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‎app/controllers/application_controller.rb‎

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@@ -36,6 +36,28 @@ class ApplicationController < ActionController::Base
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}
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# GET /
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def main2
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@services = {
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validly_published: Name.where(status: 15).order(validated_at: :desc),
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names: Name.all_public.order(created_at: :desc),
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publications: Publication.all.order(journal_date: :desc),
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register_lists: Registers.where(validated: true).order(updated_at: :desc),
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genomes: Genome.all.order(created_at: :desc),
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strains: Strain.all.order(created_at: :desc)
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}
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@display = {
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validly_published:
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[:abbr_name, [:names_path, sort: :date, status: :SeqCode]]
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names: [:abbr_name, [:names_path, sort: :date]]
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publications:
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[:short_citation, [:publications_path, sort: :date]]
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register_lists:
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[:acc_url, [:registers_path, status: :validated]]
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genomes: [:text, :genomes_path]
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strains: [:title, :strains_path]
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}
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end
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def main
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@publications = Publication.all.order(journal_date: :desc)
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@authors = Author.all.order(created_at: :desc)

‎app/models/strain.rb‎

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@@ -41,6 +41,10 @@ def title(prefix = nil)
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'%ssc|%07i' % [prefix, id]
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end
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def text
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title('')
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end
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def seqcode_url(protocol = true)
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"#{'https://' if protocol}seqco.de/s:#{id}"
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end

‎app/views/application/_news.html.erb‎

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<% all ||= false %>
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<% ht = all ? 'h1' : 'h2' %>
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<div class="container news">
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<div class="row mx-1">
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<div class="col-lg-12 text-center">
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<h1>SeqCode News</h1>
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<<%= ht %>>SeqCode News</<%= ht %>>
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<hr/>
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</div>
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<dl class="col-lg-12">

‎app/views/application/main2.html.erb‎

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<%#
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<div class="alert alert-info">
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<h3>Maintenance 02/Dec/2025</h3>
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The SeqCode Registry will undergo a service window on Tuesday, the 2nd
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December, 2025 the entire day (CET). We apologize for any issues this may
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cause.
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</div>
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%>
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<% if user_signed_in? %>
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<div id="notification-permission" class="text-center" style="display: none;">
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<%= button_tag(class: 'btn btn-primary', id: 'enable') do %>
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<%= fa_icon('bell') %>
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Enable notifications
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<% end %>
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</div>
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<% end %>
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<div class="main-page-box text-center bg-light rounded-lg border my-5 mx-3 p-5">
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<h1>SeqCode Registry</h1>
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<p class="lead">
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Part of the
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<a href="https://isme-microbes.org/seqcode-initiative"
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target=_blank>SeqCode initiative</a>, a path forward for naming
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the uncultivated
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</p>
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<hr/>
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<div class="container p-0">
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<ul class="row nav nav-pills" role="tablist" id="lead-tab">
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<%
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tabs = {
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register: ['pen-fancy', 'Register New Entries', false],
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search: [
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'search',
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'Search and Explore',
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true
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],
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read: ['book-reader', 'Read and Learn More', false]
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}
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%>
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<% tabs.each do |k, v| %>
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<li class="col-md-4 px-3 nav-item" role="presentation">
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<%= link_to(
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"##{k}-content", id: "#{k}-tab",
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data: { toggle: 'pill' }, # role: 'tab',
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aria: { controls: "#{k}-content", selected: v[2] },
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class: 'p-3 w-100 h-100 rounded border w-100 text-primary ' \
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'border-primary nav-link main-tab-button ' \
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'' + (v[2] ? 'active' : '')
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) do %>
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<%= fa_icon(v[0], style: 'font-size: 300%;', class: 'mb-3') %><br/>
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<b><%= v[1] %></b>
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<% end %>
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</li>
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<% end %>
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</ul>
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</div>
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<!-- Dynamic content -->
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<div class="tab-content mt-0" style="font-size: 150%;" id="lead-tabContent">
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<div class="tab-pane fade jumbotron p-5"
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id="register-content" role="tabpanel" aria-labelledby="register-tab">
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<%= fa_icon('caret-down', class: 'text-primary mb-4 d-md-none d-block') %>
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<% if !user_signed_in? %>
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In order to contribute to SeqCode Registry,
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<%= link_to('Create a User', new_user_registration_path) %> or
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<%= link_to('Login', new_user_session_path) %>
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<% elsif !current_contributor? %>
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You are currently not registered as a contributor, please
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<%= link_to('Request contributor status',
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contributor_request_path) %>
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<% else %>
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<%= link_to(new_name_url) do %>
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<%= fa_icon('plus-circle', class: 'mr-2') %>
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Register individual new names in our standard mode
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<% end %>
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or <br/>
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<%= link_to(tutorials_url) do %>
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<%= fa_icon('shoe-prints', class: 'mr-2') %>
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Follow a guided registration for multiple novel names
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<% end %>
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<% end %>
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</div>
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<div class="tab-pane fade show active jumbotron p-5"
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id="search-content" role="tabpanel" aria-labelledby="search-tab">
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<%= fa_icon('caret-down', class: 'text-primary mb-4 d-md-none d-block') %>
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<div class='mx-2'>
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<%= render(partial: 'shared/search_bar') %>
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</div>
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<p class="small mt-4">
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We have identified <%=
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link_to(pluralize(@entries[:names].count, 'name'), names_path)
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%>, including <%=
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link_to(
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pluralize(@entries[:validly_published].count, 'name'),
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names_path(status: 'SeqCode')
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)
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%> validly published under the SeqCode in <%=
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link_to(
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pluralize(@entries[:register_lists].count, 'register list'),
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registers_path(status: 'validated')
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)
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%>.
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</p>
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</div>
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<div class="tab-pane fade jumbotron p-5"
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id="read-content" role="tabpanel" aria-labelledby="read-tab">
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<%= fa_icon('caret-down', class: 'text-primary mb-4 d-md-none d-block') %>
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Interested in learning more about the SeqCode?
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<br/>
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<%= link_to(page_about_url) do %>
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<%= fa_icon('question-circle') %>
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Visit the <i>About</i> page of the SeqCode Registry<% end %>,
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<br/>
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<%= link_to(page_seqcode_url) do %>
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<%= fa_icon('book') %>
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Read the current version of the SeqCode<% end %> or
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<br/>
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<%= link_to(page_publications_url) do %>
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<%= fa_icon('newspaper') %>
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Check-out the SeqCode publications<% end %>
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</div>
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</div>
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</div>
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<%= render(partial: 'user_actions') %>
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<%= render(partial: 'news') %>
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<div class="container">
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<div class="row">
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<div class="col-lg-12 text-center mt-5">
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<h2>Recent entries</h1>
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<hr/>
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</div>
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<% @entries.each do |k, v| %>
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<div class="col-lg-4 pb-2">
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<div class="text-center bg-light rounded-lg border p-5 h-100
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recent-entries-list">
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<h3><%= k.to_s.capitalize %></h3>
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<% v.first(5).each do |i| %>
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<%= link_to(i) do %>
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<div><%= i.send(@display[k][0]) %></div>
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<% end %>
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<% end %>
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<%= link_to(@display[k][1], class: 'btn btn-primary mt-2') do %>
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See all
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<% end %>
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</div>
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</div>
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<% end %>
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</div>
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</div>
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<br/>
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<%= render(partial: 'shared/cc') %>

‎config/routes.rb‎

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resources :tags
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# General configuration
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root(to: 'application#main')
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get 'main2' => 'application#main2'
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concern(:autocompletable) do
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get :autocomplete, on: :collection
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end

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