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TrackMateR

TrackMateR 0.4.0

  • Testing framework added. Bumping to 0.4.0 to reflect this major change.

TrackMateR 0.3.15

  • Added convertTrackMateXML2CSV() to convert TrackMate XML fles to csv.

TrackMateR 0.3.14

  • Improved speed in readTrackMateXML().
  • Now calculateMSD() returns a data frame with MSD for each trace.

TrackMateR 0.3.13

  • Added compareDatasetValues() to simply extract data from multiple datasets.

TrackMateR 0.3.12

  • Moved from {XML} to {xml2} for reading TrackMate XML files. Future-proof but currently slower.
  • Large speed improvement when analysing multiple datasets.
  • Better memory management when analysing large datasets.

TrackMateR 0.3.11

  • Better handling of more than one channel in TrackMate XML files

TrackMateR 0.3.10

  • Fixed an issue where sparse TrackMate XML files caused compareDatasets() to fail
  • These files are skipped and a warning is issued. They can be loaded and analyzed manually if desired (limit is more than 3 tracks with at least one with 10 frames)

TrackMateR 0.3.9

  • Warning for TrackMate XML files that contain tracks with more than one point per frame
  • Added xy scaling for shape descriptors

TrackMateR 0.3.8

  • Added report of intensity and duration to workflow

TrackMateR 0.3.7

  • Added estimator of diffusion co-efficient and histogram of D (per track)

TrackMateR 0.3.6

  • Ability to load a ground truth csv dataset
  • Compare multiple ground truth datasets

TrackMateR 0.3.5

  • More flexibility to automated workflows (axes on MSD plots can be configured)
  • Minor fixes to plots in compareDatasets()
  • Better handling in jump distance calculation
  • Test datasets available for multiple comparisons
  • Improved documentation

TrackMateR 0.3.4

  • Fixes for parallelisation. Windows users still do not benefit from parallel processing that Mac/Linux users enjoy.

TrackMateR 0.3.3

  • More flexibility to automated workflows by allowing parameters to be passed via ellipsis to reportDataset() and compareDatasets()
  • Better resilience to failures in jump distance fitting, and reading XML

TrackMateR 0.3.2

  • Fixes for edge cases and issues

TrackMateR 0.3.1

  • Fixes for parallelisation issue and better handling of fitting errors

TrackMateR 0.3.0

  • First release on GitHub