Merge pull request #68 from openalea/67-release-2025---structure-analysis

Release 2025 - stat_tool

Author: thomasarsouze

.github/workflows/conda-package-build.yml

@@ -1,21 +1,25 @@
-name: Building Package
+name: OpenAlea CI
 
 on:
   push:
     branches:
-      - '**'
+      - main
+      - master
     tags:
       - 'v*'
   pull_request:
-    branches:
-      - '**'
-
+    types:
+      - opened
+      - synchronize
+      - reopened
+  release:
+    types:
+      - published
 
 jobs:
   build:
-    uses: openalea/github-action-conda-build/.github/workflows/conda-package-build.yml@main
+    uses: openalea/action-build-publish-anaconda/.github/workflows/openalea_ci.yml@main
     with:
-      python-minor-version: '[8,9,10,11]'
-      build-options: ''
+      conda-directory: "./stat_tool/conda"
     secrets:
       anaconda_token: ${{ secrets.ANACONDA_TOKEN }}

stat_tool/.coveragerc

@@ -0,0 +1,17 @@
+[report]
+exclude_lines =
+    pragma: no cover
+omit =
+    *tests*
+show_missing = True
+
+[html]
+title = openalea.stat_tool coverage report
+directory = build/htmlcov
+
+[run]
+source = openalea.stat_tool
+omit =
+        *__init__*
+        *test*
+

stat_tool/.cruft.json

@@ -0,0 +1,23 @@
+{
+  "template": "https://github.com/openalea/cookiecutter-openalea",
+  "commit": "3c9c14f6b7964b5493c1eb80ea1cbd40af6c3d1d",
+  "checkout": null,
+  "context": {
+    "cookiecutter": {
+      "full_name": "Jean-Baptiste Durand",
+      "email": "Jean-Baptiste.Durand@cirad.fr",
+      "github_username": "openalea",
+      "project_name": "stat_tool",
+      "project_slug": "stat_tool",
+      "description": "Basic Statistical tools used by different Structure Analysis libraries.",
+      "pure_python": false,
+      "version": "1.3.0",
+      "_copy_without_render": [
+        ".github/workflows/openalea_ci.yml"
+      ],
+      "_template": "https://github.com/openalea/cookiecutter-openalea",
+      "_commit": "3c9c14f6b7964b5493c1eb80ea1cbd40af6c3d1d"
+    }
+  },
+  "directory": null
+}

stat_tool/.gitignore

@@ -0,0 +1,92 @@
+*.py[cod]
+.DS_Store
+# C extensions
+*.so
+
+# Packages
+*.egg
+*.egg-info
+build
+eggs
+.eggs
+parts
+var
+sdist
+develop-eggs
+.installed.cfg
+lib
+lib64
+MANIFEST
+**/__pycache__
+**/vpstat_tool
+CMakeFiles
+
+# Installer logs
+pip-log.txt
+npm-debug.log
+pip-selfcheck.json
+
+# Unit test / coverage reports
+.coverage
+.tox
+nosetests.xml
+htmlcov
+.cache
+.pytest_cache
+.mypy_cache
+
+# Translations
+*.mo
+
+# Mr Developer
+.mr.developer.cfg
+.project
+.pydevproject
+
+# SQLite
+test_exp_framework
+
+# npm
+node_modules/
+
+# dolphin
+.directory
+libpeerconnection.log
+
+# setuptools
+dist
+
+# IDE Files
+atlassian-ide-plugin.xml
+.idea/
+*.swp
+*.kate-swp
+.ropeproject/
+
+# Python3 Venv Files
+.venv/
+bin/
+include/
+lib/
+lib64
+pyvenv.cfg
+share/
+venv/
+.python-version
+
+# Cython
+*.c
+
+# Emacs backup
+*~
+
+# VSCode
+/.vscode
+
+# Automatically generated files
+docs/preconvert
+site/
+out
+
+# Sphinx
+_static

stat_tool/.readthedocs.yml

@@ -0,0 +1,13 @@
+version: 2
+
+build:
+  os: "ubuntu-22.04"
+  tools:
+    python: "mambaforge-22.9"
+
+conda:
+  environment: conda/environment.yml
+
+sphinx:
+  # Path to your Sphinx configuration file.
+  configuration: doc/conf.py