Merge branch 'main' into less-warnings

Author: LucaMarconato

.github/workflows/test.yaml

@@ -19,12 +19,15 @@ jobs:
             fail-fast: false
             matrix:
                 include:
-                    - {os: windows-latest, python: "3.11", dask-version: "2025.12.0", name: "Dask 2025.12.0"}
-                    - {os: windows-latest, python: "3.13", dask-version: "latest", name: "Dask latest"}
-                    - {os: ubuntu-latest, python: "3.11", dask-version: "latest", name: "Dask latest"}
-                    - {os: ubuntu-latest, python: "3.13", dask-version: "latest", name: "Dask latest"}
-                    - {os: macos-latest, python: "3.11", dask-version: "latest", name: "Dask latest"}
-                    - {os: macos-latest, python: "3.13", prerelease: "allow", name: "Python 3.13 (pre-release)"}
+                    - {os: windows-latest, python: "3.11", dask-version: "2025.12.0", name: "min dask"}
+                    - {os: windows-latest, python: "3.13", dask-version: "latest"}
+                    - {os: windows-latest, python: "3.14", dask-version: "latest"}
+                    - {os: ubuntu-latest, python: "3.11", dask-version: "latest"}
+                    - {os: ubuntu-latest, python: "3.13", dask-version: "latest"}
+                    - {os: ubuntu-latest, python: "3.14", dask-version: "latest"}
+                    - {os: macos-latest, python: "3.11", dask-version: "latest"}
+                    - {os: macos-latest, python: "3.13", prerelease: "allow", name: "prerelease"}
+                    - {os: macos-latest, python: "3.14", prerelease: "allow", name: "prerelease"}
         env:
             OS: ${{ matrix.os }}
             PYTHON: ${{ matrix.python }}

src/spatialdata/_io/io_points.py

@@ -24,7 +24,7 @@ def _read_points(
     store: str | Path,
 ) -> DaskDataFrame:
     """Read points from a zarr store."""
-    f = zarr.open(store, mode="r")
+    f = zarr.open(Path(store), mode="r")  # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names
 
     version = _parse_version(f, expect_attrs_key=True)
     assert version is not None

src/spatialdata/_io/io_shapes.py

@@ -34,7 +34,7 @@ def _read_shapes(
     store: str | Path,
 ) -> GeoDataFrame:
     """Read shapes from a zarr store."""
-    f = zarr.open(store, mode="r")
+    f = zarr.open(Path(store), mode="r")  # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names
     version = _parse_version(f, expect_attrs_key=True)
     assert version is not None
     shape_format = ShapesFormats[version]

src/spatialdata/_io/io_table.py

@@ -22,7 +22,7 @@
 def _read_table(store: str | Path) -> AnnData:
     table = read_anndata_zarr(str(store))
 
-    f = zarr.open(store, mode="r")
+    f = zarr.open(Path(store), mode="r")  # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names
     version = _parse_version(f, expect_attrs_key=False)
     assert version is not None
     table_format = TablesFormats[version]