Open Problems in Single-Cell Analysis

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30 packages

data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_run

5.42k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/clustering_overlap

3.42k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_f1

3.42k
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/transform

3.37k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/graph_connectivity

3.16k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_asw

3.14k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/lisi

3.12k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_label

3.08k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_batch

3.05k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet

3.04k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/pcr

3.04k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/cell_cycle_conservation

3.02k
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/precompute_clustering_merge

1.66k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/hvg_overlap

1.37k
metrics/kbet_pg
Published Feb 28, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet_pg

657
metrics/kbet_pg_label
Published Feb 28, 2025 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet_pg_label

637
methods/mnnpy
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/mnnpy

529
methods/batchelor_mnn_correct
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_mnn_correct

502
methods/scanorama
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanorama

494
methods/pyliger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/pyliger

468
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration

457
methods/harmonypy
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/harmonypy

444
control_methods/shuffle_integration_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_cell_type

427
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration

426
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/combat

421
control_methods/embed_cell_types
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/embed_cell_types

418
methods/harmony
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/harmony

417
methods/bbknn
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/bbknn

413
methods/uce
Published Nov 8, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/uce

409
methods/scvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scvi

408