python-app.yaml

name: Tests

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

env:
  NUMBA_DISABLE_JIT: 1
  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true

jobs:
  build:
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12", "3.13"]

    steps:
      - name: Checkout_repository
        uses: actions/checkout@v6

      - name: Setup_micromamba
        uses: mamba-org/setup-micromamba@v3
        with:
          environment-file: .github/environment.yaml
          environment-name: test-environment
          init-shell: bash

      - name: Install Python ${{ matrix.python-version }}
        shell: bash -l {0}
        run: |
          micromamba install -n test-environment python=${{ matrix.python-version }} -y

      - name: Install lint dependencies
        shell: bash -l {0}
        run: |
          python -m pip install flake8

      - name: Lint with flake8
        shell: bash -l {0}
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics

          # exit-zero treats all errors as warnings
          flake8 . \
            --count \
            --exit-zero \
            --max-complexity=10 \
            --max-line-length=127 \
            --statistics

      - name: Build and test
        shell: bash -l {0}
        env:
          NUMBA_DISABLE_JIT: 1
        run: |
          python -m pip install build pytest pytest-cov

          python -m build
          python -m pip install dist/*.whl

          pytest \
            --cov=pycoxmunk \
            pycoxmunk/Tests/ \
            --cov-report=xml

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v7
        with:
          files: ./coverage.xml
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: unittests
          fail_ci_if_error: true
          verbose: true