diff --git a/docs/manuscript/manuscript.md b/docs/manuscript/manuscript.md
index 9a57b05f..63aa5f20 100644
--- a/docs/manuscript/manuscript.md
+++ b/docs/manuscript/manuscript.md
@@ -98,7 +98,7 @@ CVS schemas are authored in YAML following LinkML syntax. Each schema file defin
 
 ```yaml
 name: schema_name
-id: https://w3id.org/linkml/valuesets/domain/schema_name
+id: https://w3id.org/valuesets/domain/schema_name
 prefixes:
   ontology_prefix: http://purl.obolibrary.org/obo/ONTOLOGY_
 
diff --git a/docs/schema/valuesets.yaml b/docs/schema/valuesets.yaml
index cf0790d5..d9d7f5a3 100644
--- a/docs/schema/valuesets.yaml
+++ b/docs/schema/valuesets.yaml
@@ -3,7 +3,7 @@ description: A collection of commonly used value sets
 title: valuesets
 see_also:
 - https://linkml.github.io/valuesets
-id: https://w3id.org/linkml/valuesets
+id: https://w3id.org/valuesets
 imports:
 - core
 - contributor
@@ -1323,7 +1323,7 @@ enums:
       computational analysis, phylogenetic inference, author statements, or electronic
       annotation. All codes except IEA represent manual curation.
     title: GO Evidence Code
-    from_schema: https://w3id.org/linkml/valuesets/bio/go_evidence
+    from_schema: https://w3id.org/valuesets/bio/go_evidence
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -1840,7 +1840,7 @@ enums:
     description: Electronic annotation methods used in Gene Ontology, identified by
       GO_REF codes
     title: GO Electronic Methods
-    from_schema: https://w3id.org/linkml/valuesets/bio/go_evidence
+    from_schema: https://w3id.org/valuesets/bio/go_evidence
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -1932,7 +1932,7 @@ enums:
     instantiates:
     - valuesets_meta:ValueSetEnumDefinition
     title: Organism Taxon
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -1951,7 +1951,7 @@ enums:
     description: Common model organisms used in biological research, mapped to NCBI
       Taxonomy IDs
     title: Common Organism Taxa
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2384,7 +2384,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard taxonomic ranks used in biological classification
     title: Taxonomic Rank
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2451,7 +2451,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major kingdoms/domains of life
     title: Biological Kingdom
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2497,7 +2497,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major phases of the eukaryotic cell cycle
     title: Cell Cycle Phase
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2575,7 +2575,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Stages of mitosis (M phase)
     title: Mitotic Phase
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2655,7 +2655,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Cell cycle checkpoints that regulate progression
     title: Cell Cycle Checkpoint
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2719,7 +2719,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Phases specific to meiotic cell division
     title: Meiotic Phase
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2831,7 +2831,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of cell cycle regulatory molecules
     title: Cell Cycle Regulator
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2908,7 +2908,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Cell proliferation and growth states
     title: Cell Proliferation State
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -2977,7 +2977,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: DNA damage response pathways during cell cycle
     title: DNA Damage Response
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3022,7 +3022,7 @@ enums:
 
       Organized hierarchically following the Sequence Ontology structure.'
     title: Genome Feature Type
-    from_schema: https://w3id.org/linkml/valuesets/bio/genome_features
+    from_schema: https://w3id.org/valuesets/bio/genome_features
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3442,7 +3442,7 @@ enums:
 
       including organs, tissues, and body parts'
     title: Metazoan Anatomical Structure
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3461,7 +3461,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Anatomical structures specific to humans (Homo sapiens)
     title: Human Anatomical Structure
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3480,7 +3480,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Any anatomical structure found in plant organisms
     title: Plant Anatomical Structure
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3501,7 +3501,7 @@ enums:
 
       including native and experimentally modified cells'
     title: Cell Type
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3520,7 +3520,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Neuron cell types from the Cell Ontology
     title: Neuron Type
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3539,7 +3539,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Immune system cell types (leukocytes and their subtypes)
     title: Immune Cell
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3558,7 +3558,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Stem cell types and progenitor cells
     title: Stem Cell
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3578,7 +3578,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Human diseases from the Mondo Disease Ontology
     title: Disease
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3597,7 +3597,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Infectious diseases caused by pathogenic organisms
     title: Infectious Disease
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3616,7 +3616,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Neoplastic and cancerous diseases
     title: Cancer
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3636,7 +3636,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Hereditary and genetic diseases
     title: Genetic Disease
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3656,7 +3656,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Any chemical entity from ChEBI ontology
     title: Chemical Entity
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3675,7 +3675,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Pharmaceutical drugs and medications
     title: Drug
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3695,7 +3695,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Metabolites and metabolic intermediates
     title: Metabolite
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3714,7 +3714,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Proteins and protein complexes
     title: Protein
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3733,7 +3733,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Phenotypic abnormalities from Human Phenotype Ontology
     title: Phenotype
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3752,7 +3752,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Clinical findings and observations
     title: Clinical Finding
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3771,7 +3771,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Biological processes from Gene Ontology
     title: Biological Process
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3790,7 +3790,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Metabolic processes and pathways
     title: Metabolic Process
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3809,7 +3809,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Molecular functions from Gene Ontology
     title: Molecular Function
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3828,7 +3828,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Cellular components and locations from Gene Ontology
     title: Cellular Component
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3847,7 +3847,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sequence features from the Sequence Ontology
     title: Sequence Feature
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3866,7 +3866,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Gene-related sequence features
     title: Gene Feature
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3885,7 +3885,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Environmental systems and biomes
     title: Environment
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3905,7 +3905,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Environmental materials and substances
     title: Environmental Material
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3924,7 +3924,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Phenotypic qualities and attributes from PATO
     title: Quality
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -3943,7 +3943,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Physical qualities like size, shape, color
     title: Physical Quality
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -5002,7 +5002,7 @@ enums:
     description: Biosafety levels (BSL) defining containment requirements for biological
       agents
     title: Biosafety Level
-    from_schema: https://w3id.org/linkml/valuesets/bio/biosafety
+    from_schema: https://w3id.org/valuesets/bio/biosafety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -5055,7 +5055,7 @@ enums:
     description: INSDC (International Nucleotide Sequence Database Collaboration)
       controlled vocabulary for missing values in sequence records
     title: Insdc Missing Value
-    from_schema: https://w3id.org/linkml/valuesets/bio/insdc_missing_values
+    from_schema: https://w3id.org/valuesets/bio/insdc_missing_values
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -5189,7 +5189,7 @@ enums:
       Countries use ISO 3166-1 alpha-2 codes from Library of Congress as canonical
       identifiers.'
     title: Insdc Geographic Location
-    from_schema: https://w3id.org/linkml/valuesets/bio/insdc_geographic_locations
+    from_schema: https://w3id.org/valuesets/bio/insdc_geographic_locations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -6415,7 +6415,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of viral genomes based on Baltimore classification
     title: Viral Genome Type
-    from_schema: https://w3id.org/linkml/valuesets/bio/viral_genome_types
+    from_schema: https://w3id.org/valuesets/bio/viral_genome_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -6523,7 +6523,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Plant reproductive and sexual system types
     title: Plant Sex
-    from_schema: https://w3id.org/linkml/valuesets/bio/plant_sex
+    from_schema: https://w3id.org/valuesets/bio/plant_sex
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -6653,7 +6653,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Organism's relationship to oxygen for growth and survival
     title: Rel To Oxygen
-    from_schema: https://w3id.org/linkml/valuesets/bio/relationship_to_oxygen
+    from_schema: https://w3id.org/valuesets/bio/relationship_to_oxygen
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -6704,7 +6704,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Trophic levels are the feeding position in a food chain
     title: Trophic Level
-    from_schema: https://w3id.org/linkml/valuesets/bio/trophic_levels
+    from_schema: https://w3id.org/valuesets/bio/trophic_levels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7242,7 +7242,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Days of the week following ISO 8601 standard (Monday = 1)
     title: Day Of Week
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7353,7 +7353,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Months of the year
     title: Month
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7546,7 +7546,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Calendar quarters
     title: Quarter
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7587,7 +7587,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Seasons of the year (Northern Hemisphere)
     title: Season
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7647,7 +7647,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common time periods and intervals
     title: Time Period
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7723,7 +7723,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common times of day
     title: Time Of Day
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7785,7 +7785,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common business and financial time frames
     title: Business Time Frame
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7881,7 +7881,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major geological eras
     title: Geological Era
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7906,7 +7906,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major historical periods
     title: Historical Period
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -7949,7 +7949,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of academic and research publications
     title: Publication Type
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8148,7 +8148,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Status of peer review process
     title: Peer Review Status
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8200,7 +8200,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Academic degrees and qualifications
     title: Academic Degree
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8456,7 +8456,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common software and content licenses
     title: License Type
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8547,7 +8547,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major research fields and disciplines
     title: Research Field
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8677,7 +8677,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of research funding
     title: Funding Type
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -8722,7 +8722,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sections of a scientific manuscript or publication
     title: Manuscript Section
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9086,7 +9086,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Roles in research and authorship
     title: Research Role
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9187,7 +9187,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of open access publishing
     title: Open Access Type
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9221,7 +9221,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common citation and reference styles
     title: Citation Style
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9285,7 +9285,7 @@ enums:
     comments:
     - All organization names mapped to ROR (Research Organization Registry) identifiers
     - See https://www.energy.gov/national-laboratories for official information
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9651,7 +9651,7 @@ enums:
     comments:
     - All agency names mapped to ROR (Research Organization Registry) identifiers
     - Includes primary research funding agencies
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -9827,7 +9827,7 @@ enums:
     comments:
     - All mapped to ROR (Research Organization Registry) identifiers
     - Focuses on major funding institutes
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10039,7 +10039,7 @@ enums:
     comments:
     - All mapped to ROR (Research Organization Registry) identifiers where available
     - Includes standards bodies commonly referenced in research
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10128,7 +10128,7 @@ enums:
     comments:
     - All mapped to ROR (Research Organization Registry) identifiers
     - Includes major UN agencies relevant to research and development
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10219,7 +10219,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of energy sources and generation methods
     title: Energy Source
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10569,7 +10569,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Units for measuring energy
     title: Energy Unit
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10805,7 +10805,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Units for measuring power (energy per time)
     title: Power Unit
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -10915,7 +10915,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Energy efficiency ratings and standards
     title: Energy Efficiency Rating
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11042,7 +11042,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Building energy efficiency standards and certifications
     title: Building Energy Standard
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11094,7 +11094,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of electrical grid systems
     title: Grid Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11131,7 +11131,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of battery technologies for energy storage
     title: Battery Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     exact_mappings:
     - OEO:00000068
     - brick:Battery
@@ -11258,7 +11258,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of photovoltaic cell technologies
     title: Photovoltaic Cell Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     see_also:
     - OEO:00000348
     contributors:
@@ -11457,7 +11457,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of photovoltaic system installations
     title: Photovoltaic System Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     exact_mappings:
     - OEO:00000324
     contributors:
@@ -11576,7 +11576,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of energy storage systems (categories)
     title: Energy Storage Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11696,7 +11696,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Greenhouse gas emission scopes (GHG Protocol)
     title: Emission Scope
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     see_also:
     - OEO:00000147
     - OEO:00000020
@@ -11772,7 +11772,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Carbon intensity levels for energy sources
     title: Carbon Intensity
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11827,7 +11827,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of electricity markets and pricing
     title: Electricity Market
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11872,7 +11872,7 @@ enums:
       Applicable to energy facilities, research capabilities, and other infrastructure
       throughout their lifecycle.
     title: Capability Status
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     see_also:
     - https://www.wikidata.org/wiki/Property:P5817
     - https://www.iaea.org/topics/nuclear-power-plant-life-cycle
@@ -11958,7 +11958,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of fossil fuels used for energy generation
     title: Fossil Fuel Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/fossil_fuels
+    from_schema: https://w3id.org/valuesets/energy/fossil_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -11986,7 +11986,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear reactor types based on design and operational characteristics
     title: Reactor Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12297,7 +12297,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear reactor generational classifications
     title: Reactor Generation
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12392,7 +12392,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Primary coolant types used in nuclear reactors
     title: Reactor Coolant
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12526,7 +12526,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Neutron moderator types used in nuclear reactors
     title: Reactor Moderator
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12609,7 +12609,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Neutron energy spectrum classifications
     title: Reactor Neutron Spectrum
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12661,7 +12661,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear reactor size classifications
     title: Reactor Size Category
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12735,7 +12735,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear fuel materials and compositions
     title: Nuclear Fuel Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -12992,7 +12992,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard uranium-235 enrichment level classifications
     title: Uranium Enrichment Level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13089,7 +13089,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Physical forms of nuclear fuel
     title: Fuel Form
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13199,7 +13199,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of fuel assembly configurations
     title: Fuel Assembly Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13301,7 +13301,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Stages in the nuclear fuel cycle
     title: Fuel Cycle Stage
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13420,7 +13420,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Fissile isotopes used in nuclear fuel
     title: Fissile Isotope
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13510,7 +13510,7 @@ enums:
     description: IAEA General Safety Requirements radioactive waste classification
       scheme
     title: IAEA Waste Classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13647,7 +13647,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: US NRC 10 CFR 61 low-level radioactive waste classification
     title: NRC Waste Class
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13746,7 +13746,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Heat generation categories for radioactive waste
     title: Waste Heat Generation
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13804,7 +13804,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Half-life categories for radioactive waste classification
     title: Waste Half Life Category
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13862,7 +13862,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods for radioactive waste disposal
     title: Waste Disposal Method
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -13965,7 +13965,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sources of radioactive waste generation
     title: Waste Source
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14090,7 +14090,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Transuranic waste classifications (US system)
     title: Transuranic Waste Category
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14158,7 +14158,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: International Nuclear and Radiological Event Scale (INES) levels
     title: INES Level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14319,7 +14319,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear emergency action levels and classifications
     title: Emergency Classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14417,7 +14417,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: IAEA nuclear material security categories (INFCIRC/225)
     title: Nuclear Security Category
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14509,7 +14509,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear safety system classifications (based on IEEE and ASME standards)
     title: Safety System Class
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14591,7 +14591,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Fundamental nuclear reactor safety functions
     title: Reactor Safety Function
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14686,7 +14686,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Defense in depth barrier levels for nuclear safety
     title: Defense In Depth Level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14770,7 +14770,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Radiation protection zone classifications for nuclear facilities
     title: Radiation Protection Zone
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -14873,7 +14873,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear facilities and infrastructure
     title: Nuclear Facility Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15156,7 +15156,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Operational status of nuclear power plants
     title: Power Plant Status
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15281,7 +15281,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of research reactors
     title: Research Reactor Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15392,7 +15392,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear fuel cycle facilities
     title: Fuel Cycle Facility Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15531,7 +15531,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear waste management facilities
     title: Waste Facility Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15670,7 +15670,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear-powered vessels
     title: Nuclear Ship Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -15785,7 +15785,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Operational states of nuclear reactors
     title: Reactor Operating State
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16002,7 +16002,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of nuclear facility maintenance activities
     title: Maintenance Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16151,7 +16151,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear facility licensing stages
     title: Licensing Stage
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16300,7 +16300,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Nuclear fuel cycle operational activities
     title: Fuel Cycle Operation
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16498,7 +16498,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Reactor control and safety system operational modes
     title: Reactor Control Mode
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16613,7 +16613,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard nuclear facility operational procedures
     title: Operational Procedure
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16763,7 +16763,7 @@ enums:
     description: Types of geothermal energy systems, including conventional hydrothermal
       and enhanced/engineered geothermal systems.
     title: Geothermal System Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     see_also:
     - https://www.energy.gov/eere/geothermal/enhanced-geothermal-systems
     - https://gdr.openei.org/
@@ -16852,7 +16852,7 @@ enums:
     description: Classification of geothermal reservoirs by geological setting and
       characteristics.
     title: Geothermal Reservoir Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16905,7 +16905,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of wells used in geothermal energy development and production.
     title: Geothermal Well Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -16951,7 +16951,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Applications and uses of geothermal energy.
     title: Geothermal Application
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -17006,7 +17006,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification of geothermal resources by temperature range.
     title: Geothermal Resource Temperature Classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -17058,7 +17058,7 @@ enums:
       and carbon intensity. This informal industry taxonomy differentiates hydrogen
       by its carbon footprint and energy source.
     title: Hydrogen Type (Color Classification)
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     see_also:
     - https://www.energy.gov/eere/fuelcells/hydrogen-production
     - https://www.nationalgrid.com/stories/energy-explained/hydrogen-colour-spectrum
@@ -17246,7 +17246,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods and processes for producing hydrogen.
     title: Hydrogen Production Method
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     see_also:
     - https://www.energy.gov/eere/fuelcells/hydrogen-production
     contributors:
@@ -17418,7 +17418,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods for storing hydrogen for later use or transport.
     title: Hydrogen Storage Method
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -17498,7 +17498,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: End-use applications for hydrogen.
     title: Hydrogen Application
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -17568,7 +17568,7 @@ enums:
       Includes dedicated energy crops, agricultural residues, forest residues, and
       waste streams.
     title: Biomass Feedstock Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     see_also:
     - https://www.energy.gov/eere/bioenergy/feedstock-technologies
     - https://www.energy.gov/eere/bioenergy/biomass-resources
@@ -17830,7 +17830,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of fuels produced from biomass feedstocks.
     title: Biofuel Type
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     see_also:
     - https://www.energy.gov/eere/bioenergy/full-text-glossary
     contributors:
@@ -17978,7 +17978,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification of biofuels by feedstock source and technology generation.
     title: Biofuel Generation
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -18047,7 +18047,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Processes for converting biomass feedstocks into biofuels and bioproducts.
     title: Bioconversion Process
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -18214,7 +18214,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of mining operations
     title: Mining Type
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -18395,7 +18395,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Categories of minerals and materials
     title: Mineral Category
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -18485,7 +18485,7 @@ enums:
 
       Based on US Geological Survey and EU critical raw materials lists.'
     title: Critical Mineral
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19175,7 +19175,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common minerals extracted through mining
     title: Common Mineral
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19414,7 +19414,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of mining equipment
     title: Mining Equipment
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19549,7 +19549,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification of ore grades
     title: Ore Grade
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19610,7 +19610,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Phases of mining operations
     title: Mining Phase
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19672,7 +19672,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Mining-related hazards and risks
     title: Mining Hazard
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19767,7 +19767,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Environmental impacts of mining
     title: Environmental Impact
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19839,7 +19839,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of extractive industry facilities
     title: Extractive Industry Facility Type
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19864,7 +19864,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of products extracted from extractive industry facilities
     title: Extractive Industry Product Type
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19910,7 +19910,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods used for extracting minerals from the earth
     title: Mining Method
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19939,7 +19939,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of wells used for extracting fluid resources
     title: Well Type
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19968,7 +19968,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of prediction outcomes for classification tasks
     title: Outcome Type
-    from_schema: https://w3id.org/linkml/valuesets/statistics/prediction_outcomes
+    from_schema: https://w3id.org/valuesets/statistics/prediction_outcomes
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -19997,7 +19997,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Vital status of a person (living or deceased)
     title: Person Status
-    from_schema: https://w3id.org/linkml/valuesets/social/person_status
+    from_schema: https://w3id.org/valuesets/social/person_status
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -21322,7 +21322,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common MIME types for various file formats
     title: Mime Type
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -21595,7 +21595,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Categories of MIME types
     title: Mime Type Category
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -21635,7 +21635,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Character encodings for text content
     title: Text Charset
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -21681,7 +21681,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Compression types used with Content-Encoding
     title: Compression Type
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24123,7 +24123,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard labels for sentiment analysis classification tasks
     title: Sentiment Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+    from_schema: https://w3id.org/valuesets/data_science/sentiment_analysis
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24162,7 +24162,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Fine-grained sentiment analysis labels with intensity levels
     title: Fine Sentiment Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+    from_schema: https://w3id.org/valuesets/data_science/sentiment_analysis
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24217,7 +24217,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Generic binary classification labels
     title: Binary Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24250,7 +24250,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard labels for spam/ham email classification
     title: Spam Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24284,7 +24284,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Labels for anomaly detection tasks
     title: Anomaly Detection
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24316,7 +24316,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Customer churn prediction labels
     title: Churn Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24352,7 +24352,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Fraud detection classification labels
     title: Fraud Detection
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24383,7 +24383,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Quality control classification labels
     title: Quality Control
-    from_schema: https://w3id.org/linkml/valuesets/data_science/quality_control
+    from_schema: https://w3id.org/valuesets/data_science/quality_control
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24416,7 +24416,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Manufacturing defect classification
     title: Defect Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/quality_control
+    from_schema: https://w3id.org/valuesets/data_science/quality_control
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24463,7 +24463,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Ekman's six basic emotions commonly used in emotion recognition
     title: Basic Emotion
-    from_schema: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+    from_schema: https://w3id.org/valuesets/data_science/emotion_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24526,7 +24526,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Extended emotion set including complex emotions
     title: Extended Emotion
-    from_schema: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+    from_schema: https://w3id.org/valuesets/data_science/emotion_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24592,7 +24592,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard priority levels for task/issue classification
     title: Priority Level
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24646,7 +24646,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Severity levels for incident/bug classification
     title: Severity Level
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24691,7 +24691,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Confidence levels for predictions and classifications
     title: Confidence Level
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24739,7 +24739,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common news article topic categories
     title: News Topic Category
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24803,7 +24803,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Text toxicity classification labels
     title: Toxicity Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24858,7 +24858,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common chatbot/NLU intent categories
     title: Intent Classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24911,7 +24911,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Basic spatial directional terms for general use
     title: Simple Spatial Direction
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -24996,7 +24996,7 @@ enums:
       An anatomical region bounded by a plane perpendicular to an axis through the
       middle.'
