 12, 13, 14, 15, 16, 17, 18, 19, 20};
// TODO: we need to hard code this so that everything is the same between the
// two runs
auto init_init_context() { return stan::io::empty_var_context(); }
TEST_F(ServicesPathfinderEightSchools, multi) {
// bool save_iterations = true;
constexpr bool calculate_lp = true;
constexpr bool resample = true;
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
std::vector<stan::callbacks::writer> single_path_parameter_writer(num_paths);
std::vector<stan::callbacks::json_writer<std::stringstream>>
single_path_diagnostic_writer(num_paths);
std::vector<std::unique_ptr<decltype(init_init_context())>> single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer, parameter,
diagnostics, calculate_lp, resample);
Eigen::MatrixXd param_vals = parameter.get_eigen_state_values();
EXPECT_EQ(param_vals.cols(), 21);
EXPECT_EQ(param_vals.rows(), num_multi_draws);
for (Eigen::Index i = 0; i < num_multi_draws; i++) {
EXPECT_GE(param_vals.col(2)(i), 0);
EXPECT_LE(param_vals.col(2)(i), num_paths);
}
auto param_tmp = param_vals(Eigen::indexing::all, param_indices);
auto mean_sd_pair = stan::test::get_mean_sd(param_tmp);
auto&& mean_vals = mean_sd_pair.first;
auto&& sd_vals = mean_sd_pair.second;
Eigen::RowVectorXd r_mean_vals(20);
r_mean_vals << -17.9537, -47.016, 1.89104, 3.66449, 0.22256, 0.119645,
-0.146812, 0.23633, -0.244868, -0.227134, 0.504507, 0.0476979, 3.66491,
2.57979, 1.21644, 2.81399, 1.53776, 1.39865, 3.99508, 2.41488;
Eigen::RowVectorXd r_sd_vals(20);
r_sd_vals << 4.37932, 2.28608, 1.93964, 4.77042, 0.95799, 0.842812, 0.963455,
0.948548, 1.03149, 0.989, 0.920778, 0.888529, 4.6405, 3.63071, 4.25895,
4.45198, 3.90755, 4.23075, 4.56257, 4.22915;
Eigen::MatrixXd all_mean_vals(3, 20);
all_mean_vals.row(0) = mean_vals;
all_mean_vals.row(1) = r_mean_vals;
all_mean_vals.row(2) = mean_vals - r_mean_vals;
// This samples badly, but is a known issue with initialization.
for (Eigen::Index i = 0; i < all_mean_vals.cols(); i++) {
EXPECT_NEAR(0, all_mean_vals(2, i), 1);
}
Eigen::MatrixXd all_sd_vals(3, 20);
all_sd_vals.row(0) = sd_vals;
all_sd_vals.row(1) = r_sd_vals;
all_sd_vals.row(2) = sd_vals - r_sd_vals;
for (Eigen::Index i = 0; i < all_mean_vals.cols(); i++) {
EXPECT_NEAR(0, all_sd_vals(2, i), 2);
}
}
TEST_F(ServicesPathfinderEightSchools, multi_psis_only_output) {
constexpr bool calculate_lp = true;
constexpr bool resample = true;
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
using stream_writer = stan::callbacks::unique_stream_writer<std::ofstream>;
using string_writer
= stan::callbacks::unique_stream_writer<std::stringstream>;
std::vector<stream_writer> single_path_parameter_writer(num_paths);
string_writer parameter_writer{std::make_unique<std::stringstream>(), "# "};
std::vector<stan::callbacks::json_writer<std::stringstream>>
single_path_diagnostic_writer(num_paths);
std::vector<std::unique_ptr<decltype(init_init_context())>> single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer,
parameter_writer, diagnostics, calculate_lp, resample);
string_writer parameter_writer2{std::make_unique<std::stringstream>(), "# "};
// Check we get the same result running multiple times
{
std::stringstream diagnostic_ss;
stan::callbacks::json_writer<std::stringstream, stan::test::deleter_noop>
diagnostics{
std::unique_ptr<std::stringstream, stan::test::deleter_noop>(
&diagnostic_ss)};
std::vector<std::unique_ptr<decltype(init_init_context())>>
single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
std::unique_ptr<std::ostream> empty_ostream{nullptr};
stan::test::test_logger logger(std::move(empty_ostream));
std::vector<std::stringstream> init_streams{num_paths};
std::vector<stan::callbacks::stream_writer> init_writers{
init_streams.begin(), init_streams.end()};
int return_code2 = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer,
parameter_writer2, diagnostics, calculate_lp, resample);
EXPECT_EQ(return_code, return_code2);
}
Eigen::IOFormat CommaInitFmt(Eigen::StreamPrecision, 0, ", ", ", ", "\n", "",
