I'm merging some patches and find that included files have been edited. When I check the merge for errors, I get lots of errors:
[00:00] Start: Checking for Errors [00:00] Checking for Errors in [2F] Snazzy Overhaul Patches Merged.esp [00:00] [REFR:2F0009A9] (places DBM_DISPACTSUTBlueEmeraldSkull "Blue Emerald Skull" [ACTI:2F0009AA] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F0009B5] (places DBM_DISPACTSUTMysteriousSkull "Mysterious Skull" [ACTI:2F0009B6] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F0009E1] (places DBM_DISPACTSUTGoldenCandlestick "Golden Candlestick" [ACTI:2F0009E2] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a STAT reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A0D] (places DBM_DISPACTSUTGreenEmeraldSkull "Green Emerald Skull" [ACTI:2F000A0E] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a DOOR reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A39] (places DBM_DISPACTSUTPinkSapphireSkull "Pink Sapphire Skull" [ACTI:2F000A3A] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A43] (places DBM_DISPACTSUTRubyTrollSkull "Ruby Troll Skull" [ACTI:2F000A44] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a FURN reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A4F] (places DBM_DISPACTSUTGoldSkeletonHand "Gold Skeleton Hand" [ACTI:2F000A50] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a STAT reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:18836705] (places _GlobalComplete_SUT [GLOB:2F000800] in GRUP Cell Temporary Children of 0GM_AssetsCell "Paintings" [CELL:18005955]) [00:00] REFR \ NAME - Base -> Found a GLOB reference, expected: ACTI,ADDN,ALCH,AMMO,APPA,ARMA,ARMO,ARTO,ASPC,BOOK,CONT,DOOR,FLOR,FURN,GRAS,IDLM,INGR,KEYM,LIGH,LVLC,LVLN,MISC,MSTT,SCRL,SLGM,SNDR,SOUN,SPEL,STAT,TACT,TREE,TXST,WEAP [00:00] [REFR:18878481] (places _GlobalComplete_SUT [GLOB:2F000800] in GRUP Cell Temporary Children of 0GM_AssetsCell "Paintings" [CELL:18005955]) [00:00] REFR \ NAME - Base -> Found a GLOB reference, expected: ACTI,ADDN,ALCH,AMMO,APPA,ARMA,ARMO,ARTO,ASPC,BOOK,CONT,DOOR,FLOR,FURN,GRAS,IDLM,INGR,KEYM,LIGH,LVLC,LVLN,MISC,MSTT,SCRL,SLGM,SNDR,SOUN,SPEL,STAT,TACT,TREE,TXST,WEAP [00:00] Done: Checking for Errors, Processed Records: 4427, Errors found: 9, Elapsed Time: 00:00

I'm merging some patches and find that included files have been edited. When I check the merge for errors, I get lots of errors:
[00:00] Start: Checking for Errors [00:00] Checking for Errors in [2F] Snazzy Overhaul Patches Merged.esp [00:00] [REFR:2F0009A9] (places DBM_DISPACTSUTBlueEmeraldSkull "Blue Emerald Skull" [ACTI:2F0009AA] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F0009B5] (places DBM_DISPACTSUTMysteriousSkull "Mysterious Skull" [ACTI:2F0009B6] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F0009E1] (places DBM_DISPACTSUTGoldenCandlestick "Golden Candlestick" [ACTI:2F0009E2] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a STAT reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A0D] (places DBM_DISPACTSUTGreenEmeraldSkull "Green Emerald Skull" [ACTI:2F000A0E] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a DOOR reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A39] (places DBM_DISPACTSUTPinkSapphireSkull "Pink Sapphire Skull" [ACTI:2F000A3A] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a GLOB reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A43] (places DBM_DISPACTSUTRubyTrollSkull "Ruby Troll Skull" [ACTI:2F000A44] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a FURN reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:2F000A4F] (places DBM_DISPACTSUTGoldSkeletonHand "Gold Skeleton Hand" [ACTI:2F000A50] in GRUP Cell Temporary Children of DBMDGEastExhibitHalls "East Exhibit Halls" [CELL:0B125C71]) [00:00] REFR \ Linked References \ XLKR - Linked Reference \ Ref -> Found a STAT reference, expected: ACHR,PARW,PBAR,PBEA,PCON,PFLA,PGRE,PHZD,PLYR,PMIS,REFR [00:00] [REFR:18836705] (places _GlobalComplete_SUT [GLOB:2F000800] in GRUP Cell Temporary Children of 0GM_AssetsCell "Paintings" [CELL:18005955]) [00:00] REFR \ NAME - Base -> Found a GLOB reference, expected: ACTI,ADDN,ALCH,AMMO,APPA,ARMA,ARMO,ARTO,ASPC,BOOK,CONT,DOOR,FLOR,FURN,GRAS,IDLM,INGR,KEYM,LIGH,LVLC,LVLN,MISC,MSTT,SCRL,SLGM,SNDR,SOUN,SPEL,STAT,TACT,TREE,TXST,WEAP [00:00] [REFR:18878481] (places _GlobalComplete_SUT [GLOB:2F000800] in GRUP Cell Temporary Children of 0GM_AssetsCell "Paintings" [CELL:18005955]) [00:00] REFR \ NAME - Base -> Found a GLOB reference, expected: ACTI,ADDN,ALCH,AMMO,APPA,ARMA,ARMO,ARTO,ASPC,BOOK,CONT,DOOR,FLOR,FURN,GRAS,IDLM,INGR,KEYM,LIGH,LVLC,LVLN,MISC,MSTT,SCRL,SLGM,SNDR,SOUN,SPEL,STAT,TACT,TREE,TXST,WEAP [00:00] Done: Checking for Errors, Processed Records: 4427, Errors found: 9, Elapsed Time: 00:00