     title: Anatomical Side
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25191,7 +25191,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Anatomical regions based on spatial position
     title: Anatomical Region
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25276,7 +25276,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Anatomical axes defining spatial organization
     title: Anatomical Axis
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25339,7 +25339,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard anatomical planes for sectioning
     title: Anatomical Plane
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25418,7 +25418,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Spatial relationships between anatomical structures
     title: Spatial Relationship
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25517,7 +25517,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Spatial polarity in cells and tissues
     title: Cell Polarity
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25583,7 +25583,7 @@ enums:
     definition_uri: https://w3id.org/valuesets/AnatomicalOrientation
     description: Directional orientation between anatomical positions based on OME
       NGFF specification
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     permissible_values:
       LEFT_TO_RIGHT:
         text: LEFT_TO_RIGHT
@@ -25763,7 +25763,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: The seven crystal systems in crystallography
     title: Crystal System
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/crystal_structures
+    from_schema: https://w3id.org/valuesets/materials_science/crystal_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25827,7 +25827,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: The 14 Bravais lattices describing all possible crystal lattices
     title: Bravais Lattice
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/crystal_structures
+    from_schema: https://w3id.org/valuesets/materials_science/crystal_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25929,7 +25929,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification of materials by electrical conductivity
     title: Electrical Conductivity
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -25968,7 +25968,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification of materials by magnetic properties
     title: Magnetic Property
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26001,7 +26001,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Optical properties of materials
     title: Optical Property
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26044,7 +26044,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Classification by thermal conductivity
     title: Thermal Conductivity
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26073,7 +26073,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Mechanical behavior of materials under stress
     title: Mechanical Behavior
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26117,7 +26117,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Microscopy techniques for material characterization
     title: Microscopy Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26186,7 +26186,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Spectroscopy techniques for material analysis
     title: Spectroscopy Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26263,7 +26263,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Thermal analysis techniques
     title: Thermal Analysis Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26311,7 +26311,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Mechanical testing methods
     title: Mechanical Testing Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26356,7 +26356,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Major classes of materials
     title: Material Class
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26411,7 +26411,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of polymer materials
     title: Polymer Type
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26456,7 +26456,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of metallic materials
     title: Metal Type
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26499,7 +26499,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of composite materials
     title: Composite Type
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26546,7 +26546,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Common material synthesis and processing methods
     title: Synthesis Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26648,7 +26648,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods for growing single crystals
     title: Crystal Growth Method
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -26715,7 +26715,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: 3D printing and additive manufacturing methods
     title: Additive Manufacturing
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -31865,7 +31865,7 @@ enums:
 
       Used in FASTA and other sequence formats to represent uncertain nucleotides.'
     title: IUPAC Nucleotide Ambiguity Codes
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -31938,7 +31938,7 @@ enums:
     description: The 20 standard proteinogenic amino acids with IUPAC single-letter
       codes
     title: Standard Amino Acids
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32033,7 +32033,7 @@ enums:
 
       rare amino acids, and ambiguity codes'
     title: IUPAC Amino Acid Codes
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32158,7 +32158,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of sequence alphabets used in bioinformatics
     title: Sequence Alphabet Types
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32201,7 +32201,7 @@ enums:
 
       Different platforms and software versions use different ASCII offsets.'
     title: Sequence Quality Score Encodings
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32281,7 +32281,7 @@ enums:
 
       Table 1 is the universal genetic code used by most organisms.'
     title: NCBI Genetic Code Translation Tables
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32534,7 +32534,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Strand orientation for nucleic acid sequences
     title: DNA/RNA Strand Orientation
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32561,7 +32561,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Topological structure of nucleic acid molecules
     title: Sequence Topology
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32588,7 +32588,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of sequence data based on experimental method
     title: Sequence Data Modality
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -32626,7 +32626,7 @@ enums:
     description: Major DNA/RNA sequencing platforms and instruments used in genomics
       research
     title: Sequencing Platforms and Instruments
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33051,7 +33051,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Fundamental chemical methods used for DNA/RNA sequencing
     title: Sequencing Chemistry Methods
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33106,7 +33106,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods for preparing sequencing libraries from nucleic acid samples
     title: Library Preparation Methods
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33176,7 +33176,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Primary applications or assays using DNA/RNA sequencing
     title: Sequencing Applications
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33259,7 +33259,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Configuration of sequencing reads generated by different platforms
     title: Sequencing Read Types
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33292,7 +33292,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard file formats used for storing sequence data
     title: Sequence File Formats
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -33475,7 +33475,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Levels of processing applied to raw sequencing data
     title: Sequence Data Processing Levels
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -43975,7 +43975,7 @@ enums:
       16607972. Designed for cohort aggregation across federated data resources. Each
       diagnosis maps to a single dominant category.
     title: Pediatric Oncology Diagnosis Category
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/diagnosis_categories
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/diagnosis_categories
     see_also:
     - https://github.com/CBIIT/ccdi-federation-api/discussions/160
     - https://docs.stjude.cloud/cc4k
@@ -44395,7 +44395,7 @@ enums:
       of Childhood Cancer, Third Edition. Based on tumor morphology and primary site
       with emphasis on morphology.
     title: ICCC-3 Main Diagnostic Group
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/iccc3
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/iccc3
     see_also:
     - https://seer.cancer.gov/iccc/
     - https://seer.cancer.gov/iccc/iccc3.html
@@ -44587,7 +44587,7 @@ enums:
       Childhood Cancer, Third Edition. These provide more detailed classification
       within each of the 12 main groups.
     title: ICCC-3 Diagnostic Subgroup
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/iccc3
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/iccc3
     see_also:
     - https://seer.cancer.gov/iccc/iccc3.html
     - https://seer.cancer.gov/iccc/iccc3_ext.html
@@ -45151,7 +45151,7 @@ enums:
       effective for diagnosis years 2024+. Allows staging before any treatment, unlike
       the surgical INSS system.
     title: INRGSS Stage
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/staging/neuroblastoma
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/staging/neuroblastoma
     see_also:
     - https://staging.seer.cancer.gov/pediatric/input/1.0/neuroblastoma/inrgss/
     - https://pmc.ncbi.nlm.nih.gov/articles/PMC2650389/
@@ -45241,7 +45241,7 @@ enums:
       metastatic spread. This is the legacy system; INRGSS is now preferred for diagnosis
       years 2024+.
     title: INSS Stage
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/staging/neuroblastoma
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/staging/neuroblastoma
     see_also:
     - https://www.ncbi.nlm.nih.gov/books/NBK65747.5/table/CDR0000062786__725/
     - https://www.cancer.org/cancer/types/neuroblastoma/detection-diagnosis-staging/staging.html
@@ -45357,7 +45357,7 @@ enums:
       groups. Combines INRGSS stage with tumor histology, MYCN status, ploidy, and
       other prognostic factors.
     title: Neuroblastoma Risk Group
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/staging/neuroblastoma
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/staging/neuroblastoma
     see_also:
     - https://pmc.ncbi.nlm.nih.gov/articles/PMC2650388/
     contributors:
@@ -45418,7 +45418,7 @@ enums:
     description: Image-defined risk factors (IDRFs) used in INRGSS staging to determine
       surgical risk. Presence of any IDRF upgrades a tumor from L1 to L2.
     title: Image-Defined Risk Factor
-    from_schema: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/staging/neuroblastoma
+    from_schema: https://w3id.org/valuesets/medical/pediatric_oncology/staging/neuroblastoma
     see_also:
     - https://pmc.ncbi.nlm.nih.gov/articles/PMC2650389/
     contributors:
@@ -45518,7 +45518,7 @@ enums:
 
       Respondents may select multiple races.'
     title: Race OMB1997
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45620,7 +45620,7 @@ enums:
     description: Ethnicity categories following OMB 1997 standards used by NIH and
       federal agencies
     title: Ethnicity OMB1997
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45673,7 +45673,7 @@ enums:
 
       Required by NIH as a biological variable in research.'
     title: Biological Sex
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45722,7 +45722,7 @@ enums:
     description: Standard age groups used in NIH clinical research, particularly NINDS
       CDEs
     title: Age Group
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45830,7 +45830,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Vital status of a research participant in clinical studies
     title: Participant Vital Status
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45860,7 +45860,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Clinical trial or study recruitment status per NIH/ClinicalTrials.gov
     title: Recruitment Status
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45912,7 +45912,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Clinical trial phases per FDA and NIH definitions
     title: Study Phase
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -45995,7 +45995,7 @@ enums:
         value: https://ga4gh.org
     description: Karyotypic sex of an individual based on chromosome composition
     title: Karyotypic Sex
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46137,7 +46137,7 @@ enums:
 
       FHIR mapping: AdministrativeGender'
     title: Phenotypic Sex
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46183,7 +46183,7 @@ enums:
         value: https://ga4gh.org
     description: Allelic state/zygosity of a variant or genetic feature
     title: Allelic State
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46256,7 +46256,7 @@ enums:
         value: https://ga4gh.org
     description: Laterality/sidedness of a finding or anatomical structure
     title: Laterality
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46315,7 +46315,7 @@ enums:
         value: https://ga4gh.org
     description: Timing of disease or phenotype onset relative to developmental stages
     title: Onset Timing
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46423,7 +46423,7 @@ enums:
         value: https://ga4gh.org
     description: ACMG/AMP variant pathogenicity classification for clinical genetics
     title: ACMG Pathogenicity
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46503,7 +46503,7 @@ enums:
         value: https://ga4gh.org
     description: Clinical actionability of a genetic finding for treatment decisions
     title: Therapeutic Actionability
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46546,7 +46546,7 @@ enums:
         value: https://ga4gh.org
     description: Progress status of clinical interpretation or diagnosis
     title: Interpretation Progress
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46603,7 +46603,7 @@ enums:
         value: https://ga4gh.org
     description: Status of a therapeutic regimen or treatment protocol
     title: Regimen Status
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46671,7 +46671,7 @@ enums:
         value: https://ga4gh.org
     description: Response categories for drug treatment outcomes
     title: Drug Response
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46733,7 +46733,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Scale of bioprocessing operations from lab bench to commercial production
     title: Process Scale
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46815,7 +46815,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of bioreactors used in fermentation and cell culture
     title: Bioreactor Type
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -46927,7 +46927,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Modes of fermentation operation
     title: Fermentation Mode
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47007,7 +47007,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Oxygen supply strategies for fermentation
     title: Oxygenation Strategy
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47064,7 +47064,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of agitation/mixing in bioreactors
     title: Agitation Type
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47154,7 +47154,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Downstream processing unit operations
     title: Downstream Process
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47244,7 +47244,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of feedstocks for bioprocessing
     title: Feedstock Type
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47353,7 +47353,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of products from bioprocessing
     title: Product Type
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -47452,7 +47452,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Methods for sterilization in bioprocessing
     title: Sterilization Method
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -51665,7 +51665,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Legal entity types for business organizations
     title: Legal Entity Type
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52007,7 +52007,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of organizational hierarchy and reporting structures
     title: Organizational Structure
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52201,7 +52201,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Hierarchical levels within organizational management structure
     title: Management Level
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52401,7 +52401,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Roles within corporate governance structure
     title: Corporate Governance Role
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52601,7 +52601,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of business ownership structures
     title: Business Ownership Type
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52750,7 +52750,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Size classifications for business entities
     title: Business Size Classification
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -52865,7 +52865,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Stages in business development lifecycle
     title: Business Lifecycle Stage
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53015,7 +53015,7 @@ enums:
     description: NAICS two-digit sector codes (North American Industry Classification
       System)
     title: NAICS Sector
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53309,7 +53309,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Broad economic sector classifications
     title: Economic Sector
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53407,7 +53407,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of primary business activities
     title: Business Activity Type
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53590,7 +53590,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Industry lifecycle and maturity stages
     title: Industry Maturity
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53703,7 +53703,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Competitive structure of industry markets
     title: Market Structure
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53816,7 +53816,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Level of government regulation in different industries
     title: Industry Regulation Level
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -53929,7 +53929,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Management approaches and methodologies
     title: Management Methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -54112,7 +54112,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Strategic planning and analysis frameworks
     title: Strategic Framework
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -54296,7 +54296,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Business operational models and approaches
     title: Operational Model
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -54479,7 +54479,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Performance measurement systems and approaches
     title: Performance Measurement
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -54662,7 +54662,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Decision-making approaches and styles
     title: Decision Making Style
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -54845,7 +54845,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Leadership approaches and styles
     title: Leadership Style
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55028,7 +55028,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of business processes
     title: Business Process Type
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55177,7 +55177,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Quality management standards and frameworks
     title: Quality Standard
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55430,7 +55430,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Quality improvement methodologies and approaches
     title: Quality Methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55643,7 +55643,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Quality control techniques and tools
     title: Quality Control Technique
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55856,7 +55856,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Levels of quality assurance implementation
     title: Quality Assurance Level
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -55969,7 +55969,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Process improvement methodologies and approaches
     title: Process Improvement Approach
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -56142,7 +56142,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Organizational quality maturity levels
     title: Quality Maturity Level
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -56255,7 +56255,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of procurement activities and approaches
     title: Procurement Type
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -56468,7 +56468,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Vendor classification categories
     title: Vendor Category
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -56681,7 +56681,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Supply chain strategic approaches
     title: Supply Chain Strategy
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -56894,7 +56894,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of logistics operations
     title: Logistics Operation
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -57107,7 +57107,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sourcing strategy approaches
     title: Sourcing Strategy
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -57320,7 +57320,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of supplier relationship management
     title: Supplier Relationship Type
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -57533,7 +57533,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Inventory management methodologies
     title: Inventory Management Approach
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -57746,7 +57746,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of employment arrangements and contracts
     title: Employment Type
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -57939,7 +57939,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Organizational job levels and career progression
     title: Job Level
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58132,7 +58132,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Human resources functional areas and specializations
     title: HR Function
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58325,7 +58325,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of employee compensation structures
     title: Compensation Type
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58498,7 +58498,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Employee performance evaluation ratings
     title: Performance Rating
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58611,7 +58611,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sources for candidate recruitment and sourcing
     title: Recruitment Source
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58784,7 +58784,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of employee training and development programs
     title: Training Type
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -58957,7 +58957,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Current employment status classifications
     title: Employee Status
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59090,7 +59090,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Work location and arrangement types
     title: Work Arrangement
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59203,7 +59203,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Categories of employee benefits and compensation
     title: Benefits Category
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59663,7 +59663,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of automated laboratory devices and equipment
     title: Laboratory Device Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/devices
+    from_schema: https://w3id.org/valuesets/lab_automation/devices
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59775,7 +59775,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of robotic arms used in laboratory automation systems
     title: Robotic Arm Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/devices
+    from_schema: https://w3id.org/valuesets/lab_automation/devices
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59819,7 +59819,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Operations for automated liquid handling in laboratory automation
     title: Liquid Handling Operation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/operations
+    from_schema: https://w3id.org/valuesets/lab_automation/operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59890,7 +59890,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: General sample processing operations in automated laboratories
     title: Sample Processing Operation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/operations
+    from_schema: https://w3id.org/valuesets/lab_automation/operations
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -59959,7 +59959,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standard microplate well configurations following ANSI/SLAS standards
     title: Microplate Format
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60023,7 +60023,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of laboratory containers and labware
     title: Container Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60092,7 +60092,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Material composition of laboratory microplates
     title: Plate Material
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60119,7 +60119,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Surface treatment of microplates
     title: Plate Coating
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60152,7 +60152,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of workflow orchestration in laboratory automation systems
     title: Workflow Orchestration Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60188,7 +60188,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of scheduling algorithms for laboratory automation
     title: Scheduler Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60226,7 +60226,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Execution states of laboratory protocols
     title: Protocol State
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60271,7 +60271,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Modes of protocol execution
     title: Execution Mode
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60308,7 +60308,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Error handling strategies in laboratory automation workflows
     title: Workflow Error Handling
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60345,7 +60345,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of systems integrated with laboratory automation platforms
     title: Integration System
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60398,7 +60398,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Industry standards for laboratory automation systems
     title: Automation Standard
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60488,7 +60488,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Communication protocols for laboratory automation integration
     title: Communication Protocol
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60545,7 +60545,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Standardization specifications for laboratory labware
     title: Labware Standard
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60619,7 +60619,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Integration features for laboratory automation systems
     title: Integration Feature
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60664,7 +60664,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of thermal cycling instruments
     title: Thermal Cycler Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60719,7 +60719,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of PCR operations and techniques
     title: PCR Operation Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60788,7 +60788,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Detection modes for real-time PCR instruments
     title: Detection Mode
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60833,7 +60833,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Types of plates used for PCR applications
     title: PCR Plate Type
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60874,7 +60874,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Steps in thermal cycling protocols
     title: Thermal Cycling Step
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -60920,7 +60920,7 @@ enums:
     description: arXiv subject categories for classifying preprints and publications.
       Categories are organized by major subject groups.
     title: arXiv Category
-    from_schema: https://w3id.org/linkml/valuesets/publishing/arxiv_categories
+    from_schema: https://w3id.org/valuesets/publishing/arxiv_categories
     contributors:
     - orcid:0000-0002-6601-2165
     - https://github.com/anthropics/claude-code
@@ -61937,7 +61937,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Workflow status codes for OSTI record revisions.
     title: OSTI Workflow Status
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -61966,7 +61966,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Access and distribution limitation codes from OSTI.
     title: OSTI Access Limitation
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62015,7 +62015,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Collection type codes used by OSTI for record origin.
     title: OSTI Collection Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62036,7 +62036,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Sensitivity flags calculated by OSTI for released records.
     title: OSTI Sensitivity Flag
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62059,7 +62059,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Identifier types for OSTI organizations.
     title: OSTI Organization Identifier Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62080,7 +62080,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Product type codes from OSTI record metadata.
     title: OSTI Product Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62123,7 +62123,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Organization role types used by OSTI.
     title: OSTI Organization Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62146,7 +62146,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Person role types used by OSTI.
     title: OSTI Person Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62177,7 +62177,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Contributor role types used by OSTI.
     title: OSTI Contributor Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62238,7 +62238,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Identifier types for related resources in OSTI.
     title: OSTI Related Identifier Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62299,7 +62299,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Relationship types between records in OSTI.
     title: OSTI Relation Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62410,7 +62410,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Identifier type codes from OSTI record metadata.
     title: OSTI Identifier Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62475,7 +62475,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Geolocation shape types in OSTI record metadata.
     title: OSTI Geolocation Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -62496,7 +62496,7 @@ enums:
     - valuesets_meta:ValueSetEnumDefinition
     description: Location indicators for OSTI media files and sets.
