start

#!/bin/bash
set -euo pipefail

# Start - Set any environment variables here
# These are inherited by all processes, *except* RStudio
# USE export <parname>=value
# source this file to get the variables defined in the rocker Dockerfile
# this is a series of export cmds
if [ -f "${REPO_DIR}/env.txt" ]; then
    source "${REPO_DIR}/env.txt"
fi
# End - Set any environment variables here

# check for gh-scoped-creds needed variables so that can use this in RStudio
# These are based on Jupyter Hub config so will not know before server starts what these are.
for var in GH_SCOPED_CREDS_CLIENT_ID GH_SCOPED_CREDS_APP_URL; do
    if [[ -n "${!var:-}" ]]; then
        echo "${var}=\"${!var}\"" >> "${R_HOME}/etc/Renviron.site"
        echo "Added ${var} to Renviron.site"
    fi
done

# Run child start scripts in a subshell to contain its environment
# ${REPO_DIR}/childstart/ is created by setup-start.sh
if [ -d "${REPO_DIR}/childstart/" ]; then
    for script in ${REPO_DIR}/childstart/*; do
        if [ -f "$script" ]; then
            echo "Sourcing script: $script"
            source "$script" || {
                echo "Error: Failed to source $script. Moving on to the next script."
            }
        fi
    done
fi

# --- Set default VSCode code-server settings if missing ---
DEFAULT_SETTINGS_DIR="/usr/local/share/code-server/User"
USER_SETTINGS_DIR="/home/jovyan/.local/share/code-server/User"

# Ensure User settings directory exists
mkdir -p "${USER_SETTINGS_DIR}"
# Ensure directory to start vscode in exists; starting in $HOME is bad since vscode tries to index all the files
mkdir -p "${HOME}/vscode"
chown -R jovyan:jovyan "${HOME}/vscode"

if [ ! -f "${USER_SETTINGS_DIR}/settings.json" ]; then
    echo "Creating default VSCode settings.json..."
    cat > "${USER_SETTINGS_DIR}/settings.json" <<'EOF'
{
  "remote.autoForwardPorts": true,
  "remote.autoForwardPortsSource": "process",
  "remote.restoreForwardedPorts": false
}
EOF
    chown -R jovyan:jovyan "${USER_SETTINGS_DIR}"
else
    echo "User already has VSCode settings.json, not overwriting."
fi
exec "$@"