Open Problems in Single-Cell Analysis

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30 packages

metrics/similarity
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/similarity

1.75k
methods_cell_type_annotation/ssam
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/ssam

1.12k
methods_count_aggregation/basic_count_aggregation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_count_aggregation/basic_count_aggregation

936
methods_qc_filter/basic_qc_filter
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_qc_filter/basic_qc_filter

879
methods_calculate_cell_volume/alpha_shapes
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_calculate_cell_volume/alpha_shapes

835
methods_transcript_assignment/basic_transcript_assignment
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/basic_transcript_assignment

790
methods_normalization/normalize_by_volume
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/normalize_by_volume

768
methods_expression_correction/no_correction
Published Sep 21, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/no_correction

763
methods_data_aggregation/aggregate_spatial_data
Published Oct 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_data_aggregation/aggregate_spatial_data

744
metrics/quality
Published Oct 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/quality

723
methods_transcript_assignment/pciseq
Published Sep 14, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/pciseq

667
methods_transcript_assignment/baysor
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/baysor

650
methods_cell_type_annotation/tacco
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/tacco

607
data_processors/process_dataset
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/data_processors/process_dataset

526
methods_transcript_assignment/clustermap
Published Sep 14, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/clustermap

483
methods_expression_correction/resolvi_correction
Published Mar 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/resolvi_correction

483
methods_normalization/spanorm
Published Jul 9, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/spanorm

426
methods_expression_correction/gene_efficiency_correction
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/gene_efficiency_correction

413
methods_cell_type_annotation/moscot
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/moscot

403
methods_segmentation/watershed
Published Mar 10, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/watershed

399
control_methods/identity
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/control_methods/identity

368
control_methods/permute_celltype_annotations
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/control_methods/permute_celltype_annotations

351
methods_transcript_assignment/comseg
Published Sep 19, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/comseg

346
methods_transcript_assignment/proseg
Published Sep 22, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/proseg

337
methods_segmentation/binning
Published Dec 3, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/binning

301
methods_segmentation/cellpose
Published Nov 22, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/cellpose

297
methods_segmentation/custom_segmentation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/custom_segmentation

287
methods_segmentation/stardist
Published Jul 29, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/stardist

287
datasets/loaders/vizgen_merscope
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/datasets/loaders/vizgen_merscope

195
methods_normalization/normalize_by_counts
Published Sep 20, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/normalize_by_counts

188