     title: OSTI Media Location Type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     see_also:
     - https://www.osti.gov/elink2api/record-schema
     contributors:
@@ -65289,7 +65289,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/go_evidence
     description: Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology
       (ECO) terms
-    from_schema: https://w3id.org/linkml/valuesets/bio/go_evidence
+    from_schema: https://w3id.org/valuesets/bio/go_evidence
     slot_uri: valuesets:go_evidence
     range: GOEvidenceCode
   go_electronic_methods:
@@ -65297,14 +65297,14 @@ slots:
     definition_uri: https://w3id.org/valuesets/go_electronic_methods
     description: Electronic annotation methods used in Gene Ontology, identified by
       GO_REF codes
-    from_schema: https://w3id.org/linkml/valuesets/bio/go_evidence
+    from_schema: https://w3id.org/valuesets/bio/go_evidence
     slot_uri: valuesets:go_electronic_methods
     range: GOElectronicMethods
   organism_taxon:
     name: organism_taxon
     definition_uri: https://w3id.org/valuesets/organism_taxon
     description: The organism taxon classification
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     slot_uri: valuesets:organism_taxon
     range: OrganismTaxonEnum
   common_organism_taxa:
@@ -65312,77 +65312,77 @@ slots:
     definition_uri: https://w3id.org/valuesets/common_organism_taxa
     description: Common model organisms used in biological research, mapped to NCBI
       Taxonomy IDs
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     slot_uri: valuesets:common_organism_taxa
     range: CommonOrganismTaxaEnum
   taxonomic_rank:
     name: taxonomic_rank
     definition_uri: https://w3id.org/valuesets/taxonomic_rank
     description: Standard taxonomic ranks used in biological classification
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     slot_uri: valuesets:taxonomic_rank
     range: TaxonomicRank
   biological_kingdom:
     name: biological_kingdom
     definition_uri: https://w3id.org/valuesets/biological_kingdom
     description: Major kingdoms/domains of life
-    from_schema: https://w3id.org/linkml/valuesets/bio/taxonomy
+    from_schema: https://w3id.org/valuesets/bio/taxonomy
     slot_uri: valuesets:biological_kingdom
     range: BiologicalKingdom
   cell_cycle_phase:
     name: cell_cycle_phase
     definition_uri: https://w3id.org/valuesets/cell_cycle_phase
     description: Major phases of the eukaryotic cell cycle
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:cell_cycle_phase
     range: CellCyclePhase
   mitotic_phase:
     name: mitotic_phase
     definition_uri: https://w3id.org/valuesets/mitotic_phase
     description: Stages of mitosis (M phase)
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:mitotic_phase
     range: MitoticPhase
   cell_cycle_checkpoint:
     name: cell_cycle_checkpoint
     definition_uri: https://w3id.org/valuesets/cell_cycle_checkpoint
     description: Cell cycle checkpoints that regulate progression
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:cell_cycle_checkpoint
     range: CellCycleCheckpoint
   meiotic_phase:
     name: meiotic_phase
     definition_uri: https://w3id.org/valuesets/meiotic_phase
     description: Phases specific to meiotic cell division
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:meiotic_phase
     range: MeioticPhase
   cell_cycle_regulator:
     name: cell_cycle_regulator
     definition_uri: https://w3id.org/valuesets/cell_cycle_regulator
     description: Types of cell cycle regulatory molecules
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:cell_cycle_regulator
     range: CellCycleRegulator
   cell_proliferation_state:
     name: cell_proliferation_state
     definition_uri: https://w3id.org/valuesets/cell_proliferation_state
     description: Cell proliferation and growth states
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:cell_proliferation_state
     range: CellProliferationState
   dna_damage_response:
     name: dna_damage_response
     definition_uri: https://w3id.org/valuesets/dna_damage_response
     description: DNA damage response pathways during cell cycle
-    from_schema: https://w3id.org/linkml/valuesets/bio/cell_cycle
+    from_schema: https://w3id.org/valuesets/bio/cell_cycle
     slot_uri: valuesets:dna_damage_response
     range: DNADamageResponse
   genome_feature:
     name: genome_feature
     definition_uri: https://w3id.org/valuesets/genome_feature
     description: Genome feature types from SOFA (Sequence Ontology Feature Annotation)
-    from_schema: https://w3id.org/linkml/valuesets/bio/genome_features
+    from_schema: https://w3id.org/valuesets/bio/genome_features
     slot_uri: valuesets:genome_feature
     range: GenomeFeatureType
     multivalued: true
@@ -65391,21 +65391,21 @@ slots:
     definition_uri: https://w3id.org/valuesets/metazoan_anatomical_structure
     description: Any anatomical structure found in metazoan organisms, including organs,
       tissues, and body parts
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:metazoan_anatomical_structure
     range: MetazoanAnatomicalStructure
   human_anatomical_structure:
     name: human_anatomical_structure
     definition_uri: https://w3id.org/valuesets/human_anatomical_structure
     description: Anatomical structures specific to humans (Homo sapiens)
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:human_anatomical_structure
     range: HumanAnatomicalStructure
   plant_anatomical_structure:
     name: plant_anatomical_structure
     definition_uri: https://w3id.org/valuesets/plant_anatomical_structure
     description: Any anatomical structure found in plant organisms
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:plant_anatomical_structure
     range: PlantAnatomicalStructure
   cell:
@@ -65413,133 +65413,133 @@ slots:
     definition_uri: https://w3id.org/valuesets/cell
     description: Any cell type from the Cell Ontology (CL), including native and experimentally
       modified cells
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:cell
     range: CellType
   neuron:
     name: neuron
     definition_uri: https://w3id.org/valuesets/neuron
     description: Neuron cell types from the Cell Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:neuron
     range: NeuronType
   immune_cell:
     name: immune_cell
     definition_uri: https://w3id.org/valuesets/immune_cell
     description: Immune system cell types (leukocytes and their subtypes)
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:immune_cell
     range: ImmuneCell
   stem_cell:
     name: stem_cell
     definition_uri: https://w3id.org/valuesets/stem_cell
     description: Stem cell types and progenitor cells
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:stem_cell
     range: StemCell
   disease:
     name: disease
     definition_uri: https://w3id.org/valuesets/disease
     description: Human diseases from the Mondo Disease Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:disease
     range: Disease
   infectious_disease:
     name: infectious_disease
     definition_uri: https://w3id.org/valuesets/infectious_disease
     description: Infectious diseases caused by pathogenic organisms
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:infectious_disease
     range: InfectiousDisease
   cancer:
     name: cancer
     definition_uri: https://w3id.org/valuesets/cancer
     description: Neoplastic and cancerous diseases
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:cancer
     range: Cancer
   genetic_disease:
     name: genetic_disease
     definition_uri: https://w3id.org/valuesets/genetic_disease
     description: Hereditary and genetic diseases
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:genetic_disease
     range: GeneticDisease
   chemical_entity:
     name: chemical_entity
     definition_uri: https://w3id.org/valuesets/chemical_entity
     description: Any chemical entity from ChEBI ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:chemical_entity
     range: ChemicalEntity
   drug:
     name: drug
     definition_uri: https://w3id.org/valuesets/drug
     description: Pharmaceutical drugs and medications
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:drug
     range: Drug
   metabolite:
     name: metabolite
     definition_uri: https://w3id.org/valuesets/metabolite
     description: Metabolites and metabolic intermediates
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:metabolite
     range: Metabolite
   protein:
     name: protein
     definition_uri: https://w3id.org/valuesets/protein
     description: Proteins and protein complexes
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:protein
     range: Protein
   phenotype:
     name: phenotype
     definition_uri: https://w3id.org/valuesets/phenotype
     description: Phenotypic abnormalities from Human Phenotype Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:phenotype
     range: Phenotype
   clinical_finding:
     name: clinical_finding
     definition_uri: https://w3id.org/valuesets/clinical_finding
     description: Clinical findings and observations
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:clinical_finding
     range: ClinicalFinding
   biological_process:
     name: biological_process
     definition_uri: https://w3id.org/valuesets/biological_process
     description: Biological processes from Gene Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:biological_process
     range: BiologicalProcess
   metabolic_process:
     name: metabolic_process
     definition_uri: https://w3id.org/valuesets/metabolic_process
     description: Metabolic processes and pathways
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:metabolic_process
     range: MetabolicProcess
   molecular_function:
     name: molecular_function
     definition_uri: https://w3id.org/valuesets/molecular_function
     description: Molecular functions from Gene Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:molecular_function
     range: MolecularFunction
   cellular_component:
     name: cellular_component
     definition_uri: https://w3id.org/valuesets/cellular_component
     description: Cellular components and locations from Gene Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:cellular_component
     range: CellularComponent
   sequence_feature:
     name: sequence_feature
     definition_uri: https://w3id.org/valuesets/sequence_feature
     description: Sequence features from the Sequence Ontology
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:sequence_feature
     range: SequenceFeature
     multivalued: true
@@ -65547,7 +65547,7 @@ slots:
     name: gene_feature
     definition_uri: https://w3id.org/valuesets/gene_feature
     description: Gene-related sequence features
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:gene_feature
     range: GeneFeature
     multivalued: true
@@ -65555,28 +65555,28 @@ slots:
     name: environment
     definition_uri: https://w3id.org/valuesets/environment
     description: Environmental systems and biomes
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:environment
     range: Environment
   environmental_material:
     name: environmental_material
     definition_uri: https://w3id.org/valuesets/environmental_material
     description: Environmental materials and substances
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:environmental_material
     range: EnvironmentalMaterial
   quality:
     name: quality
     definition_uri: https://w3id.org/valuesets/quality
     description: Phenotypic qualities and attributes from PATO
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:quality
     range: Quality
   physical_quality:
     name: physical_quality
     definition_uri: https://w3id.org/valuesets/physical_quality
     description: Physical qualities like size, shape, color
-    from_schema: https://w3id.org/linkml/valuesets/bio/bio_entities
+    from_schema: https://w3id.org/valuesets/bio/bio_entities
     slot_uri: valuesets:physical_quality
     range: PhysicalQuality
   sample:
@@ -65689,7 +65689,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/biosafety_level
     description: The biosafety level required for handling biological agents based
       on potential risk
-    from_schema: https://w3id.org/linkml/valuesets/bio/biosafety
+    from_schema: https://w3id.org/valuesets/bio/biosafety
     slot_uri: valuesets:biosafety_level
     range: BiosafetyLevelEnum
   insdc_missing_value:
@@ -65697,7 +65697,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/insdc_missing_value
     description: INSDC (International Nucleotide Sequence Database Collaboration)
       controlled vocabulary for missing values in sequence records
-    from_schema: https://w3id.org/linkml/valuesets/bio/insdc_missing_values
+    from_schema: https://w3id.org/valuesets/bio/insdc_missing_values
     slot_uri: valuesets:insdc_missing_value
     range: InsdcMissingValueEnum
   insdc_geographic_location:
@@ -65705,35 +65705,35 @@ slots:
     definition_uri: https://w3id.org/valuesets/insdc_geographic_location
     description: INSDC controlled vocabulary for geographic locations of collected
       samples
-    from_schema: https://w3id.org/linkml/valuesets/bio/insdc_geographic_locations
+    from_schema: https://w3id.org/valuesets/bio/insdc_geographic_locations
     slot_uri: valuesets:insdc_geographic_location
     range: InsdcGeographicLocationEnum
   viral_genome_type:
     name: viral_genome_type
     definition_uri: https://w3id.org/valuesets/viral_genome_type
     description: Types of viral genomes based on Baltimore classification
-    from_schema: https://w3id.org/linkml/valuesets/bio/viral_genome_types
+    from_schema: https://w3id.org/valuesets/bio/viral_genome_types
     slot_uri: valuesets:viral_genome_type
     range: ViralGenomeTypeEnum
   plant_sex:
     name: plant_sex
     definition_uri: https://w3id.org/valuesets/plant_sex
     description: Plant reproductive and sexual system types
-    from_schema: https://w3id.org/linkml/valuesets/bio/plant_sex
+    from_schema: https://w3id.org/valuesets/bio/plant_sex
     slot_uri: valuesets:plant_sex
     range: PlantSexEnum
   rel_to_oxygen:
     name: rel_to_oxygen
     definition_uri: https://w3id.org/valuesets/rel_to_oxygen
     description: Organism's relationship to oxygen for growth and survival
-    from_schema: https://w3id.org/linkml/valuesets/bio/relationship_to_oxygen
+    from_schema: https://w3id.org/valuesets/bio/relationship_to_oxygen
     slot_uri: valuesets:rel_to_oxygen
     range: RelToOxygenEnum
   trophic_level:
     name: trophic_level
     definition_uri: https://w3id.org/valuesets/trophic_level
     description: Trophic levels are the feeding position in a food chain
-    from_schema: https://w3id.org/linkml/valuesets/bio/trophic_levels
+    from_schema: https://w3id.org/valuesets/bio/trophic_levels
     slot_uri: valuesets:trophic_level
     range: TrophicLevelEnum
   human_developmental_stage:
@@ -65768,644 +65768,644 @@ slots:
     name: day_of_week
     definition_uri: https://w3id.org/valuesets/day_of_week
     description: Days of the week following ISO 8601 standard (Monday = 1)
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:day_of_week
     range: DayOfWeek
   month:
     name: month
     definition_uri: https://w3id.org/valuesets/month
     description: Months of the year
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:month
     range: Month
   quarter:
     name: quarter
     definition_uri: https://w3id.org/valuesets/quarter
     description: Calendar quarters
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:quarter
     range: Quarter
   season:
     name: season
     definition_uri: https://w3id.org/valuesets/season
     description: Seasons of the year (Northern Hemisphere)
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:season
     range: Season
   time_period:
     name: time_period
     definition_uri: https://w3id.org/valuesets/time_period
     description: Common time periods and intervals
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:time_period
     range: TimePeriod
   time_of_day:
     name: time_of_day
     definition_uri: https://w3id.org/valuesets/time_of_day
     description: Common times of day
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:time_of_day
     range: TimeOfDay
   business_time_frame:
     name: business_time_frame
     definition_uri: https://w3id.org/valuesets/business_time_frame
     description: Common business and financial time frames
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:business_time_frame
     range: BusinessTimeFrame
   geological_era:
     name: geological_era
     definition_uri: https://w3id.org/valuesets/geological_era
     description: Major geological eras
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:geological_era
     range: GeologicalEra
   historical_period:
     name: historical_period
     definition_uri: https://w3id.org/valuesets/historical_period
     description: Major historical periods
-    from_schema: https://w3id.org/linkml/valuesets/time/temporal
+    from_schema: https://w3id.org/valuesets/time/temporal
     slot_uri: valuesets:historical_period
     range: HistoricalPeriod
   publication:
     name: publication
     definition_uri: https://w3id.org/valuesets/publication
     description: Types of academic and research publications
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:publication
     range: PublicationType
   peer_review_status:
     name: peer_review_status
     definition_uri: https://w3id.org/valuesets/peer_review_status
     description: Status of peer review process
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:peer_review_status
     range: PeerReviewStatus
   academic_degree:
     name: academic_degree
     definition_uri: https://w3id.org/valuesets/academic_degree
     description: Academic degrees and qualifications
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:academic_degree
     range: AcademicDegree
   license:
     name: license
     definition_uri: https://w3id.org/valuesets/license
     description: Common software and content licenses
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:license
     range: LicenseType
   research_field:
     name: research_field
     definition_uri: https://w3id.org/valuesets/research_field
     description: Major research fields and disciplines
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:research_field
     range: ResearchField
   funding:
     name: funding
     definition_uri: https://w3id.org/valuesets/funding
     description: Types of research funding
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:funding
     range: FundingType
   manuscript_section:
     name: manuscript_section
     definition_uri: https://w3id.org/valuesets/manuscript_section
     description: Sections of a scientific manuscript or publication
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:manuscript_section
     range: ManuscriptSection
   research_role:
     name: research_role
     definition_uri: https://w3id.org/valuesets/research_role
     description: Roles in research and authorship
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:research_role
     range: ResearchRole
   open_access:
     name: open_access
     definition_uri: https://w3id.org/valuesets/open_access
     description: Types of open access publishing
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:open_access
     range: OpenAccessType
   citation_style:
     name: citation_style
     definition_uri: https://w3id.org/valuesets/citation_style
     description: Common citation and reference styles
-    from_schema: https://w3id.org/linkml/valuesets/academic/research
+    from_schema: https://w3id.org/valuesets/academic/research
     slot_uri: valuesets:citation_style
     range: CitationStyle
   us_national_laboratory:
     name: us_national_laboratory
     definition_uri: https://w3id.org/valuesets/us_national_laboratory
     description: US Department of Energy National Laboratory
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     slot_uri: valuesets:us_national_laboratory
     range: USDOENationalLaboratoryEnum
   us_federal_funding_agency:
     name: us_federal_funding_agency
     definition_uri: https://w3id.org/valuesets/us_federal_funding_agency
     description: US Federal Research Funding Agency
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     slot_uri: valuesets:us_federal_funding_agency
     range: USFederalFundingAgencyEnum
   nih_institute_center:
     name: nih_institute_center
     definition_uri: https://w3id.org/valuesets/nih_institute_center
     description: NIH Institute or Center
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     slot_uri: valuesets:nih_institute_center
     range: NIHInstituteCenterEnum
   standards_organization:
     name: standards_organization
     definition_uri: https://w3id.org/valuesets/standards_organization
     description: Standards Development Organization
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     slot_uri: valuesets:standards_organization
     range: StandardsOrganizationEnum
   un_specialized_agency:
     name: un_specialized_agency
     definition_uri: https://w3id.org/valuesets/un_specialized_agency
     description: United Nations Specialized Agency
-    from_schema: https://w3id.org/linkml/valuesets/academic/organizations
+    from_schema: https://w3id.org/valuesets/academic/organizations
     slot_uri: valuesets:un_specialized_agency
     range: UNSpecializedAgencyEnum
   energy_source:
     name: energy_source
     definition_uri: https://w3id.org/valuesets/energy_source
     description: Types of energy sources and generation methods
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:energy_source
     range: EnergySource
   energy_unit:
     name: energy_unit
     definition_uri: https://w3id.org/valuesets/energy_unit
     description: Units for measuring energy
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:energy_unit
     range: EnergyUnit
   power_unit:
     name: power_unit
     definition_uri: https://w3id.org/valuesets/power_unit
     description: Units for measuring power (energy per time)
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:power_unit
     range: PowerUnit
   energy_efficiency_rating:
     name: energy_efficiency_rating
     definition_uri: https://w3id.org/valuesets/energy_efficiency_rating
     description: Energy efficiency ratings and standards
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:energy_efficiency_rating
     range: EnergyEfficiencyRating
   building_energy_standard:
     name: building_energy_standard
     definition_uri: https://w3id.org/valuesets/building_energy_standard
     description: Building energy efficiency standards and certifications
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:building_energy_standard
     range: BuildingEnergyStandard
   grid:
     name: grid
     definition_uri: https://w3id.org/valuesets/grid
     description: Types of electrical grid systems
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:grid
     range: GridType
   energy_storage:
     name: energy_storage
     definition_uri: https://w3id.org/valuesets/energy_storage
     description: Types of energy storage systems
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:energy_storage
     range: EnergyStorageType
   battery_type:
     name: battery_type
     definition_uri: https://w3id.org/valuesets/battery_type
     description: Types of battery technologies
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:battery_type
     range: BatteryType
   pv_cell_type:
     name: pv_cell_type
     definition_uri: https://w3id.org/valuesets/pv_cell_type
     description: Types of photovoltaic cell technologies
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:pv_cell_type
     range: PVCellType
   pv_system_type:
     name: pv_system_type
     definition_uri: https://w3id.org/valuesets/pv_system_type
     description: Types of photovoltaic system installations
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:pv_system_type
     range: PVSystemType
   emission_scope:
     name: emission_scope
     definition_uri: https://w3id.org/valuesets/emission_scope
     description: Greenhouse gas emission scopes (GHG Protocol)
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:emission_scope
     range: EmissionScope
   carbon_intensity:
     name: carbon_intensity
     definition_uri: https://w3id.org/valuesets/carbon_intensity
     description: Carbon intensity levels for energy sources
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:carbon_intensity
     range: CarbonIntensity
   electricity_market:
     name: electricity_market
     definition_uri: https://w3id.org/valuesets/electricity_market
     description: Types of electricity markets and pricing
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:electricity_market
     range: ElectricityMarket
   capability_status:
     name: capability_status
     definition_uri: https://w3id.org/valuesets/capability_status
     description: Operational status of a capability or facility
-    from_schema: https://w3id.org/linkml/valuesets/energy/energy
+    from_schema: https://w3id.org/valuesets/energy/energy
     slot_uri: valuesets:capability_status
     range: CapabilityStatus
   fossil_fuel_type:
     name: fossil_fuel_type
     definition_uri: https://w3id.org/valuesets/fossil_fuel_type
     description: Types of fossil fuels used for energy generation
-    from_schema: https://w3id.org/linkml/valuesets/energy/fossil_fuels
+    from_schema: https://w3id.org/valuesets/energy/fossil_fuels
     slot_uri: valuesets:fossil_fuel_type
     range: FossilFuelTypeEnum
   reactor_type:
     name: reactor_type
     definition_uri: https://w3id.org/valuesets/reactor_type
     description: Nuclear reactor classification by design type
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_type
     range: ReactorTypeEnum
   reactor_generation:
     name: reactor_generation
     definition_uri: https://w3id.org/valuesets/reactor_generation
     description: Reactor generation classification (I, II, III, III+, IV)
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_generation
     range: ReactorGenerationEnum
   reactor_coolant:
     name: reactor_coolant
     definition_uri: https://w3id.org/valuesets/reactor_coolant
     description: Primary coolant type used in reactor
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_coolant
     range: ReactorCoolantEnum
   reactor_moderator:
     name: reactor_moderator
     definition_uri: https://w3id.org/valuesets/reactor_moderator
     description: Neutron moderator type used in reactor
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_moderator
     range: ReactorModeratorEnum
   reactor_neutron_spectrum:
     name: reactor_neutron_spectrum
     definition_uri: https://w3id.org/valuesets/reactor_neutron_spectrum
     description: Neutron energy spectrum classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_neutron_spectrum
     range: ReactorNeutronSpectrumEnum
   reactor_size_category:
     name: reactor_size_category
     definition_uri: https://w3id.org/valuesets/reactor_size_category
     description: Reactor size classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+    from_schema: https://w3id.org/valuesets/energy/nuclear/reactor_types
