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    118 repositories

    • simexp.github.io

      Public
      website of the SIMEXP lab
      Python
      •
      Creative Commons Attribution 4.0 International
      •1•0•13•2•Updated Apr 7, 2026Apr 7, 2026

    • Repo2Data

      Public
      Automatic data fetcher from the web
      Python
      •
      MIT License
      •7•9•10•1•Updated Mar 1, 2026Mar 1, 2026

    • prevent-ad-benchmark

      Public
      Benchmarking neuroimaging foundation models (BrainLM, BrainHarmonix) on the PREVENT-AD dataset for downstream prediction of clinical and biological targets.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • prevent-ad_dr8.1internal

      Public
      All fMRI data procressing used for Prevent-AD internal data release 8.0.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • fmriprep-denoise-benchmark

      Public
      Benchmark denoising strategies available from fmriprep.
      Python
      •
      MIT License
      •9•16•0•0•Updated Dec 18, 2025Dec 18, 2025

    • giga_preprocess2

      Public
      Preprocess datasets using fMRIPrep
      Shell
      •
      MIT License
      •1•0•0•3•Updated Nov 7, 2025Nov 7, 2025

    • giga_auto_qc

      Public
      Automatic quality control for fMRIPrep outputs aimed for large dataset
      Python
      •
      MIT License
      •2•2•8•1•Updated Aug 14, 2025Aug 14, 2025

    • fmriprep-slurm

      Public
      Generate and run SLURM jobs on HPCs
      Python
      •
      MIT License
      •3•12•2•0•Updated Aug 13, 2025Aug 13, 2025

    • bids_conversion

      Public
      Scripts to convert data from CCNA and CIMAQ
      Python
      •2•1•0•6•Updated Jul 31, 2025Jul 31, 2025

    • wrangling-phenotype

      Public
      get ukbb data in shape for other projects
      Python
      •
      MIT License
      •0•0•3•2•Updated Jul 22, 2025Jul 22, 2025

    • autism-signature

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jun 20, 2025Jun 20, 2025

    • rs-autoregression-prediction

      Public
      Autoregressive model on resting state time series benchmark
      Python
      •
      MIT License
      •1•2•1•0•Updated Jun 4, 2025Jun 4, 2025

    • fmriprep-denoise-benchmark-reproducible

      Public
      Create the atlases for the benchmark - parcels has to be individual, none connected blobs
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • lab-website

      Public
      a website for the simexp lab
      SCSS
      •
      MIT License
      •2•3•0•0•Updated May 12, 2025May 12, 2025

    • ukbb_scaling_reports

      Public
      Making a new repo for generating reports
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • ukbb-preprocess-template-2025

      Public
      HTML
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • general_class_balancer

      Public
      Data matching algorithm for categorical and continuous variables
      Python
      •
      MIT License
      •2•0•0•1•Updated Oct 14, 2024Oct 14, 2024

    • cwas_simulation

      Public
      Simulate a connectome wide association study with real data
      Python
      •
      MIT License
      •0•0•0•2•Updated Aug 15, 2024Aug 15, 2024

    • difumo_segmentation

      Public
      This utility download and segment DiFuMo atlas, so each component is exactly one independent region.
      Python
      •0•0•2•0•Updated May 16, 2024May 16, 2024

    • ad_sz

      Public
      Connectome-wide association of resting-state functional connectivity and clinical diagnoses in heterogeneous neuropsychiatric and neurodegenerative conditions
      Jupyter Notebook
      •
      MIT License
      •1•0•2•1•Updated May 7, 2024May 7, 2024

    • qc_output

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • mist2templateflow

      Public
      Convert the MIST atlas to fit templateflow naming convention
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Apr 2, 2024Apr 2, 2024

    • lab-documentation

      Public
      SIMEXP-Documentation
      Python
      •
      MIT License
      •7•1•4•0•Updated Oct 25, 2023Oct 25, 2023

    • rs_signal_extract

      Public
      BIDS App for resting state signal extraction using nilearn.
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Sep 5, 2023Sep 5, 2023

    • dynamic-states-parcellations

      Public
      This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.
      Jupyter Notebook
      •2•4•4•17•Updated Dec 8, 2022Dec 8, 2022

    • giga_preprocess_scripts

      Public
      MATLAB
      •2•1•0•0•Updated Dec 7, 2022Dec 7, 2022

    • niak

      Public
      GNU Octave library for connectivity analysis in large fMRI datasets
      data-miningpipelinesoctave
      data-miningpipelinesoctaveneuroimagingfmribrain-connectivity
      MATLAB
      •
      Other
      •22•30•16•3•Updated Oct 11, 2022Oct 11, 2022

    • fmriprep-reproducibility

      Public
      A datalad repository that contains all materials to check for the stability of the fmriprep LTS version
      Jupyter Notebook
      •
      Apache License 2.0
      •3•4•1•0•Updated May 3, 2022May 3, 2022

    • fmriprep-reproducibility-reference

      Public
      0•1•0•0•Updated Mar 23, 2022Mar 23, 2022

    • gcn_package

      Public
      The lab repository for GCN
      Jupyter Notebook
      •
      MIT License
      •2•0•4•0•Updated Mar 10, 2022Mar 10, 2022
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