Using code as
set.seed(11)
mat <- matrix(sample(c(0, 1), 5000 * 500, replace = TRUE), nrow = 5000)
mat <- bigmemory::as.big.matrix(mat, type = "double", shared = TRUE)
res <- biglasso::cv.biglasso(
mat, sample(c(TRUE, FALSE), 5000, replace = TRUE), family = "binomial",
ncores = 4, nlambda = 50, verbose = TRUE
)
I get
Preprocessing start: 2021-09-20 21:29:25.000
Preprocessing end: 2021-09-20 21:29:25.000
-----------------------------------------------
Lambda 1. Now time: 2021-09-20 21:29:25.000
...
Lambda 49. Now time: 2021-09-20 21:29:27.000
Warning: stack imbalance in '<-', 2 then 21
Any my sessionInfo() is
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /cluster/spack/apps/linux-centos7-x86_64/gcc-8.2.0/openblas-0.3.7-aapr6wps44sbmhbedmmigxjk5bhfy5p3/lib/libopenblas_haswell-r0.3.7.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] bigmemory.sri_0.1.3 bigmemory_4.5.36 compiler_4.0.2
[4] Matrix_1.2-18 biglasso_1.4.1 parallel_4.0.2
[7] Rcpp_1.0.7 grid_4.0.2 ncvreg_3.13.0
[10] lattice_0.20-41
Happy to share further info if requested!
Using code as
I get
Any my
sessionInfo()isHappy to share further info if requested!