     slot_uri: valuesets:reactor_size_category
     range: ReactorSizeCategoryEnum
   nuclear_fuel_type:
     name: nuclear_fuel_type
     definition_uri: https://w3id.org/valuesets/nuclear_fuel_type
     description: Type of nuclear fuel material
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:nuclear_fuel_type
     range: NuclearFuelTypeEnum
   uranium_enrichment_level:
     name: uranium_enrichment_level
     definition_uri: https://w3id.org/valuesets/uranium_enrichment_level
     description: Uranium-235 enrichment classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:uranium_enrichment_level
     range: UraniumEnrichmentLevelEnum
   fuel_form:
     name: fuel_form
     definition_uri: https://w3id.org/valuesets/fuel_form
     description: Physical form of nuclear fuel
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:fuel_form
     range: FuelFormEnum
   fuel_assembly_type:
     name: fuel_assembly_type
     definition_uri: https://w3id.org/valuesets/fuel_assembly_type
     description: Type of fuel assembly configuration
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:fuel_assembly_type
     range: FuelAssemblyTypeEnum
   fuel_cycle_stage:
     name: fuel_cycle_stage
     definition_uri: https://w3id.org/valuesets/fuel_cycle_stage
     description: Stage in the nuclear fuel cycle
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:fuel_cycle_stage
     range: FuelCycleStageEnum
   fissile_material:
     name: fissile_material
     definition_uri: https://w3id.org/valuesets/fissile_material
     description: Fissile isotope used in nuclear fuel
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
     slot_uri: valuesets:fissile_material
     range: FissileIsotopeEnum
   waste_classification:
     name: waste_classification
     definition_uri: https://w3id.org/valuesets/waste_classification
     description: International radioactive waste classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:waste_classification
     range: IAEAWasteClassificationEnum
   nrc_waste_class:
     name: nrc_waste_class
     definition_uri: https://w3id.org/valuesets/nrc_waste_class
     description: US NRC waste classification (10 CFR 61)
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:nrc_waste_class
     range: NRCWasteClassEnum
   waste_heat_generation:
     name: waste_heat_generation
     definition_uri: https://w3id.org/valuesets/waste_heat_generation
     description: Heat generation category of radioactive waste
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:waste_heat_generation
     range: WasteHeatGenerationEnum
   waste_half_life_category:
     name: waste_half_life_category
     definition_uri: https://w3id.org/valuesets/waste_half_life_category
     description: Half-life category for radioactive waste
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:waste_half_life_category
     range: WasteHalfLifeCategoryEnum
   waste_disposal_method:
     name: waste_disposal_method
     definition_uri: https://w3id.org/valuesets/waste_disposal_method
     description: Disposal method for radioactive waste
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:waste_disposal_method
     range: WasteDisposalMethodEnum
   waste_source:
     name: waste_source
     definition_uri: https://w3id.org/valuesets/waste_source
     description: Source of radioactive waste generation
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:waste_source
     range: WasteSourceEnum
   transuranic_category:
     name: transuranic_category
     definition_uri: https://w3id.org/valuesets/transuranic_category
     description: Transuranic waste classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
     slot_uri: valuesets:transuranic_category
     range: TransuranicWasteCategoryEnum
   ines_level:
     name: ines_level
     definition_uri: https://w3id.org/valuesets/ines_level
     description: International Nuclear Event Scale level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:ines_level
     range: INESLevelEnum
   emergency_classification:
     name: emergency_classification
     definition_uri: https://w3id.org/valuesets/emergency_classification
     description: Nuclear emergency action level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:emergency_classification
     range: EmergencyClassificationEnum
   nuclear_security_category:
     name: nuclear_security_category
     definition_uri: https://w3id.org/valuesets/nuclear_security_category
     description: IAEA nuclear material security category
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:nuclear_security_category
     range: NuclearSecurityCategoryEnum
   safety_system_class:
     name: safety_system_class
     definition_uri: https://w3id.org/valuesets/safety_system_class
     description: Nuclear safety system classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:safety_system_class
     range: SafetySystemClassEnum
   reactor_safety_function:
     name: reactor_safety_function
     definition_uri: https://w3id.org/valuesets/reactor_safety_function
     description: Nuclear reactor safety function classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:reactor_safety_function
     range: ReactorSafetyFunctionEnum
   defense_in_depth_level:
     name: defense_in_depth_level
     definition_uri: https://w3id.org/valuesets/defense_in_depth_level
     description: Defense in depth barrier level
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:defense_in_depth_level
     range: DefenseInDepthLevelEnum
   radiation_protection_zone:
     name: radiation_protection_zone
     definition_uri: https://w3id.org/valuesets/radiation_protection_zone
     description: Radiation protection zone classification
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
     slot_uri: valuesets:radiation_protection_zone
     range: RadiationProtectionZoneEnum
   nuclear_facility_type:
     name: nuclear_facility_type
     definition_uri: https://w3id.org/valuesets/nuclear_facility_type
     description: Type of nuclear facility
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:nuclear_facility_type
     range: NuclearFacilityTypeEnum
   power_plant_status:
     name: power_plant_status
     definition_uri: https://w3id.org/valuesets/power_plant_status
     description: Operational status of nuclear power plant
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:power_plant_status
     range: PowerPlantStatusEnum
   research_reactor_type:
     name: research_reactor_type
     definition_uri: https://w3id.org/valuesets/research_reactor_type
     description: Type of research reactor
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:research_reactor_type
     range: ResearchReactorTypeEnum
   fuel_cycle_facility_type:
     name: fuel_cycle_facility_type
     definition_uri: https://w3id.org/valuesets/fuel_cycle_facility_type
     description: Type of nuclear fuel cycle facility
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:fuel_cycle_facility_type
     range: FuelCycleFacilityTypeEnum
   waste_facility_type:
     name: waste_facility_type
     definition_uri: https://w3id.org/valuesets/waste_facility_type
     description: Type of nuclear waste management facility
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:waste_facility_type
     range: WasteFacilityTypeEnum
   nuclear_ship_type:
     name: nuclear_ship_type
     definition_uri: https://w3id.org/valuesets/nuclear_ship_type
     description: Type of nuclear-powered vessel
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
     slot_uri: valuesets:nuclear_ship_type
     range: NuclearShipTypeEnum
   reactor_operating_state:
     name: reactor_operating_state
     definition_uri: https://w3id.org/valuesets/reactor_operating_state
     description: Current operational state of nuclear reactor
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:reactor_operating_state
     range: ReactorOperatingStateEnum
   maintenance_type:
     name: maintenance_type
     definition_uri: https://w3id.org/valuesets/maintenance_type
     description: Type of nuclear facility maintenance activity
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:maintenance_type
     range: MaintenanceTypeEnum
   licensing_stage:
     name: licensing_stage
     definition_uri: https://w3id.org/valuesets/licensing_stage
     description: Nuclear facility licensing stage
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:licensing_stage
     range: LicensingStageEnum
   fuel_cycle_operation:
     name: fuel_cycle_operation
     definition_uri: https://w3id.org/valuesets/fuel_cycle_operation
     description: Nuclear fuel cycle operational activity
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:fuel_cycle_operation
     range: FuelCycleOperationEnum
   reactor_control_mode:
     name: reactor_control_mode
     definition_uri: https://w3id.org/valuesets/reactor_control_mode
     description: Reactor control and safety system mode
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:reactor_control_mode
     range: ReactorControlModeEnum
   operational_procedure:
     name: operational_procedure
     definition_uri: https://w3id.org/valuesets/operational_procedure
     description: Standard nuclear operational procedure
-    from_schema: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+    from_schema: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
     slot_uri: valuesets:operational_procedure
     range: OperationalProcedureEnum
   geothermal_system_type:
     name: geothermal_system_type
     definition_uri: https://w3id.org/valuesets/geothermal_system_type
     description: Type of geothermal system
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     slot_uri: valuesets:geothermal_system_type
     range: GeothermalSystemType
   geothermal_reservoir_type:
     name: geothermal_reservoir_type
     definition_uri: https://w3id.org/valuesets/geothermal_reservoir_type
     description: Type of geothermal reservoir
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     slot_uri: valuesets:geothermal_reservoir_type
     range: GeothermalReservoirType
   geothermal_well_type:
     name: geothermal_well_type
     definition_uri: https://w3id.org/valuesets/geothermal_well_type
     description: Type of geothermal well
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     slot_uri: valuesets:geothermal_well_type
     range: GeothermalWellType
   geothermal_application:
     name: geothermal_application
     definition_uri: https://w3id.org/valuesets/geothermal_application
     description: Application of geothermal energy
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     slot_uri: valuesets:geothermal_application
     range: GeothermalApplication
   geothermal_resource_temperature:
     name: geothermal_resource_temperature
     definition_uri: https://w3id.org/valuesets/geothermal_resource_temperature
     description: Temperature classification of geothermal resources
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+    from_schema: https://w3id.org/valuesets/energy/renewable/geothermal
     slot_uri: valuesets:geothermal_resource_temperature
     range: GeothermalResourceTemperature
   hydrogen_type:
     name: hydrogen_type
     definition_uri: https://w3id.org/valuesets/hydrogen_type
     description: Type of hydrogen classified by production method and carbon intensity
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     slot_uri: valuesets:hydrogen_type
     range: HydrogenType
   hydrogen_production_method:
     name: hydrogen_production_method
     definition_uri: https://w3id.org/valuesets/hydrogen_production_method
     description: Method used to produce hydrogen
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     slot_uri: valuesets:hydrogen_production_method
     range: HydrogenProductionMethod
   hydrogen_storage_method:
     name: hydrogen_storage_method
     definition_uri: https://w3id.org/valuesets/hydrogen_storage_method
     description: Method used to store hydrogen
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     slot_uri: valuesets:hydrogen_storage_method
     range: HydrogenStorageMethod
   hydrogen_application:
     name: hydrogen_application
     definition_uri: https://w3id.org/valuesets/hydrogen_application
     description: Application or end use of hydrogen
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+    from_schema: https://w3id.org/valuesets/energy/renewable/hydrogen
     slot_uri: valuesets:hydrogen_application
     range: HydrogenApplication
   biomass_feedstock_type:
     name: biomass_feedstock_type
     definition_uri: https://w3id.org/valuesets/biomass_feedstock_type
     description: Type of biomass feedstock for bioenergy production
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     slot_uri: valuesets:biomass_feedstock_type
     range: BiomassFeedstockType
   biofuel_type:
     name: biofuel_type
     definition_uri: https://w3id.org/valuesets/biofuel_type
     description: Type of biofuel product
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     slot_uri: valuesets:biofuel_type
     range: BiofuelType
   biofuel_generation:
     name: biofuel_generation
     definition_uri: https://w3id.org/valuesets/biofuel_generation
     description: Generation classification of biofuel
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     slot_uri: valuesets:biofuel_generation
     range: BiofuelGeneration
   bioconversion_process:
     name: bioconversion_process
     definition_uri: https://w3id.org/valuesets/bioconversion_process
     description: Process for converting biomass to biofuel
-    from_schema: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+    from_schema: https://w3id.org/valuesets/energy/renewable/bioenergy
     slot_uri: valuesets:bioconversion_process
     range: BioconversionProcess
   mining:
     name: mining
     definition_uri: https://w3id.org/valuesets/mining
     description: Types of mining operations
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:mining
     range: MiningType
   mineral_category:
     name: mineral_category
     definition_uri: https://w3id.org/valuesets/mineral_category
     description: Categories of minerals and materials
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:mineral_category
     range: MineralCategory
   critical_mineral:
@@ -66413,91 +66413,91 @@ slots:
     definition_uri: https://w3id.org/valuesets/critical_mineral
     description: Critical minerals essential for economic and national security, particularly
       for clean energy, defense, and technology applications
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:critical_mineral
     range: CriticalMineral
   common_mineral:
     name: common_mineral
     definition_uri: https://w3id.org/valuesets/common_mineral
     description: Common minerals extracted through mining
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:common_mineral
     range: CommonMineral
   mining_equipment:
     name: mining_equipment
     definition_uri: https://w3id.org/valuesets/mining_equipment
     description: Types of mining equipment
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:mining_equipment
     range: MiningEquipment
   ore_grade:
     name: ore_grade
     definition_uri: https://w3id.org/valuesets/ore_grade
     description: Classification of ore grades
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:ore_grade
     range: OreGrade
   mining_phase:
     name: mining_phase
     definition_uri: https://w3id.org/valuesets/mining_phase
     description: Phases of mining operations
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:mining_phase
     range: MiningPhase
   mining_hazard:
     name: mining_hazard
     definition_uri: https://w3id.org/valuesets/mining_hazard
     description: Mining-related hazards and risks
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:mining_hazard
     range: MiningHazard
   environmental_impact:
     name: environmental_impact
     definition_uri: https://w3id.org/valuesets/environmental_impact
     description: Environmental impacts of mining
-    from_schema: https://w3id.org/linkml/valuesets/industry/mining
+    from_schema: https://w3id.org/valuesets/industry/mining
     slot_uri: valuesets:environmental_impact
     range: EnvironmentalImpact
   extractive_industry_facility_type:
     name: extractive_industry_facility_type
     definition_uri: https://w3id.org/valuesets/extractive_industry_facility_type
     description: Types of extractive industry facilities
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     slot_uri: valuesets:extractive_industry_facility_type
     range: ExtractiveIndustryFacilityTypeEnum
   extractive_industry_product_type:
     name: extractive_industry_product_type
     definition_uri: https://w3id.org/valuesets/extractive_industry_product_type
     description: Types of products extracted from extractive industry facilities
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     slot_uri: valuesets:extractive_industry_product_type
     range: ExtractiveIndustryProductTypeEnum
   mining_method:
     name: mining_method
     definition_uri: https://w3id.org/valuesets/mining_method
     description: Methods used for extracting minerals from the earth
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     slot_uri: valuesets:mining_method
     range: MiningMethodEnum
   well_type:
     name: well_type
     definition_uri: https://w3id.org/valuesets/well_type
     description: Types of wells used for extracting fluid resources
-    from_schema: https://w3id.org/linkml/valuesets/industry/extractive_industry
+    from_schema: https://w3id.org/valuesets/industry/extractive_industry
     slot_uri: valuesets:well_type
     range: WellTypeEnum
   outcome_type:
     name: outcome_type
     definition_uri: https://w3id.org/valuesets/outcome_type
     description: Types of prediction outcomes for classification tasks
-    from_schema: https://w3id.org/linkml/valuesets/statistics/prediction_outcomes
+    from_schema: https://w3id.org/valuesets/statistics/prediction_outcomes
     slot_uri: valuesets:outcome_type
     range: OutcomeTypeEnum
   person_status:
     name: person_status
     definition_uri: https://w3id.org/valuesets/person_status
     description: Vital status of a person (living or deceased)
-    from_schema: https://w3id.org/linkml/valuesets/social/person_status
+    from_schema: https://w3id.org/valuesets/social/person_status
     slot_uri: valuesets:person_status
     range: PersonStatusEnum
   sdoh_domain:
@@ -66567,28 +66567,28 @@ slots:
     name: mime
     definition_uri: https://w3id.org/valuesets/mime
     description: Common MIME types for various file formats
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     slot_uri: valuesets:mime
     range: MimeType
   mime_type_category:
     name: mime_type_category
     definition_uri: https://w3id.org/valuesets/mime_type_category
     description: Categories of MIME types
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     slot_uri: valuesets:mime_type_category
     range: MimeTypeCategory
   text_charset:
     name: text_charset
     definition_uri: https://w3id.org/valuesets/text_charset
     description: Character encodings for text content
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     slot_uri: valuesets:text_charset
     range: TextCharset
   compression:
     name: compression
     definition_uri: https://w3id.org/valuesets/compression
     description: Compression types used with Content-Encoding
-    from_schema: https://w3id.org/linkml/valuesets/computing/mime_types
+    from_schema: https://w3id.org/valuesets/computing/mime_types
     slot_uri: valuesets:compression
     range: CompressionType
   state_of_matter:
@@ -66784,301 +66784,301 @@ slots:
     name: sentiment_classification
     definition_uri: https://w3id.org/valuesets/sentiment_classification
     description: Standard labels for sentiment analysis classification tasks
-    from_schema: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+    from_schema: https://w3id.org/valuesets/data_science/sentiment_analysis
     slot_uri: valuesets:sentiment_classification
     range: SentimentClassificationEnum
   fine_sentiment_classification:
     name: fine_sentiment_classification
     definition_uri: https://w3id.org/valuesets/fine_sentiment_classification
     description: Fine-grained sentiment analysis labels with intensity levels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+    from_schema: https://w3id.org/valuesets/data_science/sentiment_analysis
     slot_uri: valuesets:fine_sentiment_classification
     range: FineSentimentClassificationEnum
   binary_classification:
     name: binary_classification
     definition_uri: https://w3id.org/valuesets/binary_classification
     description: Generic binary classification labels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     slot_uri: valuesets:binary_classification
     range: BinaryClassificationEnum
   spam_classification:
     name: spam_classification
     definition_uri: https://w3id.org/valuesets/spam_classification
     description: Standard labels for spam/ham email classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     slot_uri: valuesets:spam_classification
     range: SpamClassificationEnum
   anomaly_detection:
     name: anomaly_detection
     definition_uri: https://w3id.org/valuesets/anomaly_detection
     description: Labels for anomaly detection tasks
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     slot_uri: valuesets:anomaly_detection
     range: AnomalyDetectionEnum
   churn_classification:
     name: churn_classification
     definition_uri: https://w3id.org/valuesets/churn_classification
     description: Customer churn prediction labels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     slot_uri: valuesets:churn_classification
     range: ChurnClassificationEnum
   fraud_detection:
     name: fraud_detection
     definition_uri: https://w3id.org/valuesets/fraud_detection
     description: Fraud detection classification labels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/binary_classification
+    from_schema: https://w3id.org/valuesets/data_science/binary_classification
     slot_uri: valuesets:fraud_detection
     range: FraudDetectionEnum
   quality_control:
     name: quality_control
     definition_uri: https://w3id.org/valuesets/quality_control
     description: Quality control classification labels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/quality_control
+    from_schema: https://w3id.org/valuesets/data_science/quality_control
     slot_uri: valuesets:quality_control
     range: QualityControlEnum
   defect_classification:
     name: defect_classification
     definition_uri: https://w3id.org/valuesets/defect_classification
     description: Manufacturing defect classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/quality_control
+    from_schema: https://w3id.org/valuesets/data_science/quality_control
     slot_uri: valuesets:defect_classification
     range: DefectClassificationEnum
   basic_emotion:
     name: basic_emotion
     definition_uri: https://w3id.org/valuesets/basic_emotion
     description: Ekman's six basic emotions commonly used in emotion recognition
-    from_schema: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+    from_schema: https://w3id.org/valuesets/data_science/emotion_classification
     slot_uri: valuesets:basic_emotion
     range: BasicEmotionEnum
   extended_emotion:
     name: extended_emotion
     definition_uri: https://w3id.org/valuesets/extended_emotion
     description: Extended emotion set including complex emotions
-    from_schema: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+    from_schema: https://w3id.org/valuesets/data_science/emotion_classification
     slot_uri: valuesets:extended_emotion
     range: ExtendedEmotionEnum
   priority_level:
     name: priority_level
     definition_uri: https://w3id.org/valuesets/priority_level
     description: Standard priority levels for task/issue classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     slot_uri: valuesets:priority_level
     range: PriorityLevelEnum
   severity_level:
     name: severity_level
     definition_uri: https://w3id.org/valuesets/severity_level
     description: Severity levels for incident/bug classification
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     slot_uri: valuesets:severity_level
     range: SeverityLevelEnum
   confidence_level:
     name: confidence_level
     definition_uri: https://w3id.org/valuesets/confidence_level
     description: Confidence levels for predictions and classifications
-    from_schema: https://w3id.org/linkml/valuesets/data_science/priority_severity
+    from_schema: https://w3id.org/valuesets/data_science/priority_severity
     slot_uri: valuesets:confidence_level
     range: ConfidenceLevelEnum
   news_topic_category:
     name: news_topic_category
     definition_uri: https://w3id.org/valuesets/news_topic_category
     description: Common news article topic categories
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     slot_uri: valuesets:news_topic_category
     range: NewsTopicCategoryEnum
   toxicity_classification:
     name: toxicity_classification
     definition_uri: https://w3id.org/valuesets/toxicity_classification
     description: Text toxicity classification labels
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     slot_uri: valuesets:toxicity_classification
     range: ToxicityClassificationEnum
   intent_classification:
     name: intent_classification
     definition_uri: https://w3id.org/valuesets/intent_classification
     description: Common chatbot/NLU intent categories
-    from_schema: https://w3id.org/linkml/valuesets/data_science/text_classification
+    from_schema: https://w3id.org/valuesets/data_science/text_classification
     slot_uri: valuesets:intent_classification
     range: IntentClassificationEnum
   simple_spatial_direction:
     name: simple_spatial_direction
     definition_uri: https://w3id.org/valuesets/simple_spatial_direction
     description: Basic spatial directional terms for general use
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:simple_spatial_direction
     range: SimpleSpatialDirection
   anatomical_side:
     name: anatomical_side
     definition_uri: https://w3id.org/valuesets/anatomical_side
     description: Anatomical sides as defined in the Biological Spatial Ontology (BSPO)
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:anatomical_side
     range: AnatomicalSide
   anatomical_region:
     name: anatomical_region
     definition_uri: https://w3id.org/valuesets/anatomical_region
     description: Anatomical regions based on spatial position
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:anatomical_region
     range: AnatomicalRegion
   anatomical_axis:
     name: anatomical_axis
     definition_uri: https://w3id.org/valuesets/anatomical_axis
     description: Anatomical axes defining spatial organization
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:anatomical_axis
     range: AnatomicalAxis
   anatomical_plane:
     name: anatomical_plane
     definition_uri: https://w3id.org/valuesets/anatomical_plane
     description: Standard anatomical planes for sectioning
