From e717335034f4a1797af9977e79e29a3316025e8f Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 19 Jan 2026 19:49:30 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.6.0...v6.0.0)
- https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror
- [github.com/psf/black-pre-commit-mirror: 24.8.0 → 26.1.0](https://github.com/psf/black-pre-commit-mirror/compare/24.8.0...26.1.0)
- [github.com/pycqa/isort: 5.13.2 → 7.0.0](https://github.com/pycqa/isort/compare/5.13.2...7.0.0)
- [github.com/pycqa/flake8: 7.1.1 → 7.3.0](https://github.com/pycqa/flake8/compare/7.1.1...7.3.0)
---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e1cdcb1..7905b60 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
@@ -10,16 +10,16 @@ repos:
     -   id: check-added-large-files
     -   id: check-case-conflict
     -   id: check-merge-conflict
--   repo: https://github.com/psf/black
-    rev: 24.8.0
+-   repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 26.1.0
     hooks:
     -   id: black
 -   repo: https://github.com/pycqa/isort
-    rev: 5.13.2
+    rev: 7.0.0
     hooks:
     -   id: isort
 -   repo: https://github.com/pycqa/flake8
-    rev: 7.1.1
+    rev: 7.3.0
     hooks:
     -   id: flake8
 -   repo: https://github.com/pycqa/pydocstyle

From d6e980368e05c3e81d85556bdf7ffa897ef41d06 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 19 Jan 2026 19:49:41 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 phys2denoise/cli/run.py            |  1 -
 phys2denoise/metrics/cardiac.py    | 24 ++++++++----------------
 phys2denoise/metrics/chest_belt.py | 30 ++++++++++--------------------
 phys2denoise/metrics/multimodal.py | 18 ++++++------------
 versioneer.py                      |  4 +---
 5 files changed, 25 insertions(+), 52 deletions(-)

diff --git a/phys2denoise/cli/run.py b/phys2denoise/cli/run.py
index 62c78f4..dc48dcd 100644
--- a/phys2denoise/cli/run.py
+++ b/phys2denoise/cli/run.py
@@ -1,7 +1,6 @@
 # -*- coding: utf-8 -*-
 """Parser for phys2denoise."""
 
-
 import argparse
 
 from phys2denoise import __version__
diff --git a/phys2denoise/metrics/cardiac.py b/phys2denoise/metrics/cardiac.py
index 7c87dc1..b03444e 100644
--- a/phys2denoise/metrics/cardiac.py
+++ b/phys2denoise/metrics/cardiac.py
@@ -89,22 +89,18 @@ def _cardiac_metrics(
         data = io.load_physio(data, fs=fs)
         data._metadata["peaks"] = peaks
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with existing peaks metadata (e.g. using the peakdet module), or
             by providing the physiological data timeseries, the sampling frequency,
             and the peak indices separately.
-            """
-        )
+            """)
     if data.peaks.size == 0:
-        raise ValueError(
-            """
+        raise ValueError("""
             Peaks must be a non-empty list.
             Make sure to run peak detection on your physiological data first,
             using the peakdet module, or other software of your choice.
-            """
-        )
+            """)
 
     # Convert window to samples, but halves it.
     halfwindow_samples = int(round(window * data.fs / 2))
@@ -384,22 +380,18 @@ def cardiac_phase(data, slice_timings, n_scans, t_r, peaks=None, fs=None, **kwar
         data = io.load_physio(data, fs=fs)
         data._metadata["peaks"] = peaks
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with existing peaks metadata (e.g. using the peakdet module), or
             by providing the physiological data timeseries, the sampling frequency,
             and the peak indices separately.
-            """
-        )
+            """)
     if data.peaks.size == 0:
-        raise ValueError(
-            """
+        raise ValueError("""
             Peaks must be a non-empty list.
             Make sure to run peak detection on your physiological data first,
             using the peakdet module, or other software of your choice.
-            """
-        )
+            """)
 
