Repositories list

• dnastack-client

  Public
  The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

  pythonclientworkflow+ 8

  pythonclientworkflowpython3omicsga4ghga4gh-wesdnastackga4gh-data-connectga4gh-service-registry+ 1

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•33 issues•3030 pull requests•Updated May 2, 2026May 2, 2026

• cromwell-wes-service

  Public
  Java

  •

  GNU Lesser General Public License v2.1

  •11 fork•1111 stars•11 issue•1010 pull requests•Updated May 1, 2026May 1, 2026

• HiFi-human-WGS-WDL

  Public
  WDL

  •

  BSD 3-Clause Clear License

  •5353 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• data-connect-trino

  Public
  Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto

  publisheractivetrino+ 1

  publisheractivetrinodata-connect

  Java

  •

  Apache License 2.0

  •33 forks•44 stars•33 issues•1111 pull requests•Updated May 1, 2026May 1, 2026

• logback-extensions

  Public
  Extensions to logback for smoother integration with cloud environments.

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•11 issue•1111 pull requests•Updated Apr 30, 2026Apr 30, 2026

• wdl-ci

  Public
  Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines

  wdl

  wdl

  Python

  •

  GNU General Public License v2.0

  •11 fork•55 stars•22 issues•1313 pull requests•Updated Apr 30, 2026Apr 30, 2026

• wdl-common

  Public
  Fork of PacBio's wdl-common repo

  WDL

  •

  BSD 3-Clause Clear License

  •1616 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• actuator-e2e-test

  Public
  Library for testing /actuator endpoint

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•11 issue•1010 pull requests•Updated Apr 30, 2026Apr 30, 2026

• spatial-transcriptomics-wf

  Public
  Repo for testing and developing a common human postmortem-derived brain sequencing (PMDBS) and non-human workflow harmonized across ASAP with human and mouse sp…

  WDL

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•22 pull requests•Updated Apr 26, 2026Apr 26, 2026

• wf-common

  Public
  Workflows and tasks reused across harmonized ASAP workflows

  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 26, 2026Apr 26, 2026

• cromwell-on-azure-workbench-engine-installer

  Public
  Documentation and tools for creating a CromwellOnAzure installation compatible with DNAstack's Workbench.

  HCL

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• concourse-oci-helm-chart-resource

  Public
  Concourse resource for Helm charts in OCI registries

  Go

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•1111 pull requests•Updated Apr 21, 2026Apr 21, 2026

• ga4gh-mcp-server

  Public
  MCP server exposing the full GA4GH ecosystem (57 tools) to AI clients — registry discovery + DRS, WES, TES, TRS, Beacon, htsget, refget, Data Connect

  Python

  •00 forks•22 stars•00 issues•11 pull request•Updated Apr 17, 2026Apr 17, 2026

• concourse-helm3-resource

  Public
  Concourse resource to deploy Helm v3 charts.

  Shell

  •6161 forks•00 stars•00 issues•99 pull requests•Updated Apr 17, 2026Apr 17, 2026

• iceberg

  Public archive
  Apache Iceberg

  Java

  •

  Apache License 2.0

  •3.2k3.2k forks•00 stars•00 issues•1010 pull requests•Updated Apr 16, 2026Apr 16, 2026

• traefik-modsecurity-plugin

  Public
  Traefik plugin to proxy requests to owasp/modsecurity-crs:apache container

  Go

  •

  Apache License 2.0

  •3030 forks•00 stars•00 issues•22 pull requests•Updated Apr 13, 2026Apr 13, 2026

• ga4gh-search-adapter-google-sheets

  Public archive
  Dataset API wrapper for Google Sheets

  Java

  •

  Apache License 2.0

  •00 forks•11 star•11 issue•1212 pull requests•Updated Apr 10, 2026Apr 10, 2026

• bioinformatics-public-docker-images

  Public
  Dockerfile

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• actuator-e2e-test-tag-check-test

  Public archive
  Library for testing /actuator endpoint

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 1, 2026Apr 1, 2026

• logback-extensions-tag-check-test

  Public archive
  Extensions to logback for smoother integration with cloud environments.

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 1, 2026Apr 1, 2026

• cromwell-on-gcp-workbench-engine-installer

  Public
  Documentation and tools for creating a Cromwell installation on GCP compatible with DNAstack's Workbench.

  HCL

  •

  GNU Lesser General Public License v2.1

  •00 forks•33 stars•00 issues•11 pull request•Updated Mar 16, 2026Mar 16, 2026

• HiFi-human-assembly-WDL

  Public
  WDL

  •

  BSD 3-Clause Clear License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• merge-tfvars

  Public
  Command line tool that merges Terraform .tfvars files as if they were all passed to Terraform separately

  Go

  •

  Mozilla Public License 2.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Mar 3, 2026Mar 3, 2026

• platform-interview-exercise

  Public
  00 forks•00 stars•00 issues•22 pull requests•Updated Mar 3, 2026Mar 3, 2026

• concourse-pipeline-jsonschema

  Public
  A Json Schema for Concourse Pipeline

  Go

  •

  Apache License 2.0

  •33 forks•00 stars•00 issues•22 pull requests•Updated Mar 3, 2026Mar 3, 2026

• pmdbs-bulk-rnaseq-wf

  Public
  Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP with human bulk RNA sequencing data

  WDL

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Mar 3, 2026Mar 3, 2026

• pmdbs-sc-rnaseq-wf

  Public
  Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP

  Python

  •

  Apache License 2.0

  •44 forks•00 stars•00 issues•22 pull requests•Updated Mar 3, 2026Mar 3, 2026

• temp-test-repo-three

  Public
  00 forks•00 stars•00 issues•11 pull request•Updated Mar 3, 2026Mar 3, 2026

• temp-test-repo-two

  Public
  00 forks•00 stars•00 issues•11 pull request•Updated Mar 3, 2026Mar 3, 2026

• temp-test-repo-one

  Public
  00 forks•00 stars•00 issues•11 pull request•Updated Mar 3, 2026Mar 3, 2026