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:anatomical_plane
     range: AnatomicalPlane
   spatial_relationship:
     name: spatial_relationship
     definition_uri: https://w3id.org/valuesets/spatial_relationship
     description: Spatial relationships between anatomical structures
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:spatial_relationship
     range: SpatialRelationship
   cell_polarity:
     name: cell_polarity
     definition_uri: https://w3id.org/valuesets/cell_polarity
     description: Spatial polarity in cells and tissues
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:cell_polarity
     range: CellPolarity
   anatomical_orientation:
     name: anatomical_orientation
     definition_uri: https://w3id.org/valuesets/anatomical_orientation
     description: Directional orientation between anatomical positions
-    from_schema: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+    from_schema: https://w3id.org/valuesets/spatial/spatial_qualifiers
     slot_uri: valuesets:anatomical_orientation
     range: AnatomicalOrientation
   crystal_system:
     name: crystal_system
     definition_uri: https://w3id.org/valuesets/crystal_system
     description: The seven crystal systems in crystallography
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/crystal_structures
+    from_schema: https://w3id.org/valuesets/materials_science/crystal_structures
     slot_uri: valuesets:crystal_system
     range: CrystalSystemEnum
   bravais_lattice:
     name: bravais_lattice
     definition_uri: https://w3id.org/valuesets/bravais_lattice
     description: The 14 Bravais lattices describing all possible crystal lattices
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/crystal_structures
+    from_schema: https://w3id.org/valuesets/materials_science/crystal_structures
     slot_uri: valuesets:bravais_lattice
     range: BravaisLatticeEnum
   electrical_conductivity:
     name: electrical_conductivity
     definition_uri: https://w3id.org/valuesets/electrical_conductivity
     description: Classification of materials by electrical conductivity
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     slot_uri: valuesets:electrical_conductivity
     range: ElectricalConductivityEnum
   magnetic_property:
     name: magnetic_property
     definition_uri: https://w3id.org/valuesets/magnetic_property
     description: Classification of materials by magnetic properties
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     slot_uri: valuesets:magnetic_property
     range: MagneticPropertyEnum
   optical_property:
     name: optical_property
     definition_uri: https://w3id.org/valuesets/optical_property
     description: Optical properties of materials
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     slot_uri: valuesets:optical_property
     range: OpticalPropertyEnum
   thermal_conductivity:
     name: thermal_conductivity
     definition_uri: https://w3id.org/valuesets/thermal_conductivity
     description: Classification by thermal conductivity
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     slot_uri: valuesets:thermal_conductivity
     range: ThermalConductivityEnum
   mechanical_behavior:
     name: mechanical_behavior
     definition_uri: https://w3id.org/valuesets/mechanical_behavior
     description: Mechanical behavior of materials under stress
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_properties
+    from_schema: https://w3id.org/valuesets/materials_science/material_properties
     slot_uri: valuesets:mechanical_behavior
     range: MechanicalBehaviorEnum
   microscopy_method:
     name: microscopy_method
     definition_uri: https://w3id.org/valuesets/microscopy_method
     description: Microscopy techniques for material characterization
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     slot_uri: valuesets:microscopy_method
     range: MicroscopyMethodEnum
   spectroscopy_method:
     name: spectroscopy_method
     definition_uri: https://w3id.org/valuesets/spectroscopy_method
     description: Spectroscopy techniques for material analysis
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     slot_uri: valuesets:spectroscopy_method
     range: SpectroscopyMethodEnum
   thermal_analysis_method:
     name: thermal_analysis_method
     definition_uri: https://w3id.org/valuesets/thermal_analysis_method
     description: Thermal analysis techniques
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     slot_uri: valuesets:thermal_analysis_method
     range: ThermalAnalysisMethodEnum
   mechanical_testing_method:
     name: mechanical_testing_method
     definition_uri: https://w3id.org/valuesets/mechanical_testing_method
     description: Mechanical testing methods
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+    from_schema: https://w3id.org/valuesets/materials_science/characterization_methods
     slot_uri: valuesets:mechanical_testing_method
     range: MechanicalTestingMethodEnum
   material_class:
     name: material_class
     definition_uri: https://w3id.org/valuesets/material_class
     description: Major classes of materials
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     slot_uri: valuesets:material_class
     range: MaterialClassEnum
   polymer_type:
     name: polymer_type
     definition_uri: https://w3id.org/valuesets/polymer_type
     description: Types of polymer materials
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     slot_uri: valuesets:polymer_type
     range: PolymerTypeEnum
   metal_type:
     name: metal_type
     definition_uri: https://w3id.org/valuesets/metal_type
     description: Types of metallic materials
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     slot_uri: valuesets:metal_type
     range: MetalTypeEnum
   composite_type:
     name: composite_type
     definition_uri: https://w3id.org/valuesets/composite_type
     description: Types of composite materials
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/material_types
+    from_schema: https://w3id.org/valuesets/materials_science/material_types
     slot_uri: valuesets:composite_type
     range: CompositeTypeEnum
   synthesis_method:
     name: synthesis_method
     definition_uri: https://w3id.org/valuesets/synthesis_method
     description: Common material synthesis and processing methods
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     slot_uri: valuesets:synthesis_method
     range: SynthesisMethodEnum
   crystal_growth_method:
     name: crystal_growth_method
     definition_uri: https://w3id.org/valuesets/crystal_growth_method
     description: Methods for growing single crystals
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     slot_uri: valuesets:crystal_growth_method
     range: CrystalGrowthMethodEnum
   additive_manufacturing:
     name: additive_manufacturing
     definition_uri: https://w3id.org/valuesets/additive_manufacturing
     description: 3D printing and additive manufacturing methods
-    from_schema: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+    from_schema: https://w3id.org/valuesets/materials_science/synthesis_methods
     slot_uri: valuesets:additive_manufacturing
     range: AdditiveManufacturingEnum
   traditional_pigment:
@@ -67247,7 +67247,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/iupac_nucleotide
     description: Complete IUPAC nucleotide codes including ambiguous bases for DNA/RNA
       sequences
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:iupac_nucleotide
     range: IUPACNucleotideCode
   standard_amino_acid:
@@ -67255,7 +67255,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/standard_amino_acid
     description: The 20 standard proteinogenic amino acids with IUPAC single-letter
       codes
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:standard_amino_acid
     range: StandardAminoAcid
   iupac_amino_acid:
@@ -67263,14 +67263,14 @@ slots:
     definition_uri: https://w3id.org/valuesets/iupac_amino_acid
     description: Complete IUPAC amino acid codes including standard amino acids, rare
       amino acids, and ambiguity codes
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:iupac_amino_acid
     range: IUPACAminoAcidCode
   sequence_alphabet:
     name: sequence_alphabet
     definition_uri: https://w3id.org/valuesets/sequence_alphabet
     description: Types of sequence alphabets used in bioinformatics
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:sequence_alphabet
     range: SequenceAlphabet
   sequence_quality_encoding:
@@ -67278,35 +67278,35 @@ slots:
     definition_uri: https://w3id.org/valuesets/sequence_quality_encoding
     description: Quality score encoding standards used in FASTQ files and sequencing
       data
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:sequence_quality_encoding
     range: SequenceQualityEncoding
   genetic_code_table:
     name: genetic_code_table
     definition_uri: https://w3id.org/valuesets/genetic_code_table
     description: NCBI genetic code translation tables for different organisms
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:genetic_code_table
     range: GeneticCodeTable
   sequence_strand:
     name: sequence_strand
     definition_uri: https://w3id.org/valuesets/sequence_strand
     description: Strand orientation for nucleic acid sequences
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:sequence_strand
     range: SequenceStrand
   sequence_topology:
     name: sequence_topology
     definition_uri: https://w3id.org/valuesets/sequence_topology
     description: Topological structure of nucleic acid molecules
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:sequence_topology
     range: SequenceTopology
   sequence_modality:
     name: sequence_modality
     definition_uri: https://w3id.org/valuesets/sequence_modality
     description: Types of sequence data based on experimental method
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+    from_schema: https://w3id.org/valuesets/bio/sequence_chemistry
     slot_uri: valuesets:sequence_modality
     range: SequenceModality
   sequencing_platform:
@@ -67314,49 +67314,49 @@ slots:
     definition_uri: https://w3id.org/valuesets/sequencing_platform
     description: Major DNA/RNA sequencing platforms and instruments used in genomics
       research
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:sequencing_platform
     range: SequencingPlatform
   sequencing_chemistry:
     name: sequencing_chemistry
     definition_uri: https://w3id.org/valuesets/sequencing_chemistry
     description: Fundamental chemical methods used for DNA/RNA sequencing
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:sequencing_chemistry
     range: SequencingChemistry
   library_preparation:
     name: library_preparation
     definition_uri: https://w3id.org/valuesets/library_preparation
     description: Methods for preparing sequencing libraries from nucleic acid samples
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:library_preparation
     range: LibraryPreparation
   sequencing_application:
     name: sequencing_application
     definition_uri: https://w3id.org/valuesets/sequencing_application
     description: Primary applications or assays using DNA/RNA sequencing
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:sequencing_application
     range: SequencingApplication
   read:
     name: read
     definition_uri: https://w3id.org/valuesets/read
     description: Configuration of sequencing reads generated by different platforms
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:read
     range: ReadType
   sequence_file_format:
     name: sequence_file_format
     definition_uri: https://w3id.org/valuesets/sequence_file_format
     description: Standard file formats used for storing sequence data
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:sequence_file_format
     range: SequenceFileFormat
   data_processing_level:
     name: data_processing_level
     definition_uri: https://w3id.org/valuesets/data_processing_level
     description: Levels of processing applied to raw sequencing data
-    from_schema: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+    from_schema: https://w3id.org/valuesets/bio/sequencing_platforms
     slot_uri: valuesets:data_processing_level
     range: DataProcessingLevel
   cds_phase:
@@ -67927,7 +67927,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/race_omb1997
     description: Race categories following OMB 1997 standards used by NIH and federal
       agencies
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:race_omb1997
     range: RaceOMB1997Enum
   ethnicity_omb1997:
@@ -67935,7 +67935,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/ethnicity_omb1997
     description: Ethnicity categories following OMB 1997 standards used by NIH and
       federal agencies
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:ethnicity_omb1997
     range: EthnicityOMB1997Enum
   biological_sex:
@@ -67943,7 +67943,7 @@ slots:
     definition_uri: https://w3id.org/valuesets/biological_sex
     description: Biological sex assigned at birth based on anatomical and physiological
       traits
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:biological_sex
     range: BiologicalSexEnum
   age_group:
@@ -67951,161 +67951,161 @@ slots:
     definition_uri: https://w3id.org/valuesets/age_group
     description: Standard age groups used in NIH clinical research, particularly NINDS
       CDEs
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:age_group
     range: AgeGroupEnum
   participant_vital_status:
     name: participant_vital_status
     definition_uri: https://w3id.org/valuesets/participant_vital_status
     description: Vital status of a research participant in clinical studies
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:participant_vital_status
     range: ParticipantVitalStatusEnum
   recruitment_status:
     name: recruitment_status
     definition_uri: https://w3id.org/valuesets/recruitment_status
     description: Clinical trial or study recruitment status per NIH/ClinicalTrials
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:recruitment_status
     range: RecruitmentStatusEnum
   study_phase:
     name: study_phase
     definition_uri: https://w3id.org/valuesets/study_phase
     description: Clinical trial phases per FDA and NIH definitions
-    from_schema: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+    from_schema: https://w3id.org/valuesets/clinical/nih_demographics
     slot_uri: valuesets:study_phase
     range: StudyPhaseEnum
   karyotypic_sex:
     name: karyotypic_sex
     definition_uri: https://w3id.org/valuesets/karyotypic_sex
     description: Karyotypic sex of an individual based on chromosome composition
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:karyotypic_sex
     range: KaryotypicSexEnum
   phenotypic_sex:
     name: phenotypic_sex
     definition_uri: https://w3id.org/valuesets/phenotypic_sex
     description: Phenotypic sex of an individual based on observable characteristics
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:phenotypic_sex
     range: PhenotypicSexEnum
   allelic_state:
     name: allelic_state
     definition_uri: https://w3id.org/valuesets/allelic_state
     description: Allelic state/zygosity of a variant or genetic feature
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:allelic_state
     range: AllelicStateEnum
   laterality:
     name: laterality
     definition_uri: https://w3id.org/valuesets/laterality
     description: Laterality/sidedness of a finding or anatomical structure
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:laterality
     range: LateralityEnum
   onset_timing:
     name: onset_timing
     definition_uri: https://w3id.org/valuesets/onset_timing
     description: Timing of disease or phenotype onset relative to developmental stages
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:onset_timing
     range: OnsetTimingEnum
   acmg_pathogenicity:
     name: acmg_pathogenicity
     definition_uri: https://w3id.org/valuesets/acmg_pathogenicity
     description: ACMG/AMP variant pathogenicity classification for clinical genetics
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:acmg_pathogenicity
     range: ACMGPathogenicityEnum
   therapeutic_actionability:
     name: therapeutic_actionability
     definition_uri: https://w3id.org/valuesets/therapeutic_actionability
     description: Clinical actionability of a genetic finding for treatment decisions
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:therapeutic_actionability
     range: TherapeuticActionabilityEnum
   interpretation_progress:
     name: interpretation_progress
     definition_uri: https://w3id.org/valuesets/interpretation_progress
     description: Progress status of clinical interpretation or diagnosis
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:interpretation_progress
     range: InterpretationProgressEnum
   regimen_status:
     name: regimen_status
     definition_uri: https://w3id.org/valuesets/regimen_status
     description: Status of a therapeutic regimen or treatment protocol
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:regimen_status
     range: RegimenStatusEnum
   drug_response:
     name: drug_response
     definition_uri: https://w3id.org/valuesets/drug_response
     description: Response categories for drug treatment outcomes
-    from_schema: https://w3id.org/linkml/valuesets/clinical/phenopackets
+    from_schema: https://w3id.org/valuesets/clinical/phenopackets
     slot_uri: valuesets:drug_response
     range: DrugResponseEnum
   process_scale:
     name: process_scale
     definition_uri: https://w3id.org/valuesets/process_scale
     description: Scale of bioprocessing operations from lab bench to commercial production
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:process_scale
     range: ProcessScaleEnum
   bioreactor_type:
     name: bioreactor_type
     definition_uri: https://w3id.org/valuesets/bioreactor_type
     description: Types of bioreactors used in fermentation and cell culture
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:bioreactor_type
     range: BioreactorTypeEnum
   fermentation_mode:
     name: fermentation_mode
     definition_uri: https://w3id.org/valuesets/fermentation_mode
     description: Modes of fermentation operation
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:fermentation_mode
     range: FermentationModeEnum
   oxygenation_strategy:
     name: oxygenation_strategy
     definition_uri: https://w3id.org/valuesets/oxygenation_strategy
     description: Oxygen supply strategies for fermentation
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:oxygenation_strategy
     range: OxygenationStrategyEnum
   agitation_type:
     name: agitation_type
     definition_uri: https://w3id.org/valuesets/agitation_type
     description: Types of agitation/mixing in bioreactors
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:agitation_type
     range: AgitationTypeEnum
   downstream_process:
     name: downstream_process
     definition_uri: https://w3id.org/valuesets/downstream_process
     description: Downstream processing unit operations
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:downstream_process
     range: DownstreamProcessEnum
   feedstock_type:
     name: feedstock_type
     definition_uri: https://w3id.org/valuesets/feedstock_type
     description: Types of feedstocks for bioprocessing
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:feedstock_type
     range: FeedstockTypeEnum
   product_type:
     name: product_type
     definition_uri: https://w3id.org/valuesets/product_type
     description: Types of products from bioprocessing
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:product_type
     range: ProductTypeEnum
   sterilization_method:
     name: sterilization_method
     definition_uri: https://w3id.org/valuesets/sterilization_method
     description: Methods for sterilization in bioprocessing
-    from_schema: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+    from_schema: https://w3id.org/valuesets/bioprocessing/scale_up
     slot_uri: valuesets:sterilization_method
     range: SterilizationMethodEnum
   length_unit:
@@ -68303,448 +68303,448 @@ slots:
     name: legal_entity_type
     definition_uri: https://w3id.org/valuesets/legal_entity_type
     description: Legal structure of business entity
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:legal_entity_type
     range: LegalEntityTypeEnum
   organizational_structure:
     name: organizational_structure
     definition_uri: https://w3id.org/valuesets/organizational_structure
     description: Organizational hierarchy and reporting structure
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:organizational_structure
     range: OrganizationalStructureEnum
   management_level:
     name: management_level
     definition_uri: https://w3id.org/valuesets/management_level
     description: Level within organizational hierarchy
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:management_level
     range: ManagementLevelEnum
   corporate_governance_role:
     name: corporate_governance_role
     definition_uri: https://w3id.org/valuesets/corporate_governance_role
     description: Role in corporate governance structure
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:corporate_governance_role
     range: CorporateGovernanceRoleEnum
   business_ownership_type:
     name: business_ownership_type
     definition_uri: https://w3id.org/valuesets/business_ownership_type
     description: Type of business ownership structure
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:business_ownership_type
     range: BusinessOwnershipTypeEnum
   business_size_classification:
     name: business_size_classification
     definition_uri: https://w3id.org/valuesets/business_size_classification
     description: Size classification of business entity
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:business_size_classification
     range: BusinessSizeClassificationEnum
   business_lifecycle_stage:
     name: business_lifecycle_stage
     definition_uri: https://w3id.org/valuesets/business_lifecycle_stage
     description: Stage in business development lifecycle
-    from_schema: https://w3id.org/linkml/valuesets/business/organizational_structures
+    from_schema: https://w3id.org/valuesets/business/organizational_structures
     slot_uri: valuesets:business_lifecycle_stage
     range: BusinessLifecycleStageEnum
   naics_sector:
     name: naics_sector
     definition_uri: https://w3id.org/valuesets/naics_sector
     description: NAICS two-digit sector classification
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:naics_sector
     range: NAICSSectorEnum
   economic_sector:
     name: economic_sector
     definition_uri: https://w3id.org/valuesets/economic_sector
     description: Broad economic sector classification
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:economic_sector
     range: EconomicSectorEnum
   business_activity_type:
     name: business_activity_type
     definition_uri: https://w3id.org/valuesets/business_activity_type
     description: Type of primary business activity
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:business_activity_type
     range: BusinessActivityTypeEnum
   industry_maturity:
     name: industry_maturity
     definition_uri: https://w3id.org/valuesets/industry_maturity
     description: Industry lifecycle and maturity stage
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:industry_maturity
     range: IndustryMaturityEnum
   market_structure:
     name: market_structure
     definition_uri: https://w3id.org/valuesets/market_structure
     description: Competitive structure of industry market
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:market_structure
     range: MarketStructureEnum
   industry_regulation_level:
     name: industry_regulation_level
     definition_uri: https://w3id.org/valuesets/industry_regulation_level
     description: Level of government regulation in industry
-    from_schema: https://w3id.org/linkml/valuesets/business/industry_classifications
+    from_schema: https://w3id.org/valuesets/business/industry_classifications
     slot_uri: valuesets:industry_regulation_level
     range: IndustryRegulationLevelEnum
   management_methodology:
     name: management_methodology
     definition_uri: https://w3id.org/valuesets/management_methodology
     description: Management approach or methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:management_methodology
     range: ManagementMethodologyEnum
   strategic_framework:
     name: strategic_framework
     definition_uri: https://w3id.org/valuesets/strategic_framework
     description: Strategic planning and analysis framework
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:strategic_framework
     range: StrategicFrameworkEnum
   operational_model:
     name: operational_model
     definition_uri: https://w3id.org/valuesets/operational_model
     description: Business operational model or approach
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:operational_model
     range: OperationalModelEnum
   performance_measurement:
     name: performance_measurement
     definition_uri: https://w3id.org/valuesets/performance_measurement
     description: Performance measurement system or approach
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:performance_measurement
     range: PerformanceMeasurementEnum
   decision_making_style:
     name: decision_making_style
     definition_uri: https://w3id.org/valuesets/decision_making_style
     description: Decision-making approach or style
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:decision_making_style
     range: DecisionMakingStyleEnum
   leadership_style:
     name: leadership_style
     definition_uri: https://w3id.org/valuesets/leadership_style
     description: Leadership approach or style
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:leadership_style
     range: LeadershipStyleEnum
   business_process_type:
     name: business_process_type
     definition_uri: https://w3id.org/valuesets/business_process_type
     description: Type of business process
-    from_schema: https://w3id.org/linkml/valuesets/business/management_operations
+    from_schema: https://w3id.org/valuesets/business/management_operations
     slot_uri: valuesets:business_process_type
     range: BusinessProcessTypeEnum
   quality_standard:
     name: quality_standard
     definition_uri: https://w3id.org/valuesets/quality_standard
     description: Quality management standard or framework
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:quality_standard
     range: QualityStandardEnum
   quality_methodology:
     name: quality_methodology
     definition_uri: https://w3id.org/valuesets/quality_methodology
     description: Quality improvement methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:quality_methodology
     range: QualityMethodologyEnum
   quality_control_technique:
     name: quality_control_technique
     definition_uri: https://w3id.org/valuesets/quality_control_technique
     description: Quality control technique or tool
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:quality_control_technique
     range: QualityControlTechniqueEnum
   quality_assurance_level:
     name: quality_assurance_level
