Repositories list

• JuliaHealthAudit

  Public

  JuliaHealth/JuliaHealthAudit’s past year of commit activity
  MIT License

  •0•0•0•0•Updated Jan 10, 2026Jan 10, 2026

• MedImages.jl

  Public

  JuliaHealth/MedImages.jl’s past year of commit activity
  Upstream package that provides an interface to the ITK I/O functions in Julia and a bunch of medical imaging analysis workflows

  Julia

  •

  Apache License 2.0

  •5•9•4•1•Updated Jan 9, 2026Jan 9, 2026

• Thunderbolt.jl

  Public

  JuliaHealth/Thunderbolt.jl’s past year of commit activity
  A modular shared-memory high-performance framework for multiscale cardiac multiphysics simulations.

  hpcelectrophysiologycardiac-dynamics+ 5fsiscientific-softwaremultiphysics-simulationelectromechanicscomputational-cardiology

  Julia

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  MIT License

  •5•21•64•3•Updated Jan 7, 2026Jan 7, 2026

• NeuroAnalyzer.jl

  Public

  JuliaHealth/NeuroAnalyzer.jl’s past year of commit activity
  Julia toolbox for analyzing neurophysiological data

  julianeurosciencemeg+ 11eegpsychologytmsbrainnirsecogtacs+ 4

  Julia

  •

  BSD 2-Clause "Simplified" License

  •4•18•0•0•Updated Jan 6, 2026Jan 6, 2026

• KomaMRI.jl

  Public

  JuliaHealth/KomaMRI.jl’s past year of commit activity
  Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.

  simulationmrigpu-acceleration+ 3diffusiondiffusion-mricardiac

  Julia

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  MIT License

  •31•176•93•10•Updated Jan 6, 2026Jan 6, 2026

• HealthDash.jl

  Public
  Julia

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  MIT License

  •0•2•1•0•Updated Dec 24, 2025Dec 24, 2025

• JuliaHealthLLM

  Public

  JuliaHealth/JuliaHealthLLM’s past year of commit activity
  Prototype JuliaHealth LLM project

  HTML

  •

  MIT License

  •0•4•3•32•Updated Dec 19, 2025Dec 19, 2025

• HealthLLM.jl

  Public

  JuliaHealth/HealthLLM.jl’s past year of commit activity
  Julia

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  MIT License

  •0•2•2•13•Updated Dec 19, 2025Dec 19, 2025

• juliahealth.github.io

  Public

  JuliaHealth/juliahealth.github.io’s past year of commit activity
  The official JuliaHealth website -- powered by Quarto, made with love.

  blogmachine-learningresearch+ 6juliahealthmedical-imagingcensusquartoobservational-health

  JavaScript

  •9•6•19•3•Updated Dec 18, 2025Dec 18, 2025

• CloToP.jl

  Public
  Clozapine Toxicity Predictor

  HTML

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•0•Updated Dec 11, 2025Dec 11, 2025

• SMARTBackendServices.jl

  Public
  Server-to-server FHIR connections

  Julia

  •

  MIT License

  •1•0•0•1•Updated Dec 1, 2025Dec 1, 2025

• JuliaHealthEcosystemPaper

  Public
  JuliaCon Proceedings Paper about the JuliaHealth Ecosystem

  TeX

  •

  MIT License

  •0•1•0•0•Updated Nov 27, 2025Nov 27, 2025

• HealthSampleData.jl

  Public
  Sample health data for a variety of health formats and use cases

  Julia

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  MIT License

  •2•2•7•3•Updated Nov 24, 2025Nov 24, 2025

• BlindingIndex.jl

  Public

  JuliaHealth/BlindingIndex.jl’s past year of commit activity
  Compute James (1996) and Bang (2004) Blinding Indices

  Julia

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

• BloodFlowTrixi.jl

  Public
  This package implements 1D and 2D blood flow models for arterial circulation using Trixi.jl, enabling efficient numerical simulation and analysis.

