AutoMorph/run.sh at main · ot710/AutoMorph · GitHub

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#!/bin/bash
# RUN FILE FOR AUTOMORPH
# YUKUN ZHOU 2023-08-24

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rm -rf ./Results/*
# STEP 1 IMAGE PREPROCESSING (EXTRA BACKGROUND REMOVE, SQUARE)

echo "### Preprocess Start ###"
cd M0_Preprocess
python EyeQ_process_main.py

# # STEP 2 IMAGE QUALITY ASSESSMENT

# echo "### Image Quality Assessment ###"

# cd ../M1_Retinal_Image_quality_EyePACS
# sh test_outside.sh

# python merge_quality_assessment.py

# # STEP 3 OPTIC DISC & VESSEL & ARTERY/VEIN SEG
# echo "### Segmentation Modules ###"

# cd ../M2_Vessel_seg
# sh test_outside.sh

# cd ../M2_Artery_vein
# sh test_outside.sh

# cd ../M2_lwnet_disc_cup
# sh test_outside.sh

# # STEP 4 METRIC MEASUREMENT
# echo "### Feature measuring ###"

# cd ../M3_feature_zone/retipy/
# python create_datasets_disc_centred_B.py
# python create_datasets_disc_centred_C.py
# python create_datasets_macular_centred_B.py
# python create_datasets_macular_centred_C.py

# cd ../../M3_feature_whole_pic/retipy/
# python create_datasets_macular_centred.py
# python create_datasets_disc_centred.py

# cd ../../
# python csv_merge.py

echo "### Done ###"


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