     definition_uri: https://w3id.org/valuesets/quality_assurance_level
     description: Level of quality assurance implementation
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:quality_assurance_level
     range: QualityAssuranceLevelEnum
   process_improvement_approach:
     name: process_improvement_approach
     definition_uri: https://w3id.org/valuesets/process_improvement_approach
     description: Process improvement methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:process_improvement_approach
     range: ProcessImprovementApproachEnum
   quality_maturity_level:
     name: quality_maturity_level
     definition_uri: https://w3id.org/valuesets/quality_maturity_level
     description: Organizational quality maturity level
-    from_schema: https://w3id.org/linkml/valuesets/business/quality_management
+    from_schema: https://w3id.org/valuesets/business/quality_management
     slot_uri: valuesets:quality_maturity_level
     range: QualityMaturityLevelEnum
   procurement_type:
     name: procurement_type
     definition_uri: https://w3id.org/valuesets/procurement_type
     description: Type of procurement activity or approach
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:procurement_type
     range: ProcurementTypeEnum
   vendor_category:
     name: vendor_category
     definition_uri: https://w3id.org/valuesets/vendor_category
     description: Vendor classification category
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:vendor_category
     range: VendorCategoryEnum
   supply_chain_strategy:
     name: supply_chain_strategy
     definition_uri: https://w3id.org/valuesets/supply_chain_strategy
     description: Supply chain strategic approach
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:supply_chain_strategy
     range: SupplyChainStrategyEnum
   logistics_operation:
     name: logistics_operation
     definition_uri: https://w3id.org/valuesets/logistics_operation
     description: Type of logistics operation
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:logistics_operation
     range: LogisticsOperationEnum
   sourcing_strategy:
     name: sourcing_strategy
     definition_uri: https://w3id.org/valuesets/sourcing_strategy
     description: Sourcing strategy approach
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:sourcing_strategy
     range: SourcingStrategyEnum
   supplier_relationship_type:
     name: supplier_relationship_type
     definition_uri: https://w3id.org/valuesets/supplier_relationship_type
     description: Type of supplier relationship management
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:supplier_relationship_type
     range: SupplierRelationshipTypeEnum
   inventory_management_approach:
     name: inventory_management_approach
     definition_uri: https://w3id.org/valuesets/inventory_management_approach
     description: Inventory management methodology
-    from_schema: https://w3id.org/linkml/valuesets/business/supply_chain
+    from_schema: https://w3id.org/valuesets/business/supply_chain
     slot_uri: valuesets:inventory_management_approach
     range: InventoryManagementApproachEnum
   employment_type:
     name: employment_type
     definition_uri: https://w3id.org/valuesets/employment_type
     description: Type of employment arrangement
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:employment_type
     range: EmploymentTypeEnum
   job_level:
     name: job_level
     definition_uri: https://w3id.org/valuesets/job_level
     description: Organizational job level or seniority
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:job_level
     range: JobLevelEnum
   hr_function:
     name: hr_function
     definition_uri: https://w3id.org/valuesets/hr_function
     description: Human resources functional area
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:hr_function
     range: HRFunctionEnum
   compensation_type:
     name: compensation_type
     definition_uri: https://w3id.org/valuesets/compensation_type
     description: Type of employee compensation
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:compensation_type
     range: CompensationTypeEnum
   performance_rating:
     name: performance_rating
     definition_uri: https://w3id.org/valuesets/performance_rating
     description: Employee performance evaluation rating
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:performance_rating
     range: PerformanceRatingEnum
   recruitment_source:
     name: recruitment_source
     definition_uri: https://w3id.org/valuesets/recruitment_source
     description: Source of candidate recruitment
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:recruitment_source
     range: RecruitmentSourceEnum
   training_type:
     name: training_type
     definition_uri: https://w3id.org/valuesets/training_type
     description: Type of employee training or development
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:training_type
     range: TrainingTypeEnum
   employee_status:
     name: employee_status
     definition_uri: https://w3id.org/valuesets/employee_status
     description: Current employment status
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:employee_status
     range: EmployeeStatusEnum
   work_arrangement:
     name: work_arrangement
     definition_uri: https://w3id.org/valuesets/work_arrangement
     description: Work location and arrangement type
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:work_arrangement
     range: WorkArrangementEnum
   benefits_category:
     name: benefits_category
     definition_uri: https://w3id.org/valuesets/benefits_category
     description: Category of employee benefits
-    from_schema: https://w3id.org/linkml/valuesets/business/human_resources
+    from_schema: https://w3id.org/valuesets/business/human_resources
     slot_uri: valuesets:benefits_category
     range: BenefitsCategoryEnum
   laboratory_device_type:
     name: laboratory_device_type
     definition_uri: https://w3id.org/valuesets/laboratory_device_type
     description: Type of automated laboratory equipment or device
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/devices
+    from_schema: https://w3id.org/valuesets/lab_automation/devices
     slot_uri: valuesets:laboratory_device_type
     range: LaboratoryDeviceTypeEnum
   robotic_arm_type:
     name: robotic_arm_type
     definition_uri: https://w3id.org/valuesets/robotic_arm_type
     description: Type of robotic arm used in laboratory automation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/devices
+    from_schema: https://w3id.org/valuesets/lab_automation/devices
     slot_uri: valuesets:robotic_arm_type
     range: RoboticArmTypeEnum
   liquid_handling_operation:
     name: liquid_handling_operation
     definition_uri: https://w3id.org/valuesets/liquid_handling_operation
     description: Type of liquid handling operation in automated laboratory workflows
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/operations
+    from_schema: https://w3id.org/valuesets/lab_automation/operations
     slot_uri: valuesets:liquid_handling_operation
     range: LiquidHandlingOperationEnum
   sample_processing_operation:
     name: sample_processing_operation
     definition_uri: https://w3id.org/valuesets/sample_processing_operation
     description: Type of sample processing operation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/operations
+    from_schema: https://w3id.org/valuesets/lab_automation/operations
     slot_uri: valuesets:sample_processing_operation
     range: SampleProcessingOperationEnum
   microplate_format:
     name: microplate_format
     definition_uri: https://w3id.org/valuesets/microplate_format
     description: Standard microplate well configuration
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     slot_uri: valuesets:microplate_format
     range: MicroplateFormatEnum
   container_type:
     name: container_type
     definition_uri: https://w3id.org/valuesets/container_type
     description: Type of laboratory container
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     slot_uri: valuesets:container_type
     range: ContainerTypeEnum
   plate_material:
     name: plate_material
     definition_uri: https://w3id.org/valuesets/plate_material
     description: Material composition of laboratory plates
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     slot_uri: valuesets:plate_material
     range: PlateMaterialEnum
   plate_coating:
     name: plate_coating
     definition_uri: https://w3id.org/valuesets/plate_coating
     description: Surface treatment of laboratory plates
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/labware
+    from_schema: https://w3id.org/valuesets/lab_automation/labware
     slot_uri: valuesets:plate_coating
     range: PlateCoatingEnum
   workflow_orchestration_type:
     name: workflow_orchestration_type
     definition_uri: https://w3id.org/valuesets/workflow_orchestration_type
     description: Type of workflow orchestration approach
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     slot_uri: valuesets:workflow_orchestration_type
     range: WorkflowOrchestrationTypeEnum
   scheduler_type:
     name: scheduler_type
     definition_uri: https://w3id.org/valuesets/scheduler_type
     description: Type of scheduling algorithm for laboratory automation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     slot_uri: valuesets:scheduler_type
     range: SchedulerTypeEnum
   protocol_state:
     name: protocol_state
     definition_uri: https://w3id.org/valuesets/protocol_state
     description: Execution state of a laboratory protocol
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     slot_uri: valuesets:protocol_state
     range: ProtocolStateEnum
   execution_mode:
     name: execution_mode
     definition_uri: https://w3id.org/valuesets/execution_mode
     description: Mode of protocol execution
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/protocols
+    from_schema: https://w3id.org/valuesets/lab_automation/protocols
     slot_uri: valuesets:execution_mode
     range: ExecutionModeEnum
   automation_standard:
     name: automation_standard
     definition_uri: https://w3id.org/valuesets/automation_standard
     description: Industry standard for laboratory automation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     slot_uri: valuesets:automation_standard
     range: AutomationStandardEnum
   communication_protocol:
     name: communication_protocol
     definition_uri: https://w3id.org/valuesets/communication_protocol
     description: Communication protocol for laboratory device integration
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     slot_uri: valuesets:communication_protocol
     range: CommunicationProtocolEnum
   labware_standard:
     name: labware_standard
     definition_uri: https://w3id.org/valuesets/labware_standard
     description: Standardization specification for laboratory labware
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/standards
+    from_schema: https://w3id.org/valuesets/lab_automation/standards
     slot_uri: valuesets:labware_standard
     range: LabwareStandardEnum
   thermal_cycler_type:
     name: thermal_cycler_type
     definition_uri: https://w3id.org/valuesets/thermal_cycler_type
     description: Type of thermal cycling instrument
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     slot_uri: valuesets:thermal_cycler_type
     range: ThermalCyclerTypeEnum
   pcr_operation_type:
     name: pcr_operation_type
     definition_uri: https://w3id.org/valuesets/pcr_operation_type
     description: Type of PCR operation
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     slot_uri: valuesets:pcr_operation_type
     range: PCROperationTypeEnum
   detection_mode:
     name: detection_mode
     definition_uri: https://w3id.org/valuesets/detection_mode
     description: Detection mode for real-time PCR
-    from_schema: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+    from_schema: https://w3id.org/valuesets/lab_automation/thermal_cycling
     slot_uri: valuesets:detection_mode
     range: DetectionModeEnum
   arxiv_category:
     name: arxiv_category
     definition_uri: https://w3id.org/valuesets/arxiv_category
     description: arXiv subject category for a preprint or publication
-    from_schema: https://w3id.org/linkml/valuesets/publishing/arxiv_categories
+    from_schema: https://w3id.org/valuesets/publishing/arxiv_categories
     slot_uri: valuesets:arxiv_category
     range: ArxivCategory
   arxiv_primary_category:
     name: arxiv_primary_category
     definition_uri: https://w3id.org/valuesets/arxiv_primary_category
     description: Primary arXiv subject category
-    from_schema: https://w3id.org/linkml/valuesets/publishing/arxiv_categories
+    from_schema: https://w3id.org/valuesets/publishing/arxiv_categories
     slot_uri: valuesets:arxiv_primary_category
     range: ArxivCategory
   arxiv_secondary_categories:
     name: arxiv_secondary_categories
     definition_uri: https://w3id.org/valuesets/arxiv_secondary_categories
     description: Secondary/cross-list arXiv subject categories
-    from_schema: https://w3id.org/linkml/valuesets/publishing/arxiv_categories
+    from_schema: https://w3id.org/valuesets/publishing/arxiv_categories
     slot_uri: valuesets:arxiv_secondary_categories
     range: ArxivCategory
     multivalued: true
@@ -68752,98 +68752,98 @@ slots:
     name: osti_workflow_status
     definition_uri: https://w3id.org/valuesets/osti_workflow_status
     description: OSTI workflow status code for a record revision
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_workflow_status
     range: OstiWorkflowStatus
   osti_access_limitation:
     name: osti_access_limitation
     definition_uri: https://w3id.org/valuesets/osti_access_limitation
     description: Access/distribution limitation code for a record
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_access_limitation
     range: OstiAccessLimitation
   osti_collection_type:
     name: osti_collection_type
     definition_uri: https://w3id.org/valuesets/osti_collection_type
     description: OSTI collection type for the record origin
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_collection_type
     range: OstiCollectionType
   osti_sensitivity_flag:
     name: osti_sensitivity_flag
     definition_uri: https://w3id.org/valuesets/osti_sensitivity_flag
     description: OSTI sensitivity flag for released records
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_sensitivity_flag
     range: OstiSensitivityFlag
   osti_organization_identifier_type:
     name: osti_organization_identifier_type
     definition_uri: https://w3id.org/valuesets/osti_organization_identifier_type
     description: Identifier type for OSTI organizations
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_organization_identifier_type
     range: OstiOrganizationIdentifierType
   osti_product_type:
     name: osti_product_type
     definition_uri: https://w3id.org/valuesets/osti_product_type
     description: OSTI product type code
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_product_type
     range: OstiProductType
   osti_organization_type:
     name: osti_organization_type
     definition_uri: https://w3id.org/valuesets/osti_organization_type
     description: OSTI organization role type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_organization_type
     range: OstiOrganizationType
   osti_person_type:
     name: osti_person_type
     definition_uri: https://w3id.org/valuesets/osti_person_type
     description: OSTI person role type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_person_type
     range: OstiPersonType
   osti_contributor_type:
     name: osti_contributor_type
     definition_uri: https://w3id.org/valuesets/osti_contributor_type
     description: OSTI contributor role type
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_contributor_type
     range: OstiContributorType
   osti_related_identifier_type:
     name: osti_related_identifier_type
     definition_uri: https://w3id.org/valuesets/osti_related_identifier_type
     description: Identifier type for related resources in OSTI
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_related_identifier_type
     range: OstiRelatedIdentifierType
   osti_relation_type:
     name: osti_relation_type
     definition_uri: https://w3id.org/valuesets/osti_relation_type
     description: Relationship type between records in OSTI
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_relation_type
     range: OstiRelationType
   osti_identifier_type:
     name: osti_identifier_type
     definition_uri: https://w3id.org/valuesets/osti_identifier_type
     description: Identifier type for OSTI identifiers
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_identifier_type
     range: OstiIdentifierType
   osti_geolocation_type:
     name: osti_geolocation_type
     definition_uri: https://w3id.org/valuesets/osti_geolocation_type
     description: Geolocation shape type used by OSTI
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_geolocation_type
     range: OstiGeolocationType
   osti_media_location_type:
     name: osti_media_location_type
     definition_uri: https://w3id.org/valuesets/osti_media_location_type
     description: Media location indicator for OSTI files and media sets
-    from_schema: https://w3id.org/linkml/valuesets/publishing/osti_record
+    from_schema: https://w3id.org/valuesets/publishing/osti_record
     slot_uri: valuesets:osti_media_location_type
     range: OstiMediaLocationType
   preservation_event_type:
@@ -68941,11 +68941,11 @@ classes:
   Fake:
     name: Fake
     definition_uri: https://w3id.org/valuesets/Fake
-    from_schema: https://w3id.org/linkml/valuesets
+    from_schema: https://w3id.org/valuesets
     class_uri: valuesets:Fake
 metamodel_version: 1.7.0
 source_file: valuesets.yaml
-source_file_date: '2025-12-22T18:22:13'
-source_file_size: 3479
-generation_date: '2026-01-28T07:53:41'
+source_file_date: '2026-01-30T18:18:29'
+source_file_size: 3472
+generation_date: '2026-01-30T18:35:49'
 
diff --git a/docs/slides/valuesets-slides.pdf b/docs/slides/valuesets-slides.pdf
index 0d740395..2b0424e4 100644
Binary files a/docs/slides/valuesets-slides.pdf and b/docs/slides/valuesets-slides.pdf differ
diff --git a/docs/slides/valuesets-slides.pptx b/docs/slides/valuesets-slides.pptx
index 279f1c26..50c8032b 100644
Binary files a/docs/slides/valuesets-slides.pptx and b/docs/slides/valuesets-slides.pptx differ
diff --git a/project/jsonschema/valuesets.schema.json b/project/jsonschema/valuesets.schema.json
index c405f179..b0e6e1d8 100644
--- a/project/jsonschema/valuesets.schema.json
+++ b/project/jsonschema/valuesets.schema.json
@@ -10531,7 +10531,7 @@
             "type": "string"
         }
     },
-    "$id": "https://w3id.org/linkml/valuesets",
+    "$id": "https://w3id.org/valuesets",
     "$schema": "https://json-schema.org/draft/2019-09/schema",
     "additionalProperties": true,
     "metamodel_version": "1.7.0",
diff --git a/scripts/merge_enums_hierarchy.py b/scripts/merge_enums_hierarchy.py
index 329799e5..d514cc1d 100644
--- a/scripts/merge_enums_hierarchy.py
+++ b/scripts/merge_enums_hierarchy.py
@@ -87,14 +87,14 @@ def build_hierarchical_schema(schema_dir: Path) -> Dict[str, Any]:
 
     # Initialize the merged schema
     merged_schema = {
-        'id': 'https://w3id.org/linkml/valuesets/merged',
+        'id': 'https://w3id.org/valuesets/merged',
         'name': 'valuesets_merged_hierarchy',
         'title': 'Merged Value Sets with Hierarchical Structure',
         'description': 'All value sets merged into a single hierarchical structure with is_a relationships',
         'license': 'MIT',
         'prefixes': {
             'linkml': 'https://w3id.org/linkml/',
-            'valuesets': 'https://w3id.org/linkml/valuesets/',
+            'valuesets': 'https://w3id.org/valuesets/',
         },
         'default_prefix': 'valuesets',
         'imports': ['linkml:types'],
diff --git a/src/valuesets/datamodel/valuesets.py b/src/valuesets/datamodel/valuesets.py
index bd82dd4e..620606f8 100644
--- a/src/valuesets/datamodel/valuesets.py
+++ b/src/valuesets/datamodel/valuesets.py
@@ -52,7 +52,7 @@ def __contains__(self, key: str) -> bool:
         return key in self.root
 
 
-linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/linkml/valuesets', 'name': 'valuesets', 'title': 'valuesets'})
+linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/valuesets', 'name': 'valuesets', 'title': 'valuesets'})
 
 class RelativeTimeEnum(RichEnum):
     """
diff --git a/src/valuesets/datamodel/valuesets_dataclass.py b/src/valuesets/datamodel/valuesets_dataclass.py
index 45c8c1bb..02d280d2 100644
--- a/src/valuesets/datamodel/valuesets_dataclass.py
+++ b/src/valuesets/datamodel/valuesets_dataclass.py
@@ -1,8 +1,8 @@
 # Auto generated from valuesets.yaml by pythongen.py version: 0.0.1
-# Generation date: 2025-12-22T07:10:11
+# Generation date: 2026-01-30T18:34:51
 # Schema: valuesets
 #
-# id: https://w3id.org/linkml/valuesets
+# id: https://w3id.org/valuesets
 # description: A collection of commonly used value sets
 # license: Apache-2.0
 
@@ -9850,6 +9850,890 @@ class PersonStatusEnum(EnumDefinitionImpl):
         description="Vital status of a person (living or deceased)",
     )
 
+class GravitySdohDomainEnum(EnumDefinitionImpl):
+    """
+    Social Determinants of Health domains as defined by the Gravity Project. These domains represent key areas of
+    social need that impact health outcomes.
+    """
+    FOOD_INSECURITY = PermissibleValue(
+        text="FOOD_INSECURITY",
+        description="Limited or uncertain availability of nutritionally adequate and safe foods",
+        meaning=NCIT["C171542"])
+    HOUSING_INSTABILITY = PermissibleValue(
+        text="HOUSING_INSTABILITY",
+        description="Challenges with housing including trouble paying rent or frequent moves",
+        meaning=SNOMED["1156191002"])
+    HOMELESSNESS = PermissibleValue(
+        text="HOMELESSNESS",
+        description="The condition of lacking stable, safe, and adequate housing",
+        meaning=SNOMED["32911000"])
+    INADEQUATE_HOUSING = PermissibleValue(
+        text="INADEQUATE_HOUSING",
+        description="Housing that does not meet basic standards for safety and habitability",
+        meaning=SNOMED["105531004"])
+    TRANSPORTATION_INSECURITY = PermissibleValue(
+        text="TRANSPORTATION_INSECURITY",
+        description="Lack of reliable, safe, and affordable transportation")
+    FINANCIAL_INSECURITY = PermissibleValue(
+        text="FINANCIAL_INSECURITY",
+        description="Inability to meet basic financial needs and obligations")
+    MATERIAL_HARDSHIP = PermissibleValue(
+        text="MATERIAL_HARDSHIP",
+        description="Difficulty affording basic necessities such as food, housing, and utilities")
+    EMPLOYMENT_STATUS = PermissibleValue(
+        text="EMPLOYMENT_STATUS",
+        description="Current employment situation and stability",
+        meaning=NCIT["C179143"])
+    EDUCATIONAL_ATTAINMENT = PermissibleValue(
+        text="EDUCATIONAL_ATTAINMENT",
+        description="Highest level of education completed",
+        meaning=EFO["0011015"])
+    VETERAN_STATUS = PermissibleValue(
+        text="VETERAN_STATUS",
+        description="Military veteran status and related needs")
+    STRESS = PermissibleValue(
+        text="STRESS",
+        description="Psychological stress affecting health and wellbeing",
+        meaning=NCIT["C35041"])
+    SOCIAL_CONNECTION = PermissibleValue(
+        text="SOCIAL_CONNECTION",
+        description="Quality and quantity of social relationships and support networks")
+    INTIMATE_PARTNER_VIOLENCE = PermissibleValue(
+        text="INTIMATE_PARTNER_VIOLENCE",
+        description="Abuse occurring between people in a close relationship",
+        meaning=MESH["D000066511"])
+    ELDER_ABUSE = PermissibleValue(
+        text="ELDER_ABUSE",
+        description="Abuse, neglect, or exploitation of older adults",
+        meaning=MESH["D004552"])
+    HEALTH_LITERACY = PermissibleValue(
+        text="HEALTH_LITERACY",
+        description="Ability to obtain, process, and understand health information",
+        meaning=MESH["D057220"])
+    MEDICAL_COST_BURDEN = PermissibleValue(
+        text="MEDICAL_COST_BURDEN",
+        description="Financial strain from healthcare costs")
+    HEALTH_INSURANCE_COVERAGE_STATUS = PermissibleValue(
+        text="HEALTH_INSURANCE_COVERAGE_STATUS",
+        description="Status of health insurance coverage",
+        meaning=NCIT["C157356"])
+    DIGITAL_LITERACY = PermissibleValue(
+        text="DIGITAL_LITERACY",
+        description="Ability to use digital technology and access digital resources")
+    DIGITAL_ACCESS = PermissibleValue(
+        text="DIGITAL_ACCESS",
+        description="Access to internet and digital devices")
+    UTILITY_INSECURITY = PermissibleValue(
+        text="UTILITY_INSECURITY",
+        description="Difficulty paying for utilities such as electricity, gas, or water")
+
+    _defn = EnumDefinition(
+        name="GravitySdohDomainEnum",
+        description="""Social Determinants of Health domains as defined by the Gravity Project. These domains represent key areas of social need that impact health outcomes.""",
+    )
+
+class EducationalAttainmentEnum(EnumDefinitionImpl):
+    """
+    Levels of educational attainment for survey and demographic purposes. Based on standard US educational categories.
+    """
+    EIGHTH_GRADE_OR_LESS = PermissibleValue(
+        text="EIGHTH_GRADE_OR_LESS",
+        description="Completed 8th grade or less")
+    HIGH_SCHOOL_NO_DIPLOMA = PermissibleValue(
+        text="HIGH_SCHOOL_NO_DIPLOMA",
+        description="Some high school but no diploma",
+        meaning=NCIT["C76123"])
+    HIGH_SCHOOL_GRADUATE_GED = PermissibleValue(
+        text="HIGH_SCHOOL_GRADUATE_GED",
+        description="High school graduate or GED equivalent",
+        meaning=NCIT["C67136"])
+    SOME_COLLEGE_NO_DEGREE = PermissibleValue(
+        text="SOME_COLLEGE_NO_DEGREE",
+        description="Some college or technical school but no degree")
+    ASSOCIATE_DEGREE = PermissibleValue(
+        text="ASSOCIATE_DEGREE",
+        description="Associate degree (2-year college)",
+        meaning=NCIT["C71344"])
+    BACHELORS_DEGREE = PermissibleValue(
+        text="BACHELORS_DEGREE",
+        description="Bachelor's degree (4-year college)",
+        meaning=NCIT["C71345"])
+    MASTERS_DEGREE = PermissibleValue(
+        text="MASTERS_DEGREE",
+        description="Master's degree",
+        meaning=NCIT["C39452"])
+    DOCTORAL_DEGREE = PermissibleValue(
+        text="DOCTORAL_DEGREE",
+        description="Doctoral or professional degree (PhD, MD, JD, etc.)",
+        meaning=NCIT["C39387"])
+
+    _defn = EnumDefinition(
+        name="EducationalAttainmentEnum",
+        description="""Levels of educational attainment for survey and demographic purposes. Based on standard US educational categories.""",
+    )
+
+class SpecimenPreparationMethodEnum(EnumDefinitionImpl):
+    """
+    Methods for preparing and preserving biological specimens for analysis. Sourced from NF-OSI metadata dictionary
+    and Human Cell Atlas standards.
