diff --git a/docs/deep/instanseg.md b/docs/deep/instanseg.md index ed797a1..a106ac7 100644 --- a/docs/deep/instanseg.md +++ b/docs/deep/instanseg.md @@ -24,7 +24,7 @@ Goldsborough, Thibaut, et al. A novel channel invariant architecture for the seg ## Requirements -- QuPath [version 0.6](https://qupath.github.io/) (installation instructions [here](https://qupath.readthedocs.io/en/0.4/docs/intro/installation.html)) +- QuPath version 0.6 or later ([installation instructions](/docs/intro/installation.html)) - At least one whole slide image - [Deep Java Library QuPath Extension](https://github.com/qupath/qupath-extension-djl) - [InstanSeg QuPath Extension](https://github.com/qupath/qupath-extension-instanseg) diff --git a/docs/deep/wsinfer.md b/docs/deep/wsinfer.md index be14b9b..cbfb2a7 100644 --- a/docs/deep/wsinfer.md +++ b/docs/deep/wsinfer.md @@ -17,7 +17,7 @@ Kaczmarzyk, J.R., O’Callaghan, A., Inglis, F. et al. Open and reusable deep le ## Requirements -- QuPath [version 0.4](https://qupath.github.io/) (installation instructions [here](https://qupath.readthedocs.io/en/0.4/docs/intro/installation.html)). +- QuPath v0.6 or later ([installation instructions](https://qupath.readthedocs.io/en/stable/docs/intro/installation.html)). - At least one whole slide image - [WSInfer QuPath Extension](https://github.com/qupath/qupath-extension-wsinfer/releases) - PyTorch (this can be downloaded while using the extension) @@ -29,7 +29,7 @@ If you have an NVIDIA GPU and want to use it with WSInfer, you will need to inst ## Set-up -With QuPath installed and running, drag and drop the WSInfer extension into the application and restart QuPath. +With QuPath installed and running, use the [extension manager](/docs/intro/extensions) to install the WSInfer extension from the QuPath catalog. Once installed, open up an image and run the extension via {menuselection}`Extensions --> WSInfer`. You should see the window below: diff --git a/docs/intro/installation.md b/docs/intro/installation.md index 8b03e35..5b3390e 100644 --- a/docs/intro/installation.md +++ b/docs/intro/installation.md @@ -1,5 +1,7 @@ # Installation +To install QuPath, you should first download the appropriate version for your operating system (more on that below) from the [QuPath website](https://qupath.github.io/). + QuPath isn't currently a signed application. Over the past few years, security changes on Windows & Mac make installing any unsigned application a bit more difficult. This page can help you navigate the challenges. @@ -170,4 +172,4 @@ QuPath for Linux was compiled on Ubuntu - with best efforts made to include all ## Running from source -If all else fails, you can try [](building) - which should work on Windows, macOS and Linux. \ No newline at end of file +If all else fails, you can try [](building) - which should work on Windows, macOS and Linux.