From 5934a04c299c3bd03085301b1b2c070a330f18a2 Mon Sep 17 00:00:00 2001
From: Barbara Novak <19824106+bnovak32@users.noreply.github.com>
Date: Wed, 4 Mar 2026 18:30:20 -0800
Subject: [PATCH 1/2] Update check_typos.yml

switched typos check to warning instead of error
---
 .github/workflows/check_typos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/check_typos.yml b/.github/workflows/check_typos.yml
index 600f3d3d2..1a89fdc1a 100644
--- a/.github/workflows/check_typos.yml
+++ b/.github/workflows/check_typos.yml
@@ -20,3 +20,4 @@ jobs:
               check_filenames: true
               skip: "*.yml,*.cff,*.js,*.lock"
               ignore_words_list: RNAseq
+              only_warn: 1

From 8880ef7ed6baca21951efb2b34a83f2d83d468a2 Mon Sep 17 00:00:00 2001
From: Barbara Novak <19824106+bnovak32@users.noreply.github.com>
Date: Wed, 4 Mar 2026 18:38:25 -0800
Subject: [PATCH 2/2] updated markdown-link-check.yml

- restrict to checking only modified files
---
 .github/workflows/markdown-link-check.yml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/markdown-link-check.yml b/.github/workflows/markdown-link-check.yml
index 04a60dc9e..401209537 100644
--- a/.github/workflows/markdown-link-check.yml
+++ b/.github/workflows/markdown-link-check.yml
@@ -7,4 +7,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@master
-    - uses: gaurav-nelson/github-action-markdown-link-check@v1
+    - uses: tcort/github-action-markdown-link-check@v1
+      with:
+        use-quiet-mode: 'yes'
+        use-verbose-mode: 'yes'
+        check-modified-files-only: 'yes'