     assert slice_timings.ndim == 1, "Slice times must be a 1D array"
     n_slices = np.size(slice_timings)
diff --git a/phys2denoise/metrics/chest_belt.py b/phys2denoise/metrics/chest_belt.py
index 6551c57..51f2927 100644
--- a/phys2denoise/metrics/chest_belt.py
+++ b/phys2denoise/metrics/chest_belt.py
@@ -56,22 +56,18 @@ def respiratory_variance_time(
         data._metadata["peaks"] = peaks
         data._metadata["troughs"] = troughs
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with existing peaks and troughs metadata (e.g. using the peakdet module), or
             by providing the physiological data timeseries, the sampling frequency,
             and the peak and trough indices separately.
-            """
-        )
+            """)
     if data.peaks.size == 0 or data.troughs.size == 0:
-        raise ValueError(
-            """
+        raise ValueError("""
             Peaks and troughs must be non-empty lists.
             Make sure to run peak/trough detection on your physiological data first,
             using the peakdet module, or other software of your choice.
-            """
-        )
+            """)
 
     timestep = 1 / data.fs
     # respiration belt timing
@@ -219,14 +215,12 @@ def _respiratory_pattern_variability(data, window):
     elif fs is not None:
         data = io.load_physio(data, fs=fs)
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with the sampling frequency encapsulated, or
             by providing the physiological data timeseries and the sampling
             frequency separately.
-            """
-        )
+            """)
 
     # Convert window to Hertz
     window = int(window * data.fs)
@@ -288,14 +282,12 @@ def respiratory_variance(data, fs=None, window=6, **kwargs):
     elif fs is not None:
         data = io.load_physio(data, fs=fs)
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with the sampling frequency encapsulated, or
             by providing the physiological data timeseries and the sampling
             frequency separately.
-            """
-        )
+            """)
 
     # Convert window to Hertz
     halfwindow_samples = int(round(window * data.fs / 2))
@@ -338,14 +330,12 @@ def respiratory_phase(data, n_scans, slice_timings, t_r, fs=None, **kwargs):
     elif fs is not None:
         data = io.load_physio(data, fs=fs)
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with the sampling frequency encapsulated, or
             by providing the physiological data timeseries and the sampling
             frequency separately.
-            """
-        )
+            """)
 
     assert slice_timings.ndim == 1, "Slice times must be a 1D array"
     n_slices = np.size(slice_timings)
diff --git a/phys2denoise/metrics/multimodal.py b/phys2denoise/metrics/multimodal.py
index fa28bae..8889a66 100644
--- a/phys2denoise/metrics/multimodal.py
+++ b/phys2denoise/metrics/multimodal.py
@@ -66,13 +66,11 @@ def retroicor(
         if data.physio_type is None and physio_type is not None:
             data._physio_type = physio_type
         elif data.physio_type is None and physio_type is None:
-            raise ValueError(
-                """
+            raise ValueError("""
                 Since the provided Physio object does not specify a `physio_type`,
                 this function's `physio_type` parameter must be specified as a
                 value from {'cardiac', 'respiratory'}
-                """
-            )
+                """)
 
     elif fs is not None and physio_type is not None:
         data = io.load_physio(data, fs=fs)
@@ -80,23 +78,19 @@ def retroicor(
         if data.physio_type == "cardiac":
             data._metadata["peaks"] = cardiac_peaks
     else:
-        raise ValueError(
-            """
+        raise ValueError("""
             To use this function you should either provide a Physio object
             with existing peaks metadata if it describes a cardiac signal
             (e.g. using the peakdet module), or
             by providing the physiological data timeseries, the sampling frequency,
             the physio_type and the peak indices separately.
-            """
-        )
+            """)
     if not data.peaks and data.physio_type == "cardiac":
-        raise ValueError(
-            """
+        raise ValueError("""
             Peaks must be a non-empty list for cardiac data.
             Make sure to run peak detection on your cardiac data first,
             using the peakdet module, or other software of your choice.
-            """
-        )
+            """)
 
     n_slices = np.shape(slice_timings)  # number of slices
 
diff --git a/versioneer.py b/versioneer.py
index 2b54540..1cd4726 100644
--- a/versioneer.py
+++ b/versioneer.py
@@ -427,9 +427,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=
     return stdout, p.returncode
 
 
-LONG_VERSION_PY[
-    "git"
-] = '''
+LONG_VERSION_PY["git"] = '''
 # This file helps to compute a version number in source trees obtained from
 # git-archive tarball (such as those provided by githubs download-from-tag
 # feature). Distribution tarballs (built by setup.py sdist) and build