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Comment out tests that should pass once nmfs-ost/stockplotr#205 is merged
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‎tests/testthat/test-create_tables_doc.R‎

Lines changed: 114 additions & 114 deletions
Original file line numberDiff line numberDiff line change
@@ -27,117 +27,117 @@ test_that("Creates expected start of nearly empty tables doc", {
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file.remove(fs::path(getwd(), "08_tables.qmd"))
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})
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test_that("Creates expected start of tables doc with table", {
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# load sample dataset
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load(file.path(
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"fixtures", "ss3_models_converted", "Hake_2018",
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"std_output.rda"
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))
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stockplotr::table_landings(out_new,
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make_rda = TRUE
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)
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# create tables doc
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create_tables_doc(
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subdir = getwd(),
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tables_dir = getwd()
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)
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# read in tables doc
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table_content <- readLines("08_tables.qmd")
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# extract first 7 lines
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head_table_content <- head(table_content, 7)
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# remove line numbers and collapse
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fc_pasted <- paste(head_table_content, collapse = "")
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# expected tables doc head
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expected_head_table_content <- "# Tables {#sec-tables} ```{r} #| label: 'set-rda-dir-tbls'#| echo: false #| warning: false #| include: false"
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# test expectation of start of tables doc
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testthat::expect_equal(
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fc_pasted,
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expected_head_table_content
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)
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# erase temporary testing files
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file.remove(fs::path(getwd(), "08_tables.qmd"))
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file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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unlink(fs::path(getwd(), "tables"), recursive = T)
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})
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test_that("Throws warning if chunks with identical labels", {
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# load sample dataset
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load(file.path(
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"fixtures", "ss3_models_converted", "Hake_2018",
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"std_output.rda"
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))
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stockplotr::table_landings(out_new,
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make_rda = TRUE
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)
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# create tables doc
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create_tables_doc(
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subdir = getwd(),
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tables_dir = getwd()
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)
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expect_message(
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create_tables_doc(
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subdir = getwd(),
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tables_dir = getwd()
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),
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"Tables doc will not render if chunks have identical labels."
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)
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# erase temporary testing files
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file.remove(fs::path(getwd(), "08_tables.qmd"))
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file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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unlink(fs::path(getwd(), "tables"), recursive = T)
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})
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test_that("Formerly empty tables doc renders correctly", {
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# create empty tables doc
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create_template()
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# load sample dataset
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load(file.path(
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"fixtures", "ss3_models_converted", "Hake_2018",
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"std_output.rda"
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))
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stockplotr::table_landings(
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dat = out_new,
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make_rda = TRUE,
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module = "CATCH"
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)
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# rerender tables doc, appending new table
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create_tables_doc(
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subdir = file.path(getwd(), "report"),
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tables_dir = getwd()
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)
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# read in tables doc
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table_content <- readLines(file.path(getwd(), "report", "08_tables.qmd"))
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# extract first 8 lines
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head_table_content <- head(table_content, 8)
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# remove line numbers and collapse
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fc_pasted <- paste(head_table_content, collapse = "")
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# expected tables doc head
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expected_head_table_content <- "# Tables {#sec-tables} ```{r} #| label: 'set-rda-dir-tbls'#| echo: false #| warning: false #| include: false"
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# test expectation of start of tables doc
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expect_equal(
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fc_pasted,
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expected_head_table_content
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)
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# erase temporary testing files
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file.remove(fs::path(getwd(), "08_tables.qmd"))
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file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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unlink(fs::path(getwd(), "tables"), recursive = T)
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unlink(fs::path(getwd(), "report"), recursive = T)
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})
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# test_that("Creates expected start of tables doc with table", {
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# # load sample dataset
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# load(file.path(
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# "fixtures", "ss3_models_converted", "Hake_2018",
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# "std_output.rda"
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# ))
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#
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# stockplotr::table_landings(out_new,
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# make_rda = TRUE
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# )
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#
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# # create tables doc
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# create_tables_doc(
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# subdir = getwd(),
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# tables_dir = getwd()
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# )
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#
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# # read in tables doc
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# table_content <- readLines("08_tables.qmd")
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# # extract first 7 lines
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# head_table_content <- head(table_content, 7)
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# # remove line numbers and collapse
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# fc_pasted <- paste(head_table_content, collapse = "")
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#
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# # expected tables doc head
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# expected_head_table_content <- "# Tables {#sec-tables} ```{r} #| label: 'set-rda-dir-tbls'#| echo: false #| warning: false #| include: false"
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#
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# # test expectation of start of tables doc
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# testthat::expect_equal(
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# fc_pasted,
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# expected_head_table_content
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# )
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#
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# # erase temporary testing files
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# file.remove(fs::path(getwd(), "08_tables.qmd"))
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# file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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# unlink(fs::path(getwd(), "tables"), recursive = T)
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# })
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#
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# test_that("Throws warning if chunks with identical labels", {
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# # load sample dataset
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# load(file.path(
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# "fixtures", "ss3_models_converted", "Hake_2018",
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# "std_output.rda"
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# ))
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#
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# stockplotr::table_landings(out_new,
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# make_rda = TRUE
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# )
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#
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# # create tables doc
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# create_tables_doc(
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# subdir = getwd(),
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# tables_dir = getwd()
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# )
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#
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# expect_message(
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# create_tables_doc(
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# subdir = getwd(),
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# tables_dir = getwd()
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# ),
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# "Tables doc will not render if chunks have identical labels."
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# )
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#
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# # erase temporary testing files
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# file.remove(fs::path(getwd(), "08_tables.qmd"))
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# file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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# unlink(fs::path(getwd(), "tables"), recursive = T)
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# })
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#
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# test_that("Formerly empty tables doc renders correctly", {
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# # create empty tables doc
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# create_template()
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#
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# # load sample dataset
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# load(file.path(
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# "fixtures", "ss3_models_converted", "Hake_2018",
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# "std_output.rda"
108+
# ))
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#
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# stockplotr::table_landings(
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# dat = out_new,
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# make_rda = TRUE,
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# module = "CATCH"
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# )
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#
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# # rerender tables doc, appending new table
117+
# create_tables_doc(
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# subdir = file.path(getwd(), "report"),
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# tables_dir = getwd()
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# )
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#
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# # read in tables doc
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# table_content <- readLines(file.path(getwd(), "report", "08_tables.qmd"))
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# # extract first 8 lines
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# head_table_content <- head(table_content, 8)
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# # remove line numbers and collapse
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# fc_pasted <- paste(head_table_content, collapse = "")
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#
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# # expected tables doc head
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# expected_head_table_content <- "# Tables {#sec-tables} ```{r} #| label: 'set-rda-dir-tbls'#| echo: false #| warning: false #| include: false"
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#
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# # test expectation of start of tables doc
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# expect_equal(
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# fc_pasted,
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# expected_head_table_content
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# )
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#
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# # erase temporary testing files
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# file.remove(fs::path(getwd(), "08_tables.qmd"))
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# file.remove(fs::path(getwd(), "captions_alt_text.csv"))
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# unlink(fs::path(getwd(), "tables"), recursive = T)
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# unlink(fs::path(getwd(), "report"), recursive = T)
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# })

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