"", "");
std::stringstream tmp_stream1;
std::stringstream tmp_stream2;
auto&& streamer1 = parameter_writer.get_stream();
auto&& streamer2 = parameter_writer2.get_stream();
auto stan_data1 = stan::io::stan_csv_reader::parse(streamer1, &tmp_stream1);
auto stan_data2 = stan::io::stan_csv_reader::parse(streamer2, &tmp_stream2);
auto&& param_vals = stan_data1.samples;
auto&& param_vals2 = stan_data2.samples;
auto check_output = [](const auto& str, const auto& stan_data) {
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinders)") == std::string::npos);
EXPECT_FALSE(str.rfind("(PSIS)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_multi_draws);
EXPECT_EQ(stan_data.samples.cols(), 21);
};
check_output(streamer1.str(), stan_data1);
check_output(streamer2.str(), stan_data2);
for (int j = 0; j < 21; ++j) {
Eigen::VectorXd param_vals_col = param_vals.col(j);
Eigen::VectorXd param_vals2_col = param_vals2.col(j);
std::sort(param_vals_col.data(),
param_vals_col.data() + param_vals_col.size());
std::sort(param_vals2_col.data(),
param_vals2_col.data() + param_vals2_col.size());
for (Eigen::Index i = 0; i < num_multi_draws; i++) {
EXPECT_EQ(param_vals_col(i), param_vals2_col(i))
<< "param_vals(" << i << "," << j << "): " << param_vals_col(i)
<< " != " << param_vals2_col(i);
}
}
}
TEST_F(ServicesPathfinderEightSchools, multi_and_single_psis_output) {
constexpr bool calculate_lp = true;
constexpr bool resample = true;
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
using unique_string_writer
= stan::callbacks::unique_stream_writer<std::stringstream>;
std::vector<unique_string_writer> single_path_parameter_writer;
unique_string_writer parameter_writer{std::make_unique<std::stringstream>(),
"# "};
for (int i = 0; i < num_paths; ++i) {
single_path_parameter_writer.emplace_back(
std::make_unique<std::stringstream>(), "# ");
}
std::vector<stan::callbacks::json_writer<std::stringstream>>
single_path_diagnostic_writer(num_paths);
std::vector<std::unique_ptr<decltype(init_init_context())>> single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer,
parameter_writer, diagnostics, calculate_lp, resample);
{
auto&& streamer = parameter_writer.get_stream();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
auto str = streamer.str();
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinders)") == std::string::npos);
EXPECT_FALSE(str.rfind("(PSIS)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_multi_draws);
EXPECT_EQ(stan_data.samples.cols(), 21);
}
int sentinal = 1;
for (auto&& single_param : single_path_parameter_writer) {
auto&& streamer = single_param.get_stream();
auto str = streamer.str();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinder)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_draws);
EXPECT_EQ(stan_data.samples.cols(), 21);
EXPECT_TRUE((stan_data.samples.col(2).array() == sentinal).all())
<< "path_id: " << stan_data.samples.col(2)(0)
<< "sentinal: " << sentinal << std::endl;
;
sentinal++;
}
}
TEST_F(ServicesPathfinderEightSchools, multi_nopsis_only_output) {
constexpr bool calculate_lp = false;
constexpr bool resample = false;
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
using stream_writer = stan::callbacks::unique_stream_writer<std::ofstream>;
using string_writer
= stan::callbacks::unique_stream_writer<std::stringstream>;
std::vector<stream_writer> single_path_parameter_writer(num_paths);
string_writer parameter_writer{std::make_unique<std::stringstream>(), "# "};
std::vector<stan::callbacks::json_writer<std::stringstream>>
single_path_diagnostic_writer(num_paths);
std::vector<std::unique_ptr<decltype(init_init_context())>> single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer,
parameter_writer, diagnostics, calculate_lp, resample);
auto str = parameter_writer.get_stream().str();
{
auto&& streamer = parameter_writer.get_stream();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinders)") == std::string::npos);
