From 65a0987eee59c9df665022915e752565afc4a7ba Mon Sep 17 00:00:00 2001
From: Victor Lin <vlin@fredhutch.org>
Date: Thu, 12 Mar 2026 16:04:28 -0700
Subject: [PATCH] Sync pathogen repo list

Generated programmatically using:

    gh api --paginate "search/code?q=org:nextstrain+-repo:nextstrain/pathogen-repo-guide+path:phylogenetic/build-configs/ci+filename:config.yaml" | \
    jq -r '.items[] | "          - \(.repository.name)"' | \
    sort -f
---
 .github/workflows/ci.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 6569eee..a3feed9 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -309,10 +309,13 @@ jobs:
           - measles
           - mpox
           - mumps
+          - nipah
+          - norovirus
           - oropouche
           - rabies
+          - rubella
           - seasonal-cov
-          - wnv
+          - WNV
           - yellow-fever
           - zika