A list scientific software (and corresponding publication) developed by personnel in the Scientific Computing Department.
- ADIOS4DOLFINx: A framework for checkpointing in FEniCS ADIOS4DOLFINx {cite}
dokken2024adios - Multi-point constraints with DOLFINx: DOLFINx_MPC
- SMART: Spatial Modeling Algorithms for Reactions and Transport smart {cite}
laughlin2023smart - Network models for FEniCS: Graphnics
- Software Components for Multiphysics Problems: HAZniCS {cite}
budisa2022
- Surface Volume Meshing ToolKit: SVMTK {cite}
valnes2022 - Tool for creating idealised cardiac geometries and microstructure in FEniCS: cardiac-geometries
- Tool for creating idealised cardiac geometries and microstructure in FEniCSx: cardiac-geometriesx
- Next generation Open Source Navier Stokes solver using FEniCSx oasisx
- Intracranial Pulsation: brainpulse {cite}
causemann2022
- Simula Cardiac ElectroMechanics Solver simcardems {cite}
finsberg2023 - Tools for working with microphysiological data mps
- Library for tracking motion in cardiac mps data mps-motion
- Library for extracting action potential features ap-features
- Cardiac Circulation Models: circulation
pulse- Cardiac mechanics solver in FEniCSx and FEnICSbeat- Cardiac electrophysiology solver in FEniCSx and FEnICSldrb- Library for creating rule-based fiber orientations in FEniCSx and FEniCS
- General ODE translator gotranx {cite}`
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