EXPECT_TRUE(str.rfind("(PSIS)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_draws * num_paths);
EXPECT_EQ(stan_data.samples.cols(), 21);
}
}
TEST_F(ServicesPathfinderEightSchools, multi_and_single_nopsis_output) {
constexpr bool calculate_lp = false;
constexpr bool resample = false;
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
using unique_string_writer
= stan::callbacks::unique_stream_writer<std::stringstream>;
std::vector<unique_string_writer> single_path_parameter_writer;
unique_string_writer parameter_writer{std::make_unique<std::stringstream>(),
"# "};
for (int i = 0; i < num_paths; ++i) {
single_path_parameter_writer.emplace_back(
std::make_unique<std::stringstream>(), "# ");
}
std::vector<stan::callbacks::json_writer<std::stringstream>>
single_path_diagnostic_writer(num_paths);
std::vector<std::unique_ptr<decltype(init_init_context())>> single_path_inits;
for (int i = 0; i < num_paths; ++i) {
single_path_inits.emplace_back(
std::make_unique<decltype(init_init_context())>(init_init_context()));
}
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_multi(
model, single_path_inits, seed, stride_id, init_radius, history_size,
init_alpha, tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param,
num_iterations, num_elbo_draws, num_draws, num_multi_draws, num_paths,
save_iterations, refresh, callback, logger, init_writers,
single_path_parameter_writer, single_path_diagnostic_writer,
parameter_writer, diagnostics, calculate_lp, resample);
{
auto str = parameter_writer.get_stream().str();
auto&& streamer = parameter_writer.get_stream();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinders)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_TRUE(str.rfind("(PSIS)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_draws * num_paths);
EXPECT_EQ(stan_data.samples.cols(), 21);
}
int sentinal = 1;
for (auto&& single_param : single_path_parameter_writer) {
auto&& streamer = single_param.get_stream();
auto&& str = streamer.str();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinder)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_TRUE(str.find("(PSIS)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_draws);
EXPECT_EQ(stan_data.samples.cols(), 21);
EXPECT_TRUE((stan_data.samples.col(2).array() == sentinal).all());
sentinal++;
}
}
TEST_F(ServicesPathfinderEightSchools, single_output) {
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
stan::test::mock_callback callback;
using unique_string_writer
= stan::callbacks::unique_stream_writer<std::stringstream>;
unique_string_writer parameter_writer{std::make_unique<std::stringstream>(),
"# "};
int return_code = stan::services::pathfinder::pathfinder_lbfgs_single(
model, context, seed, stride_id, init_radius, history_size, init_alpha,
tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param, num_iterations,
num_elbo_draws, num_draws, save_iterations, refresh, callback, logger,
init, parameter_writer, diagnostics);
auto str = parameter_writer.get_stream().str();
{
auto&& streamer = parameter_writer.get_stream();
std::stringstream tmp_stream;
auto stan_data = stan::io::stan_csv_reader::parse(streamer, &tmp_stream);
EXPECT_FALSE(str.rfind("Elapsed Time:") == std::string::npos);
EXPECT_FALSE(str.rfind("(Pathfinder)") == std::string::npos);
EXPECT_TRUE(str.rfind("(PSIS)") == std::string::npos);
EXPECT_FALSE(str.rfind("(Total)") == std::string::npos);
EXPECT_EQ(stan_data.samples.rows(), num_draws);
EXPECT_EQ(stan_data.samples.cols(), 21);
}
}
TEST_F(ServicesPathfinderEightSchools, single) {
std::unique_ptr<std::ostream> empty_ostream(nullptr);
stan::test::test_logger logger(std::move(empty_ostream));
stan::test::mock_callback callback;
int return_code = stan::services::pathfinder::pathfinder_lbfgs_single(
model, context, seed, stride_id, init_radius, history_size, init_alpha,
tol_obj, tol_rel_obj, tol_grad, tol_rel_grad, tol_param, num_iterations,
num_elbo_draws, num_draws, save_iterations, refresh, callback, logger,
init, parameter, diagnostics);