+    """
+    FFPE = PermissibleValue(
+        text="FFPE",
+        description="Formalin-fixed, paraffin-embedded tissue preservation",
+        meaning=NCIT["C143028"])
+    FORMALIN_FIXED = PermissibleValue(
+        text="FORMALIN_FIXED",
+        description="Tissue fixed with formalin without paraffin embedding")
+    CRYOPRESERVED = PermissibleValue(
+        text="CRYOPRESERVED",
+        description="Specimen preserved by freezing with cryoprotectant",
+        meaning=NCIT["C16475"])
+    VIABLY_FROZEN = PermissibleValue(
+        text="VIABLY_FROZEN",
+        description="Specimen frozen while maintaining cell viability")
+    FLASH_FROZEN = PermissibleValue(
+        text="FLASH_FROZEN",
+        description="Rapid freezing to preserve molecular integrity")
+    FRESH_COLLECTED = PermissibleValue(
+        text="FRESH_COLLECTED",
+        description="Freshly collected specimen without preservation")
+    OCT_EMBEDDED = PermissibleValue(
+        text="OCT_EMBEDDED",
+        description="Tissue embedded in optimal cutting temperature compound")
+    RNALATER = PermissibleValue(
+        text="RNALATER",
+        description="Storage in reagent that stabilizes and protects cellular RNA")
+    ETHANOL_PRESERVED = PermissibleValue(
+        text="ETHANOL_PRESERVED",
+        description="Specimen preserved in ethanol")
+    METHANOL_FIXED = PermissibleValue(
+        text="METHANOL_FIXED",
+        description="Specimen fixed with methanol")
+    ACETONE_FIXED = PermissibleValue(
+        text="ACETONE_FIXED",
+        description="Specimen fixed with acetone")
+    PAXgene_FIXED = PermissibleValue(
+        text="PAXgene_FIXED",
+        description="Tissue fixed using PAXgene tissue system")
+    DRIED = PermissibleValue(
+        text="DRIED",
+        description="Air-dried or desiccated specimen")
+    LYOPHILIZED = PermissibleValue(
+        text="LYOPHILIZED",
+        description="Freeze-dried specimen",
+        meaning=NCIT["C28150"])
+
+    _defn = EnumDefinition(
+        name="SpecimenPreparationMethodEnum",
+        description="""Methods for preparing and preserving biological specimens for analysis. Sourced from NF-OSI metadata dictionary and Human Cell Atlas standards.""",
+    )
+
+class TissuePreservationEnum(EnumDefinitionImpl):
+    """
+    Broader categorization of tissue preservation approaches
+    """
+    FROZEN = PermissibleValue(
+        text="FROZEN",
+        description="Tissue preserved by freezing",
+        meaning=NCIT["C70717"])
+    FIXED = PermissibleValue(
+        text="FIXED",
+        description="Tissue preserved by chemical fixation",
+        meaning=NCIT["C25219"])
+    FRESH = PermissibleValue(
+        text="FRESH",
+        description="Fresh unfixed tissue")
+    EMBEDDED = PermissibleValue(
+        text="EMBEDDED",
+        description="Tissue embedded in medium (paraffin, OCT, etc.)")
+
+    _defn = EnumDefinition(
+        name="TissuePreservationEnum",
+        description="Broader categorization of tissue preservation approaches",
+    )
+
+class SpecimenCollectionMethodEnum(EnumDefinitionImpl):
+    """
+    Methods for collecting biological specimens
+    """
+    BIOPSY = PermissibleValue(
+        text="BIOPSY",
+        description="Tissue sample obtained by biopsy",
+        meaning=NCIT["C15189"])
+    SURGICAL_RESECTION = PermissibleValue(
+        text="SURGICAL_RESECTION",
+        description="Tissue obtained during surgical resection",
+        meaning=NCIT["C15329"])
+    AUTOPSY = PermissibleValue(
+        text="AUTOPSY",
+        description="Specimen obtained at autopsy",
+        meaning=NCIT["C25153"])
+    FINE_NEEDLE_ASPIRATE = PermissibleValue(
+        text="FINE_NEEDLE_ASPIRATE",
+        description="Sample obtained by fine needle aspiration",
+        meaning=NCIT["C15361"])
+    CORE_NEEDLE_BIOPSY = PermissibleValue(
+        text="CORE_NEEDLE_BIOPSY",
+        description="Sample obtained by core needle biopsy",
+        meaning=NCIT["C15190"])
+    PUNCH_BIOPSY = PermissibleValue(
+        text="PUNCH_BIOPSY",
+        description="Sample obtained by punch biopsy")
+    SWAB = PermissibleValue(
+        text="SWAB",
+        description="Sample collected by swabbing")
+    VENIPUNCTURE = PermissibleValue(
+        text="VENIPUNCTURE",
+        description="Blood sample obtained by venipuncture",
+        meaning=NCIT["C28221"])
+    LUMBAR_PUNCTURE = PermissibleValue(
+        text="LUMBAR_PUNCTURE",
+        description="CSF sample obtained by lumbar puncture",
+        meaning=NCIT["C15327"])
+    LAVAGE = PermissibleValue(
+        text="LAVAGE",
+        description="Sample obtained by lavage (washing)")
+
+    _defn = EnumDefinition(
+        name="SpecimenCollectionMethodEnum",
+        description="Methods for collecting biological specimens",
+    )
+
+class SpecimenTypeEnum(EnumDefinitionImpl):
+    """
+    Types of biological specimens used in research
+    """
+    TISSUE = PermissibleValue(
+        text="TISSUE",
+        description="Solid tissue specimen",
+        meaning=NCIT["C12801"])
+    BLOOD = PermissibleValue(
+        text="BLOOD",
+        description="Whole blood specimen",
+        meaning=NCIT["C12434"])
+    PLASMA = PermissibleValue(
+        text="PLASMA",
+        description="Blood plasma specimen",
+        meaning=NCIT["C13356"])
+    SERUM = PermissibleValue(
+        text="SERUM",
+        description="Blood serum specimen",
+        meaning=NCIT["C13325"])
+    BUFFY_COAT = PermissibleValue(
+        text="BUFFY_COAT",
+        description="Leukocyte-enriched blood fraction",
+        meaning=NCIT["C84507"])
+    URINE = PermissibleValue(
+        text="URINE",
+        description="Urine specimen",
+        meaning=NCIT["C13283"])
+    SALIVA = PermissibleValue(
+        text="SALIVA",
+        description="Saliva specimen",
+        meaning=NCIT["C13275"])
+    STOOL = PermissibleValue(
+        text="STOOL",
+        description="Stool/fecal specimen",
+        meaning=NCIT["C13234"])
+    CSF = PermissibleValue(
+        text="CSF",
+        description="Cerebrospinal fluid specimen",
+        meaning=NCIT["C12692"])
+    SWEAT = PermissibleValue(
+        text="SWEAT",
+        description="Sweat specimen")
+    MUCUS = PermissibleValue(
+        text="MUCUS",
+        description="Mucus specimen")
+    BONE_MARROW = PermissibleValue(
+        text="BONE_MARROW",
+        description="Bone marrow specimen",
+        meaning=NCIT["C12431"])
+    PRIMARY_TUMOR = PermissibleValue(
+        text="PRIMARY_TUMOR",
+        description="Primary tumor tissue specimen",
+        meaning=NCIT["C8509"])
+    METASTATIC_TUMOR = PermissibleValue(
+        text="METASTATIC_TUMOR",
+        description="Metastatic tumor tissue specimen",
+        meaning=NCIT["C3261"])
+    TUMOR_ADJACENT_NORMAL = PermissibleValue(
+        text="TUMOR_ADJACENT_NORMAL",
+        description="Normal tissue adjacent to tumor",
+        meaning=NCIT["C164032"])
+    ORGANOID = PermissibleValue(
+        text="ORGANOID",
+        description="Organoid specimen",
+        meaning=NCIT["C172259"])
+    SPHEROID = PermissibleValue(
+        text="SPHEROID",
+        description="Cell spheroid specimen")
+    MICROTISSUE = PermissibleValue(
+        text="MICROTISSUE",
+        description="Engineered microtissue specimen")
+    PDX_TISSUE = PermissibleValue(
+        text="PDX_TISSUE",
+        description="Patient-derived xenograft tissue",
+        meaning=NCIT["C122936"])
+    CDX_TISSUE = PermissibleValue(
+        text="CDX_TISSUE",
+        description="Cell line-derived xenograft tissue")
+
+    _defn = EnumDefinition(
+        name="SpecimenTypeEnum",
+        description="Types of biological specimens used in research",
+    )
+
+class AnalyteTypeEnum(EnumDefinitionImpl):
+    """
+    Types of analytes that can be extracted from biological specimens for molecular analysis.
+    """
+    DNA = PermissibleValue(
+        text="DNA",
+        description="Deoxyribonucleic acid",
+        meaning=NCIT["C198567"])
+    RNA = PermissibleValue(
+        text="RNA",
+        description="Ribonucleic acid",
+        meaning=NCIT["C198568"])
+    TOTAL_RNA = PermissibleValue(
+        text="TOTAL_RNA",
+        description="Total RNA including all RNA species")
+    FFPE_DNA = PermissibleValue(
+        text="FFPE_DNA",
+        description="DNA extracted from formalin-fixed paraffin-embedded tissue")
+    FFPE_RNA = PermissibleValue(
+        text="FFPE_RNA",
+        description="RNA extracted from formalin-fixed paraffin-embedded tissue")
+    cfDNA = PermissibleValue(
+        text="cfDNA",
+        description="Cell-free DNA found in blood plasma",
+        meaning=NCIT["C128274"])
+    PROTEIN = PermissibleValue(
+        text="PROTEIN",
+        description="Protein analyte",
+        meaning=NCIT["C17021"])
+    NUCLEI_RNA = PermissibleValue(
+        text="NUCLEI_RNA",
+        description="RNA isolated from cell nuclei")
+    REPLI_G_DNA = PermissibleValue(
+        text="REPLI_G_DNA",
+        description="Whole genome amplified DNA using Repli-G technology")
+    REPLI_G_X_DNA = PermissibleValue(
+        text="REPLI_G_X_DNA",
+        description="Whole genome amplified DNA using Repli-G X technology")
+    REPLI_G_POOLED_DNA = PermissibleValue(
+        text="REPLI_G_POOLED_DNA",
+        description="Pooled whole genome amplified DNA using Repli-G")
+    GENOMEPLEX_DNA = PermissibleValue(
+        text="GENOMEPLEX_DNA",
+        description="Whole genome amplified DNA using GenomePlex technology")
+    EBV_IMMORTALIZED = PermissibleValue(
+        text="EBV_IMMORTALIZED",
+        description="DNA/cells from EBV immortalized cell lines")
+
+    _defn = EnumDefinition(
+        name="AnalyteTypeEnum",
+        description="Types of analytes that can be extracted from biological specimens for molecular analysis.",
+    )
+
+class SourceMaterialTypeEnum(EnumDefinitionImpl):
+    """
+    Types of source materials from which specimens are derived, particularly relevant for cancer and tissue banking
+    research.
+    """
+    PRIMARY_TUMOR = PermissibleValue(
+        text="PRIMARY_TUMOR",
+        description="Primary tumor tissue",
+        meaning=NCIT["C8509"])
+    METASTATIC = PermissibleValue(
+        text="METASTATIC",
+        description="Metastatic tumor tissue",
+        meaning=NCIT["C3261"])
+    RECURRENT_TUMOR = PermissibleValue(
+        text="RECURRENT_TUMOR",
+        description="Recurrent tumor tissue",
+        meaning=NCIT["C4798"])
+    BLOOD_DERIVED_NORMAL = PermissibleValue(
+        text="BLOOD_DERIVED_NORMAL",
+        description="Normal cells derived from blood")
+    BLOOD_DERIVED_CANCER_PERIPHERAL_BLOOD = PermissibleValue(
+        text="BLOOD_DERIVED_CANCER_PERIPHERAL_BLOOD",
+        description="Cancer cells from peripheral blood")
+    BLOOD_DERIVED_CANCER_BONE_MARROW = PermissibleValue(
+        text="BLOOD_DERIVED_CANCER_BONE_MARROW",
+        description="Cancer cells from bone marrow")
+    BONE_MARROW_NORMAL = PermissibleValue(
+        text="BONE_MARROW_NORMAL",
+        description="Normal bone marrow cells")
+    SOLID_TISSUE_NORMAL = PermissibleValue(
+        text="SOLID_TISSUE_NORMAL",
+        description="Normal solid tissue")
+    BUCCAL_CELL_NORMAL = PermissibleValue(
+        text="BUCCAL_CELL_NORMAL",
+        description="Normal buccal (cheek) cells")
+    NORMAL_ADJACENT_TISSUE = PermissibleValue(
+        text="NORMAL_ADJACENT_TISSUE",
+        description="Normal tissue adjacent to tumor",
+        meaning=NCIT["C164032"])
+    CELL_LINES = PermissibleValue(
+        text="CELL_LINES",
+        description="Established cell lines",
+        meaning=NCIT["C16403"])
+    PRIMARY_XENOGRAFT_TISSUE = PermissibleValue(
+        text="PRIMARY_XENOGRAFT_TISSUE",
+        description="Tissue from primary xenograft")
+    XENOGRAFT_TISSUE = PermissibleValue(
+        text="XENOGRAFT_TISSUE",
+        description="Tissue derived from xenograft models")
+    NEXT_GENERATION_CANCER_MODEL = PermissibleValue(
+        text="NEXT_GENERATION_CANCER_MODEL",
+        description="Tissue from next-generation cancer models")
+    PLEURAL_EFFUSION = PermissibleValue(
+        text="PLEURAL_EFFUSION",
+        description="Fluid from pleural effusion",
+        meaning=NCIT["C3331"])
+    SALIVA = PermissibleValue(
+        text="SALIVA",
+        description="Saliva specimen",
+        meaning=NCIT["C13275"])
+    GRANULOCYTES = PermissibleValue(
+        text="GRANULOCYTES",
+        description="Granulocyte cells",
+        meaning=NCIT["C12530"])
+    EBV_IMMORTALIZED_NORMAL = PermissibleValue(
+        text="EBV_IMMORTALIZED_NORMAL",
+        description="EBV immortalized normal cells")
+    CONTROL_ANALYTE = PermissibleValue(
+        text="CONTROL_ANALYTE",
+        description="Control analyte material")
+    FFPE_SCROLLS = PermissibleValue(
+        text="FFPE_SCROLLS",
+        description="FFPE tissue scrolls")
+    FFPE_RECURRENT = PermissibleValue(
+        text="FFPE_RECURRENT",
+        description="FFPE tissue from recurrent tumor")
+    NOT_REPORTED = PermissibleValue(
+        text="NOT_REPORTED",
+        description="Source material type not reported")
+    UNKNOWN = PermissibleValue(
+        text="UNKNOWN",
+        description="Unknown source material type",
+        meaning=NCIT["C17998"])
+
+    _defn = EnumDefinition(
+        name="SourceMaterialTypeEnum",
+        description="""Types of source materials from which specimens are derived, particularly relevant for cancer and tissue banking research.""",
+    )
+
+class SpecimenCreationActivityTypeEnum(EnumDefinitionImpl):
+    """
+    High-level types of activities through which specimens are generated, either by collection from source or
+    derivation from existing specimens.
+    """
+    COLLECTION_FROM_SOURCE = PermissibleValue(
+        text="COLLECTION_FROM_SOURCE",
+        description="Activity that collects an initial sample directly from a subject or source",
+        meaning=OBI["0000659"])
+    DERIVATION_FROM_SPECIMEN = PermissibleValue(
+        text="DERIVATION_FROM_SPECIMEN",
+        description="Activity that derives a new specimen from an existing one",
+        meaning=OBI["0000094"])
+
+    _defn = EnumDefinition(
+        name="SpecimenCreationActivityTypeEnum",
+        description="""High-level types of activities through which specimens are generated, either by collection from source or derivation from existing specimens.""",
+    )
+
+class SpecimenProcessingActivityTypeEnum(EnumDefinitionImpl):
+    """
+    High-level types of specimen processing activities
+    """
+    FIXATION = PermissibleValue(
+        text="FIXATION",
+        description="Chemical preservation to maintain structural and molecular features",
+        meaning=NCIT["C25219"])
+    FREEZING = PermissibleValue(
+        text="FREEZING",
+        description="Processing activity that freezes a specimen",
+        meaning=NCIT["C70717"])
+    MOUNTING = PermissibleValue(
+        text="MOUNTING",
+        description="Securing a specimen in place for examination")
+    PRESERVATION = PermissibleValue(
+        text="PRESERVATION",
+        description="Processing activity that preserves a specimen for storage")
+
+    _defn = EnumDefinition(
+        name="SpecimenProcessingActivityTypeEnum",
+        description="High-level types of specimen processing activities",
+    )
+
+class SpecimenQualityObservationTypeEnum(EnumDefinitionImpl):
+    """
+    Types of measurements that reflect specimen quality or suitability for use
+    """
+    A260_A280_RATIO = PermissibleValue(
+        text="A260_A280_RATIO",
+        description="Ratio of absorbance at 260nm to 280nm wavelength for nucleic acid purity")
+    RIBOSOMAL_RNA_28S_16S_RATIO = PermissibleValue(
+        text="RIBOSOMAL_RNA_28S_16S_RATIO",
+        description="Ratio of 28S to 16S ribosomal RNA for RNA integrity")
+
+    _defn = EnumDefinition(
+        name="SpecimenQualityObservationTypeEnum",
+        description="Types of measurements that reflect specimen quality or suitability for use",
+    )
+
+class SpecimenQualityObservationMethodEnum(EnumDefinitionImpl):
+    """
+    Methods used for determining specimen quality
+    """
+    UV_SPEC = PermissibleValue(
+        text="UV_SPEC",
+        description="UV-Vis spectrophotometry measuring absorbance across UV and visible ranges",
+        meaning=NCIT["C116701"])
+    PICO_GREEN = PermissibleValue(
+        text="PICO_GREEN",
+        description="Fluorescent dye assay for quantifying double-stranded DNA")
+
+    _defn = EnumDefinition(
+        name="SpecimenQualityObservationMethodEnum",
+        description="Methods used for determining specimen quality",
+    )
+
+class SpecimenQuantityObservationTypeEnum(EnumDefinitionImpl):
+    """
+    Types of quantity measurements for specimens
+    """
+    WEIGHT = PermissibleValue(
+        text="WEIGHT",
+        description="Current weight of the specimen",
+        meaning=NCIT["C25208"])
+    VOLUME = PermissibleValue(
+        text="VOLUME",
+        description="Current volume of the specimen",
+        meaning=NCIT["C25335"])
+    CONCENTRATION = PermissibleValue(
+        text="CONCENTRATION",
+        description="Concentration of extracted analyte in specimen",
+        meaning=NCIT["C41185"])
+
+    _defn = EnumDefinition(
+        name="SpecimenQuantityObservationTypeEnum",
+        description="Types of quantity measurements for specimens",
+    )
+
+class SectionLocationEnum(EnumDefinitionImpl):
+    """
+    Location in a parent specimen from which a section was excised
+    """
+    TOP = PermissibleValue(
+        text="TOP",
+        description="The top portion of a specimen per orientation criteria")
+    BOTTOM = PermissibleValue(
+        text="BOTTOM",
+        description="The bottom portion of a specimen per orientation criteria")
+    UNKNOWN = PermissibleValue(
+        text="UNKNOWN",
+        description="Unknown location on a specimen",
+        meaning=NCIT["C17998"])
+
+    _defn = EnumDefinition(
+        name="SectionLocationEnum",
+        description="Location in a parent specimen from which a section was excised",
+    )
+
+class ConditionProvenanceEnum(EnumDefinitionImpl):
+    """
+    Sources of condition/diagnosis records indicating how the condition was documented or determined.
+    """
+    EHR_BILLING_DIAGNOSIS = PermissibleValue(
+        text="EHR_BILLING_DIAGNOSIS",
+        description="Diagnosis recorded for billing purposes in EHR")
+    EHR_CHIEF_COMPLAINT = PermissibleValue(
+        text="EHR_CHIEF_COMPLAINT",
+        description="Condition documented as chief complaint in EHR")
+    EHR_ENCOUNTER_DIAGNOSIS = PermissibleValue(
+        text="EHR_ENCOUNTER_DIAGNOSIS",
+        description="Diagnosis recorded during healthcare encounter")
+    EHR_EPISODE_ENTRY = PermissibleValue(
+        text="EHR_EPISODE_ENTRY",
+        description="Condition recorded as part of care episode")
+    EHR_PROBLEM_LIST_ENTRY = PermissibleValue(
+        text="EHR_PROBLEM_LIST_ENTRY",
+        description="Condition on patient problem list in EHR")
+    FIRST_POSITION_CONDITION = PermissibleValue(
+        text="FIRST_POSITION_CONDITION",
+        description="Primary diagnosis in first position on claim")
+    NLP_DERIVED = PermissibleValue(
+        text="NLP_DERIVED",
+        description="Condition derived through natural language processing")
+    OBSERVATION_RECORDED_FROM_EHR = PermissibleValue(
+        text="OBSERVATION_RECORDED_FROM_EHR",
+        description="Condition recorded as observation in EHR")
+    PATIENT_SELF_REPORTED_CONDITION = PermissibleValue(
+        text="PATIENT_SELF_REPORTED_CONDITION",
+        description="Condition reported by the patient")
+    PRIMARY_CONDITION = PermissibleValue(
+        text="PRIMARY_CONDITION",
+        description="Primary condition for an encounter or episode")
+    REFERRAL_RECORD = PermissibleValue(
+        text="REFERRAL_RECORD",
+        description="Condition documented in referral record")
+    SECONDARY_CONDITION = PermissibleValue(
+        text="SECONDARY_CONDITION",
+        description="Secondary or comorbid condition")
+    TUMOR_REGISTRY = PermissibleValue(
+        text="TUMOR_REGISTRY",
+        description="Condition from tumor registry")
+    WORKING_DIAGNOSIS = PermissibleValue(
+        text="WORKING_DIAGNOSIS",
+        description="Preliminary or working diagnosis")
+    CLINICAL_DIAGNOSIS = PermissibleValue(
+        text="CLINICAL_DIAGNOSIS",
+        description="Clinically confirmed diagnosis")
+
+    _defn = EnumDefinition(
+        name="ConditionProvenanceEnum",
+        description="Sources of condition/diagnosis records indicating how the condition was documented or determined.",
+    )
+
+class VisitProvenanceEnum(EnumDefinitionImpl):
+    """
+    Sources of healthcare visit/encounter records indicating the origin of the visit documentation.
