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core: fix configuration file by removing 'conflicts' messages, #TASK-6565
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cellbase-core/src/main/resources/configuration.yml

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@@ -106,13 +106,6 @@ download:
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clinvar:
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2021-07.xml.gz
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-02.xml.gz
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<<<<<<< HEAD
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host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-11.xml.gz
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clinvarVariation:
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2021-07.xml.gz
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-02.xml.gz
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host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-11.xml.gz
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=======
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-11.xml.gz
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host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/RCV_xml_old_format/ClinVarFullRelease_2024-05.xml.gz
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version: 2024-05
@@ -122,10 +115,6 @@ download:
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# host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-11.xml.gz
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host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/VCV_xml_old_format/ClinVarVariationRelease_2024-05.xml.gz
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version: 2024-05
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<<<<<<< HEAD
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=======
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>>>>>>> release-6.2.x
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>>>>>>> release-6.x.x
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clinvarSummary:
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host: http://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz
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clinvarVariationAllele:
@@ -150,21 +139,10 @@ download:
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genomicSuperDups:
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host: http://hgdownload.cse.ucsc.edu/goldenPath
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gwasCatalog:
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=======
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host: http://resources.opencb.org/opencb/cellbase/data/gwas/gwas_catalog_v1.0.2-associations_e106_r2022-05-17.tsv
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version: "1.0.2 associations_e106_r2022-05-17"
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=======
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>>>>>>> release-6.x.x
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#host: http://resources.opencb.org/opencb/cellbase/data/gwas/gwas_catalog_v1.0.2-associations_e106_r2022-05-17.tsv
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host: "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/2024/05/20/gwas-catalog-associations_ontology-annotated.tsv"
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#version: "1.0.2 associations_e106_r2022-05-17"
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version: "2024-05-20"
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<<<<<<< HEAD
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=======
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>>>>>>> release-6.2.x
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>>>>>>> release-6.x.x
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hpo:
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host: https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/phenotype_to_genes.txt
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disgenet:

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