Eigen::IOFormat CommaInitFmt(Eigen::StreamPrecision, 0, ", ", ", ", "\n", "",
"", "");
Eigen::MatrixXd param_vals = parameter.get_eigen_state_values();
for (auto&& x_i : param_vals.col(2)) {
EXPECT_EQ(x_i, stride_id);
}
auto param_tmp = param_vals(Eigen::indexing::all, param_indices);
auto mean_sd_pair = stan::test::get_mean_sd(param_tmp);
auto&& mean_vals = mean_sd_pair.first;
auto&& sd_vals = mean_sd_pair.second;
Eigen::MatrixXd r_answer = stan::test::eight_schools_r_answer();
Eigen::MatrixXd r_constrainted_draws_mat(20, 100);
{
stan::rng_t rng = stan::services::util::create_rng(0123, 0);
auto fn = [&model = ServicesPathfinderEightSchools::model](auto&& u) {
return -model.log_prob_propto_jacobian(u, 0);
};
Eigen::VectorXd unconstrained_draws;
Eigen::VectorXd constrained_draws1;
Eigen::VectorXd constrained_draws2(20);
Eigen::VectorXd lp_approx_vec(100);
// Results are from Lu's R code
lp_approx_vec << -12.0415891980758, -14.6692843779338, -13.4109656242788,
-12.227160804752, -10.8994669454787, -13.9464452858378,
-17.7039786093493, -11.3031695577237, -12.1849838459723,
-14.2633656680052, -13.7685697251323, -11.0849801402767,
-10.8285877691116, -12.3078922043268, -18.4862079401751,
-14.878979392217, -13.9884320991932, -15.7658450000531,
-13.5906482194447, -12.9120430284407, -18.2651279783073,
-13.0161106634425, -14.6633050842275, -15.708171891455,
-13.8002820377402, -13.4484536964903, -12.9558192824891,
-18.030159468489, -12.436042490926, -12.7938205793498,
-15.4295215357008, -11.7361108739125, -14.1692223330973,
-12.4698540687768, -16.2225112479695, -14.6021099557893,
-15.4163482862364, -11.9367428966647, -15.6987363918049,
-13.2541127046878, -13.395247477582, -13.7297660475934,
-15.5881489265056, -13.5906575138153, -19.5817805593569,
-15.3874299612537, -14.7803838914721, -13.5453155677371,
-18.5256438441971, -21.7907055918946, -13.9876362902857,
-14.3584339685507, -12.3086782261963, -13.4520009680182,
-13.2565205387879, -14.8449352555917, -11.7995060730947,
-16.1673766763038, -13.8230070576965, -14.4323461406136,
-14.5139646362747, -15.7152727007162, -16.0978882701874,
-12.8437110780737, -16.1267323384854, -17.5695117515445,
-15.7244669033694, -14.318592510172, -13.6331931944301,
-15.3973326320899, -16.6577158373945, -17.0600363400148,
-13.3516348546988, -12.2942663317071, -19.1148011460955,
-17.6392635944591, -13.3379766819778, -13.8803098238232,
-12.5059777414601, -15.8823434809178, -14.5040005356544,
-17.9707192175747, -14.3296312988667, -15.9246135209721,
-20.6431707513941, -14.2483182078639, -12.9012691966467,
-11.8312105455114, -14.2360469104402, -14.1732053430172,
-12.7669225560584, -14.3443242235104, -14.4185150275073,
-16.9557240942739, -14.2902638224899, -13.2814736915503,
-20.7083049704887, -17.6192198763631, -10.705036567492,
-12.1087056948567;
for (Eigen::Index i = 0; i < r_answer.cols(); ++i) {
unconstrained_draws = r_answer.col(i);
model.write_array(rng, unconstrained_draws, constrained_draws1);
constrained_draws2.tail(18) = constrained_draws1;
constrained_draws2(0) = lp_approx_vec(i);
constrained_draws2(1) = -fn(unconstrained_draws);
r_constrainted_draws_mat.col(i) = constrained_draws2;
}
}
Eigen::RowVectorXd mean_r_vals
= r_constrainted_draws_mat.rowwise().mean().transpose();
Eigen::RowVectorXd sd_r_vals
= (((r_constrainted_draws_mat.colwise() - mean_r_vals.transpose())
.array()
.square()
.matrix()
.rowwise()
.sum()
.array()
/ (r_constrainted_draws_mat.cols() - 1))
.sqrt())
.transpose()
.eval();
Eigen::MatrixXd all_mean_vals(3, 20);
all_mean_vals.row(0) = mean_vals;
all_mean_vals.row(1) = mean_r_vals;
all_mean_vals.row(2) = mean_vals - mean_r_vals;
Eigen::MatrixXd all_sd_vals(3, 20);
all_sd_vals.row(0) = sd_vals;
all_sd_vals.row(1) = sd_r_vals;
all_sd_vals.row(2) = sd_vals - sd_r_vals;
// Single pathfinder can do very badly for eight schools
for (Eigen::Index i = 2; i < all_mean_vals.cols(); i++) {
EXPECT_NEAR(0, all_mean_vals(2, i), 3);
}
for (Eigen::Index i = 2; i < all_sd_vals.cols(); i++) {
EXPECT_NEAR(0, all_sd_vals(2, i), 6);
}
}