Open Problems in Single-Cell Analysis

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30 packages

metrics/average_batch_r2
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/average_batch_r2

1.22k
metrics/emd
Published Feb 13, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/emd

1.15k
metrics/flowsom_mapping_similarity
Published May 22, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/flowsom_mapping_similarity

1.06k
metrics/n_inconsistent_peaks
Published Mar 6, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/n_inconsistent_peaks

917
metrics/bras
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/bras

624
metrics/lisi
Published Sep 24, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/lisi

500
metrics/ratio_inconsistent_peaks
Published Oct 12, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/metrics/ratio_inconsistent_peaks

416
methods/harmonypy
Published Dec 4, 2024 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/harmonypy

371
methods/cytonorm_all_controls_to_mid
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytonorm_all_controls_to_mid

318
methods/cycombine_all_controls_to_goal
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_all_controls_to_goal

284
methods/combat
Published Feb 24, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/combat

283
methods/limma_remove_batch_effect
Published Dec 4, 2024 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/limma_remove_batch_effect

275
methods/cytovi
Published Sep 23, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytovi

260
methods/cycombine_no_controls_to_mid
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_no_controls_to_mid

258
methods/rpca_to_goal
Published Aug 7, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/rpca_to_goal

256
methods/cycombine_one_control_to_goal
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_one_control_to_goal

256
methods/cycombine_one_control_to_mid
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_one_control_to_mid

253
methods/cytonorm_all_controls_to_goal
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytonorm_all_controls_to_goal

240
methods/cycombine_no_controls_to_goal
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_no_controls_to_goal

235
methods/batchadjust_one_control
Published Jul 10, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/batchadjust_one_control

227
methods/gaussnorm
Published Apr 16, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/gaussnorm

226
methods/cytonorm_no_controls_to_mid
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytonorm_no_controls_to_mid

221
control_methods/shuffle_integration_by_batch
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/control_methods/shuffle_integration_by_batch

219
methods/batchadjust_all_controls
Published Jul 10, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/batchadjust_all_controls

208
methods/cytonorm_one_control_to_mid
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytonorm_one_control_to_mid

206
methods/cytonorm_no_controls_to_goal
Published Jul 31, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cytonorm_no_controls_to_goal

199
control_methods/shuffle_integration_by_cell_type
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/control_methods/shuffle_integration_by_cell_type

197
control_methods/shuffle_integration
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/control_methods/shuffle_integration

193
control_methods/no_integration
Published Feb 24, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/control_methods/no_integration

179
methods/cycombine_all_controls_to_mid
Published Jul 30, 2025 by Open Problems in Single-Cell Analysis in task_cyto_batch_integration/methods/cycombine_all_controls_to_mid

179