  Julia

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  MIT License

  •0•42•2•1•Updated Nov 24, 2025Nov 24, 2025

• OMOPCDMFeasibility.jl

  Public
  Julia

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  MIT License

  •0•3•0•4•Updated Nov 24, 2025Nov 24, 2025

• PubChemCrawler.jl

  Public
  Utilities to programmatically query the PubChem database

  xmlrest-apipubchem-database

  Julia

  •

  MIT License

  •6•28•1•1•Updated Sep 9, 2025Sep 9, 2025

• JuliaHealthZoo

  Public
  An example zoo of various health research workflows using Julia and JuliaHealth tools.

  0•0•3•0•Updated Sep 4, 2025Sep 4, 2025

• HealthBase.jl

  Public
  Common namespace for functions and interfaces in the JuliaHealth ecosystem

  Julia

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  MIT License

  •2•6•1•2•Updated Aug 28, 2025Aug 28, 2025

• OHDSIAPI.jl

  Public

  JuliaHealth/OHDSIAPI.jl’s past year of commit activity
  A Julia interface to a variety of OHDSI web or API-based services

  JavaScript

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  MIT License

  •2•2•0•4•Updated Aug 21, 2025Aug 21, 2025

• MedEval3D.jl

  Public

  JuliaHealth/MedEval3D.jl’s past year of commit activity
  Set of CUDA accelerated medical segmentation metrics.

  medicinecomputer-visionmetrics+ 1segmentation

  Julia

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  MIT License

  •4•4•1•1•Updated Aug 2, 2025Aug 2, 2025

• MedEye3d.jl

  Public

  JuliaHealth/MedEye3d.jl’s past year of commit activity
  Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data.

  open-sourceopengljulia-language+ 3medical-imagingsegmentationnuclear-medicine

  Jupyter Notebook

  •

  Apache License 2.0

  •2•16•15•0•Updated Jul 2, 2025Jul 2, 2025

• OMOPCommonDataModel.jl

  Public

  JuliaHealth/OMOPCommonDataModel.jl’s past year of commit activity
  Pure Julia implementation of the OMOP Common Data Model (CDM)

  juliajulia-languageohdsi+ 3cdmomopcommon-data-model

  Julia

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  MIT License

  •2•6•4•1•Updated Jun 9, 2025Jun 9, 2025

• GitHubAnalytics.jl

  Public
  Analyze various packages under a Github organization by generating visualizations.

  Julia

  •

  MIT License

  •1•2•1•0•Updated May 27, 2025May 27, 2025

• ITKIOWrapper.jl

  Public

  JuliaHealth/ITKIOWrapper.jl’s past year of commit activity
  ITKIOWrapper.jl provides wrapper functions in Julia from the InsightToolkit Image Registration functions.

  Julia

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  MIT License

  •1•1•2•0•Updated May 26, 2025May 26, 2025

• OMOPCDMCohortCreator.jl

  Public

  JuliaHealth/OMOPCDMCohortCreator.jl’s past year of commit activity
  Create cohorts from databases utilizing the OMOP CDM

  Julia

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  Other

  •6•11•15•4•Updated May 19, 2025May 19, 2025

• JuliaHealthWebsiteOld

  Public

  JuliaHealth/JuliaHealthWebsiteOld’s past year of commit activity
  Website for the JuliaHealth organization (powered by Franklin.jl).

  medicinejuliajulia-language+ 17healthbiomedical-informaticshealthcarepublic-healthhealth-careelectronic-health-recordsjulia-programming-language+ 10

  Julia

  •11•15•13•2•Updated May 16, 2025May 16, 2025

• MedPipe3D.jl

  Public
  Julia

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  MIT License

  •1•8•15•3•Updated Apr 16, 2025Apr 16, 2025

• IPUMS.jl

  Public
  A convenience package to work with IPUMS data

  Julia

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  MIT License

  •1•2•8•3•Updated Apr 9, 2025Apr 9, 2025

• OMOPCDMPathways.jl

  Public

  JuliaHealth/OMOPCDMPathways.jl’s past year of commit activity
  Finding pathways of interest within OMOPCDM data

  Julia

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  MIT License

  •1•3•4•8•Updated Mar 1, 2025Mar 1, 2025