research.Rmd

---
title: "Some glimpses of my research profile..."
---

<br>

```{r out.width = "50%", fig.align = "center", echo = FALSE}
knitr::include_graphics("Pictures/3.jpg")
```

<br>

Below is a list of my published projects (in descending order of publication year) and upcoming conference presentations. Please refer to my [CV](https://bit.ly/rbCV), [ResearchGate profile](https://www.researchgate.net/profile/Rupam-Bhattacharyya), or [Google Scholar page](https://scholar.google.com/citations?user=D5F2V4YAAAAJ&hl=en) to get a complete list of my preprints, ongoing projects, past presentations, and accolades. My [CV](https://bit.ly/rbCV) also contains the most updated list of my administrative and peer review activities.

## Published Works

1. Luo, J., Chen, Z., Qiao, Y., Tien, J., Young, E., Mannan, R., Mahapatra, S., **Bhattacharyya, R.**, ... & Chinnaiyan, A. (2025). Targeting histone H2B acetylated enhanceosomes via p300/CBP degradation in prostate cancer. *Nature Genetics*, 1-14.

2. Cheng, C., Hu, J., Mannan, R., He, T., **Bhattacharyya, R.**, Magnuson, B., ... & Chinnaiyan, A. (2025). Targeting PIKfyve-driven lipid homeostasis as a metabolic vulnerability in pancreatic cancer. *Nature*, 642(8068), 776–784.

3. **Bhattacharyya, R.**, Henderson, N., & Baladandayuthapani, V. (2024). Functional integrative Bayesian analysis of high-dimensional multiplatform genomic data. *JASA Applications and Case Studies*, 119(548), 2533–2547.

4. Kundu, R., Datta, J., Ray, D., Mishra, S., **Bhattacharyya, R.**, Zimmermann, L., & Mukherjee, B. (2023). Comparative impact assessment of COVID-19 policy interventions in five South Asian countries using reported and estimated unreported death counts during 2020–2021. *PLOS Global Public Health*, 3(12), e0002063.

5. **Bhattacharyya, R.**, Henderson, N., & Baladandayuthapani, V. (2023, January). BaySyn: Bayesian evidence synthesis for multi-system multiomic integration. In *Pacific Symposium on Biocomputing* (Vol. 28, No. 2023, pp. 275–286).

6. **Bhattacharyya, R.**, Burman, A., Singh, K., Banerjee, S., Maity, S., Auddy, A., ... & Baladandayuthapani, V. (2022). Role of multi-resolution vulnerability indices in COVID-19 spread in India: A Bayesian model-based analysis. *BMJ Open*, 12(11), e056292.

7. Salvatore, M., Purkayastha, S., Ganapathi, L., **Bhattacharyya, R.**, Kundu, R., Zimmermann, L., ... & Mukherjee, B. (2022). Lessons from SARS-CoV-2 in India: A data-driven framework for pandemic resilience. *Science Advances*, 8(24), eabp8621.

8. **Bhattacharyya, R.**, Banerjee, S., Mohammed, S., & Baladandayuthapani, V. (2021). Network-based modeling of COVID-19 dynamics: Early pandemic spread in India. *Journal of the Indian Statistical Association*, 59(2), 1–43.

9. Purkayastha, S., **Bhattacharyya, R.**, Bhaduri, R., Kundu, R., Gu, X., Salvatore, M., ... & Mukherjee, B. (2021). A comparison of five epidemiological models for transmission of SARS-CoV-2 in India. *BMC Infectious Diseases*, 21(1), 1–23.

10. **Bhattacharyya, R.**, Kundu, R., Bhaduri, R., Ray, D., Beesley, L. J., Salvatore, M., & Mukherjee, B. (2021). Incorporating false negative tests in epidemiological models for SARS-CoV-2 transmission and reconciling with seroprevalence estimates. *Scientific Reports*, 11(1), 1–14.

11. Ray, D., **Bhattacharyya, R.**, & Mukherjee, B. (2021). Discussion on “The timing and effectiveness of implementing mild interventions of COVID-19 in large industrial regions via a synthetic control method” by Tian et al. *Statistics and Its Interface*, 14(1), 25–28.

12. Salvatore, M., Basu, D., Ray, D., Kleinsasser, M., Purkayastha, S., **Bhattacharyya, R.**, & Mukherjee, B. (2020). Comprehensive public health evaluation of lockdown as a non-pharmaceutical intervention on COVID-19 spread in India: National trends masking state-level variations. *BMJ Open*, 10(12), e041778.

13. Ray, D., Salvatore, M., **Bhattacharyya, R.**, Wang, L., Du, J., Mohammed, S., ... & Mukherjee, B. (2020). Predictions, role of interventions and effects of a historic national lockdown in India’s response to the COVID-19 pandemic: Data science call to arms. *Harvard Data Science Review*, 2020(Suppl 1).

14. **Bhattacharyya, R.**, Ha, M. J., Liu, Q., Akbani, R., Liang, H., & Baladandayuthapani, V. (2020). Personalized network modeling of the pan-cancer patient and cell line interactome. *JCO Clinical Cancer Informatics*, 4, 399–411.

15. Liu, Q., Ha, M. J., **Bhattacharyya, R.**, Garmire, L., & Baladandayuthapani, V. (2020, January). Network-based matching of patients and targeted therapies for precision oncology. In *Pacific Symposium on Biocomputing* (Vol. 25, No. 2020, pp. 623–634).

## Upcoming Presentations

- Watch this space for my 2025 presentations!