+    """
+    CASE_REPORT_FORM = PermissibleValue(
+        text="CASE_REPORT_FORM",
+        description="Visit from clinical trial case report form")
+    CLAIM = PermissibleValue(
+        text="CLAIM",
+        description="Visit derived from insurance claim")
+    EHR = PermissibleValue(
+        text="EHR",
+        description="Visit from electronic health record")
+    EHR_ENCOUNTER_RECORD = PermissibleValue(
+        text="EHR_ENCOUNTER_RECORD",
+        description="Visit from EHR encounter documentation")
+    EHR_ADMISSION_NOTE = PermissibleValue(
+        text="EHR_ADMISSION_NOTE",
+        description="Visit from EHR admission note")
+    EHR_DISCHARGE_RECORD = PermissibleValue(
+        text="EHR_DISCHARGE_RECORD",
+        description="Visit from EHR discharge documentation")
+    EHR_EMERGENCY_ROOM_NOTE = PermissibleValue(
+        text="EHR_EMERGENCY_ROOM_NOTE",
+        description="Visit from EHR emergency room note")
+    EHR_INPATIENT_NOTE = PermissibleValue(
+        text="EHR_INPATIENT_NOTE",
+        description="Visit from EHR inpatient note")
+    EHR_OUTPATIENT_NOTE = PermissibleValue(
+        text="EHR_OUTPATIENT_NOTE",
+        description="Visit from EHR outpatient note")
+    INPATIENT_CLAIM = PermissibleValue(
+        text="INPATIENT_CLAIM",
+        description="Visit from inpatient insurance claim")
+    OUTPATIENT_CLAIM = PermissibleValue(
+        text="OUTPATIENT_CLAIM",
+        description="Visit from outpatient insurance claim")
+    FACILITY_CLAIM = PermissibleValue(
+        text="FACILITY_CLAIM",
+        description="Visit from facility insurance claim")
+    PROFESSIONAL_CLAIM = PermissibleValue(
+        text="PROFESSIONAL_CLAIM",
+        description="Visit from professional services claim")
+    PHARMACY_CLAIM = PermissibleValue(
+        text="PHARMACY_CLAIM",
+        description="Visit from pharmacy claim")
+    LAB = PermissibleValue(
+        text="LAB",
+        description="Visit from laboratory record")
+    REGISTRY = PermissibleValue(
+        text="REGISTRY",
+        description="Visit from disease or patient registry")
+    SURVEY = PermissibleValue(
+        text="SURVEY",
+        description="Visit from patient survey")
+    PATIENT_SELF_REPORT = PermissibleValue(
+        text="PATIENT_SELF_REPORT",
+        description="Visit reported by patient")
+    NLP = PermissibleValue(
+        text="NLP",
+        description="Visit derived through natural language processing")
+    HEALTH_INFORMATION_EXCHANGE_RECORD = PermissibleValue(
+        text="HEALTH_INFORMATION_EXCHANGE_RECORD",
+        description="Visit from health information exchange")
+
+    _defn = EnumDefinition(
+        name="VisitProvenanceEnum",
+        description="Sources of healthcare visit/encounter records indicating the origin of the visit documentation.",
+    )
+
+class DrugExposureProvenanceEnum(EnumDefinitionImpl):
+    """
+    Sources of drug exposure records indicating how the medication information was documented.
+    """
+    RANDOMIZED_DRUG = PermissibleValue(
+        text="RANDOMIZED_DRUG",
+        description="Drug from clinical trial randomization")
+    PATIENT_SELF_REPORTED_MEDICATION = PermissibleValue(
+        text="PATIENT_SELF_REPORTED_MEDICATION",
+        description="Medication reported by patient")
+    NLP_DERIVED = PermissibleValue(
+        text="NLP_DERIVED",
+        description="Drug exposure derived through NLP")
+    PRESCRIPTION_DISPENSED_IN_PHARMACY = PermissibleValue(
+        text="PRESCRIPTION_DISPENSED_IN_PHARMACY",
+        description="Prescription dispensed at pharmacy")
+    PHYSICIAN_ADMINISTERED_DRUG_FROM_EHR_ORDER = PermissibleValue(
+        text="PHYSICIAN_ADMINISTERED_DRUG_FROM_EHR_ORDER",
+        description="Drug administered by physician from EHR order")
+    DISPENSED_IN_OUTPATIENT_OFFICE = PermissibleValue(
+        text="DISPENSED_IN_OUTPATIENT_OFFICE",
+        description="Drug dispensed in outpatient office")
+    PRESCRIPTION_DISPENSED_THROUGH_MAIL_ORDER = PermissibleValue(
+        text="PRESCRIPTION_DISPENSED_THROUGH_MAIL_ORDER",
+        description="Prescription dispensed via mail order")
+    PRESCRIPTION_WRITTEN = PermissibleValue(
+        text="PRESCRIPTION_WRITTEN",
+        description="Prescription written by provider")
+    MEDICATION_LIST_ENTRY = PermissibleValue(
+        text="MEDICATION_LIST_ENTRY",
+        description="Drug from medication list")
+    PHYSICIAN_ADMINISTERED_DRUG_AS_PROCEDURE = PermissibleValue(
+        text="PHYSICIAN_ADMINISTERED_DRUG_AS_PROCEDURE",
+        description="Drug administered as procedure")
+    INPATIENT_ADMINISTRATION = PermissibleValue(
+        text="INPATIENT_ADMINISTRATION",
+        description="Drug administered during inpatient stay")
+
+    _defn = EnumDefinition(
+        name="DrugExposureProvenanceEnum",
+        description="Sources of drug exposure records indicating how the medication information was documented.",
+    )
+
+class StatusEnum(EnumDefinitionImpl):
+    """
+    Values indicating whether a condition or observation is present, absent, or of unknown status.
+    """
+    PRESENT = PermissibleValue(
+        text="PRESENT",
+        description="Was present in the patient at observation time")
+    ABSENT = PermissibleValue(
+        text="ABSENT",
+        description="Was absent in the patient at observation time")
+    UNKNOWN = PermissibleValue(
+        text="UNKNOWN",
+        description="Status was unknown at observation time")
+
+    _defn = EnumDefinition(
+        name="StatusEnum",
+        description="Values indicating whether a condition or observation is present, absent, or of unknown status.",
+    )
+
+class HistoricalStatusEnum(EnumDefinitionImpl):
+    """
+    Extended status values including historical presence of conditions or observations.
+    """
+    PRESENT = PermissibleValue(
+        text="PRESENT",
+        description="Currently present in the patient")
+    ABSENT = PermissibleValue(
+        text="ABSENT",
+        description="Currently absent in the patient")
+    UNKNOWN = PermissibleValue(
+        text="UNKNOWN",
+        description="Current status is unknown")
+    HISTORICAL = PermissibleValue(
+        text="HISTORICAL",
+        description="Was present in the patient historically but not currently")
+
+    _defn = EnumDefinition(
+        name="HistoricalStatusEnum",
+        description="Extended status values including historical presence of conditions or observations.",
+    )
+
+class ResearchProjectTypeEnum(EnumDefinitionImpl):
+    """
+    Types of research projects and studies
+    """
+    CONSORTIUM = PermissibleValue(
+        text="CONSORTIUM",
+        description="Multi-institutional research consortium")
+    STUDY = PermissibleValue(
+        text="STUDY",
+        description="Individual research study")
+
+    _defn = EnumDefinition(
+        name="ResearchProjectTypeEnum",
+        description="Types of research projects and studies",
+    )
+
+class DataUsePermissionEnum(EnumDefinitionImpl):
+    """
+    Primary data use permissions from the GA4GH Data Use Ontology (DUO) indicating what research purposes data can be
+    used for.
+    """
+    GRU = PermissibleValue(
+        text="GRU",
+        description="""General research use - allowed for any research purpose including health/medical/biomedical, fundamental biology, population origins, statistical methods development, and social-sciences research.""",
+        meaning=DUO["0000042"])
+    HMB = PermissibleValue(
+        text="HMB",
+        description="""Health/medical/biomedical research only - does not include study of population origins or ancestry.""",
+        meaning=DUO["0000006"])
+    DS = PermissibleValue(
+        text="DS",
+        description="""Disease-specific research - use allowed only for research related to specified disease(s). Should be coupled with disease ontology term.""",
+        meaning=DUO["0000007"])
+    NO_RESTRICTION = PermissibleValue(
+        text="NO_RESTRICTION",
+        description="No restriction on use of the data.",
+        meaning=DUO["0000004"])
+
+    _defn = EnumDefinition(
+        name="DataUsePermissionEnum",
+        description="""Primary data use permissions from the GA4GH Data Use Ontology (DUO) indicating what research purposes data can be used for.""",
+    )
+
+class DataUseModifierEnum(EnumDefinitionImpl):
+    """
+    Additional conditions and modifiers for data use from the GA4GH Data Use Ontology (DUO).
+    """
+    NPUNCU = PermissibleValue(
+        text="NPUNCU",
+        description="Not-for-profit use only - use limited to not-for-profit organizations and non-commercial use.",
+        meaning=DUO["0000018"])
+    NPO = PermissibleValue(
+        text="NPO",
+        description="Use limited to not-for-profit organizations only.",
+        meaning=DUO["0000045"])
+    NCU = PermissibleValue(
+        text="NCU",
+        description="""Non-commercial use only - data can be used by commercial organizations for research but not commercial purposes.""",
+        meaning=DUO["0000046"])
+    IRB = PermissibleValue(
+        text="IRB",
+        description="Ethics approval required - requestor must provide documentation of local IRB/ERB approval.",
+        meaning=DUO["0000021"])
+    NRES = PermissibleValue(
+        text="NRES",
+        description="No restriction on data use.",
+        meaning=DUO["0000004"])
+    NMDS = PermissibleValue(
+        text="NMDS",
+        description="No general methods research - does not allow methods development.",
+        meaning=DUO["0000015"])
+    RS = PermissibleValue(
+        text="RS",
+        description="Research-specific restrictions apply.",
+        meaning=DUO["0000012"])
+
+    _defn = EnumDefinition(
+        name="DataUseModifierEnum",
+        description="Additional conditions and modifiers for data use from the GA4GH Data Use Ontology (DUO).",
+    )
+
 class MimeType(EnumDefinitionImpl):
     """
     Common MIME types for various file formats
@@ -31309,6 +32193,33 @@ class slots:
 slots.person_status = Slot(uri=VALUESETS.person_status, name="person_status", curie=VALUESETS.curie('person_status'),
                    model_uri=VALUESETS.person_status, domain=None, range=Optional[Union[str, "PersonStatusEnum"]])
 
+slots.sdoh_domain = Slot(uri=VALUESETS.sdoh_domain, name="sdoh_domain", curie=VALUESETS.curie('sdoh_domain'),
+                   model_uri=VALUESETS.sdoh_domain, domain=None, range=Optional[Union[str, "GravitySdohDomainEnum"]])
+
+slots.educational_attainment = Slot(uri=VALUESETS.educational_attainment, name="educational_attainment", curie=VALUESETS.curie('educational_attainment'),
+                   model_uri=VALUESETS.educational_attainment, domain=None, range=Optional[Union[str, "EducationalAttainmentEnum"]])
+
+slots.specimen_preparation_method = Slot(uri=VALUESETS.specimen_preparation_method, name="specimen_preparation_method", curie=VALUESETS.curie('specimen_preparation_method'),
+                   model_uri=VALUESETS.specimen_preparation_method, domain=None, range=Optional[Union[str, "SpecimenPreparationMethodEnum"]])
+
+slots.tissue_preservation = Slot(uri=VALUESETS.tissue_preservation, name="tissue_preservation", curie=VALUESETS.curie('tissue_preservation'),
+                   model_uri=VALUESETS.tissue_preservation, domain=None, range=Optional[Union[str, "TissuePreservationEnum"]])
+
+slots.condition_provenance = Slot(uri=VALUESETS.condition_provenance, name="condition_provenance", curie=VALUESETS.curie('condition_provenance'),
+                   model_uri=VALUESETS.condition_provenance, domain=None, range=Optional[Union[str, "ConditionProvenanceEnum"]])
+
+slots.visit_provenance = Slot(uri=VALUESETS.visit_provenance, name="visit_provenance", curie=VALUESETS.curie('visit_provenance'),
+                   model_uri=VALUESETS.visit_provenance, domain=None, range=Optional[Union[str, "VisitProvenanceEnum"]])
+
+slots.drug_provenance = Slot(uri=VALUESETS.drug_provenance, name="drug_provenance", curie=VALUESETS.curie('drug_provenance'),
+                   model_uri=VALUESETS.drug_provenance, domain=None, range=Optional[Union[str, "DrugExposureProvenanceEnum"]])
+
+slots.data_use_permission = Slot(uri=VALUESETS.data_use_permission, name="data_use_permission", curie=VALUESETS.curie('data_use_permission'),
+                   model_uri=VALUESETS.data_use_permission, domain=None, range=Optional[Union[str, "DataUsePermissionEnum"]])
+
+slots.data_use_modifier = Slot(uri=VALUESETS.data_use_modifier, name="data_use_modifier", curie=VALUESETS.curie('data_use_modifier'),
+                   model_uri=VALUESETS.data_use_modifier, domain=None, range=Optional[Union[str, "DataUseModifierEnum"]])
+
 slots.mime = Slot(uri=VALUESETS.mime, name="mime", curie=VALUESETS.curie('mime'),
                    model_uri=VALUESETS.mime, domain=None, range=Optional[Union[str, "MimeType"]])
 
@@ -32310,3 +33221,4 @@ class slots:
 
 slots.data_service_type = Slot(uri=VALUESETS.data_service_type, name="data_service_type", curie=VALUESETS.curie('data_service_type'),
                    model_uri=VALUESETS.data_service_type, domain=None, range=Optional[Union[str, "DataServiceType"]])
+
diff --git a/src/valuesets/datamodel/valuesets_pydantic.py b/src/valuesets/datamodel/valuesets_pydantic.py
index bd82dd4e..620606f8 100644
--- a/src/valuesets/datamodel/valuesets_pydantic.py
+++ b/src/valuesets/datamodel/valuesets_pydantic.py
@@ -52,7 +52,7 @@ def __contains__(self, key: str) -> bool:
         return key in self.root
 
 
-linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/linkml/valuesets', 'name': 'valuesets', 'title': 'valuesets'})
+linkml_meta = LinkMLMeta({'default_prefix': 'valuesets', 'description': 'A collection of commonly used value sets', 'id': 'https://w3id.org/valuesets', 'name': 'valuesets', 'title': 'valuesets'})
 
 class RelativeTimeEnum(RichEnum):
     """
diff --git a/src/valuesets/generators/sssom_generator.py b/src/valuesets/generators/sssom_generator.py
index e5517f96..15b4b4e2 100644
--- a/src/valuesets/generators/sssom_generator.py
+++ b/src/valuesets/generators/sssom_generator.py
@@ -257,7 +257,7 @@ def write_sssom_tsv(self, mappings: List[Dict[str, Any]], output_path: Path,
 
         # Prepare metadata
         meta = metadata or {}
-        meta.setdefault("mapping_set_id", f"https://w3id.org/linkml/valuesets/mappings")
+        meta.setdefault("mapping_set_id", f"https://w3id.org/valuesets/mappings")
         meta.setdefault("mapping_set_version", datetime.now().strftime("%Y-%m-%d"))
         meta.setdefault("license", "https://creativecommons.org/publicdomain/zero/1.0/")
         meta.setdefault("creator_id", "https://github.com/linkml/linkml-valuesets")
diff --git a/src/valuesets/merged/merged_hierarchy.yaml b/src/valuesets/merged/merged_hierarchy.yaml
index 77906301..145a9379 100644
--- a/src/valuesets/merged/merged_hierarchy.yaml
+++ b/src/valuesets/merged/merged_hierarchy.yaml
@@ -1,11 +1,11 @@
-id: https://w3id.org/linkml/valuesets/merged
+id: https://w3id.org/valuesets/merged
 name: valuesets_merged_hierarchy
 title: Merged Value Sets with Hierarchical Structure
 description: All value sets merged into a single hierarchical structure with is_a relationships
 license: MIT
 prefixes:
   linkml: https://w3id.org/linkml/
-  valuesets: https://w3id.org/linkml/valuesets/
+  valuesets: https://w3id.org/valuesets/
   DCMITYPE: http://purl.org/dc/dcmitype/
   FABIO: http://purl.org/spar/fabio/
   SPDX: https://spdx.org/licenses/
diff --git a/src/valuesets/schema/academic/organizations.yaml b/src/valuesets/schema/academic/organizations.yaml
index 6a1b2847..4bb79f4a 100644
--- a/src/valuesets/schema/academic/organizations.yaml
+++ b/src/valuesets/schema/academic/organizations.yaml
@@ -14,7 +14,7 @@ description: |
   - ROR API: https://api.ror.org/organizations
 
   ROR IDs should be used in the `meaning` field with the full URL format (e.g., https://ror.org/05gvnxz63).
-id: https://w3id.org/linkml/valuesets/academic/organizations
+id: https://w3id.org/valuesets/academic/organizations
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/academic/research.yaml b/src/valuesets/schema/academic/research.yaml
index 54071487..8f093dc8 100644
--- a/src/valuesets/schema/academic/research.yaml
+++ b/src/valuesets/schema/academic/research.yaml
@@ -1,7 +1,7 @@
 name: research
 title: Academic and Research Value Sets
 description: Value sets for academic publishing, research, and scholarly communication
-id: https://w3id.org/linkml/valuesets/academic/research
+id: https://w3id.org/valuesets/academic/research
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/bgc_categories.yaml b/src/valuesets/schema/bio/bgc_categories.yaml
index 133cf661..6be559ac 100644
--- a/src/valuesets/schema/bio/bgc_categories.yaml
+++ b/src/valuesets/schema/bio/bgc_categories.yaml
@@ -7,7 +7,7 @@ description: 'Value sets for biosynthetic gene cluster (BGC) categories used in
   BGCs.
 
   Based on the MIBiG (Minimum Information about a Biosynthetic Gene cluster) standard.'
-id: https://w3id.org/linkml/valuesets/bio/bgc_categories
+id: https://w3id.org/valuesets/bio/bgc_categories
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/bio_entities.yaml b/src/valuesets/schema/bio/bio_entities.yaml
index d0c780b0..db249bf0 100644
--- a/src/valuesets/schema/bio/bio_entities.yaml
+++ b/src/valuesets/schema/bio/bio_entities.yaml
@@ -5,7 +5,7 @@ description: 'Dynamic enumerations for biological entities including anatomical
   cell types, diseases, and chemical entities. These enums are populated
 
   dynamically from ontologies.'
-id: https://w3id.org/linkml/valuesets/bio/bio_entities
+id: https://w3id.org/valuesets/bio/bio_entities
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/biosafety.yaml b/src/valuesets/schema/bio/biosafety.yaml
index 963156d9..3e9a13eb 100644
--- a/src/valuesets/schema/bio/biosafety.yaml
+++ b/src/valuesets/schema/bio/biosafety.yaml
@@ -1,5 +1,5 @@
 name: biosafety
-id: https://w3id.org/linkml/valuesets/bio/biosafety
+id: https://w3id.org/valuesets/bio/biosafety
 prefixes:
   SNOMED: http://snomed.info/id/
   METPO: https://w3id.org/metpo/
diff --git a/src/valuesets/schema/bio/cell_cycle.yaml b/src/valuesets/schema/bio/cell_cycle.yaml
index b8bdcd74..0f0b0410 100644
--- a/src/valuesets/schema/bio/cell_cycle.yaml
+++ b/src/valuesets/schema/bio/cell_cycle.yaml
@@ -1,7 +1,7 @@
 name: cell_cycle
 title: Cell Cycle Value Sets
 description: Value sets for cell cycle phases, checkpoints, and related concepts
-id: https://w3id.org/linkml/valuesets/bio/cell_cycle
+id: https://w3id.org/valuesets/bio/cell_cycle
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/genome_features.yaml b/src/valuesets/schema/bio/genome_features.yaml
index 26fbb567..1296e33a 100644
--- a/src/valuesets/schema/bio/genome_features.yaml
+++ b/src/valuesets/schema/bio/genome_features.yaml
@@ -5,7 +5,7 @@ description: 'Genome feature types from SOFA (Sequence Ontology Feature Annotati
   the subset of SO used in GFF3 files for genome annotation.
 
   Organized hierarchically following the Sequence Ontology structure.'
-id: https://w3id.org/linkml/valuesets/bio/genome_features
+id: https://w3id.org/valuesets/bio/genome_features
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/go_aspect.yaml b/src/valuesets/schema/bio/go_aspect.yaml
index 5ba3d302..3843240f 100644
--- a/src/valuesets/schema/bio/go_aspect.yaml
+++ b/src/valuesets/schema/bio/go_aspect.yaml
@@ -1,7 +1,7 @@
 name: go_aspect
 title: Gene Ontology Aspects
 description: The three main aspects of Gene Ontology - Molecular Function, Biological Process, and Cellular Component
-id: https://w3id.org/linkml/valuesets/bio/go_aspect
+id: https://w3id.org/valuesets/bio/go_aspect
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/go_evidence.yaml b/src/valuesets/schema/bio/go_evidence.yaml
index 329e6095..9823f245 100644
--- a/src/valuesets/schema/bio/go_evidence.yaml
+++ b/src/valuesets/schema/bio/go_evidence.yaml
@@ -1,7 +1,7 @@
 name: go_evidence
 title: Gene Ontology Evidence Codes
 description: Value sets for Gene Ontology evidence codes and electronic annotation methods
-id: https://w3id.org/linkml/valuesets/bio/go_evidence
+id: https://w3id.org/valuesets/bio/go_evidence
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/insdc_geographic_locations.yaml b/src/valuesets/schema/bio/insdc_geographic_locations.yaml
index f21943aa..2509c814 100644
--- a/src/valuesets/schema/bio/insdc_geographic_locations.yaml
+++ b/src/valuesets/schema/bio/insdc_geographic_locations.yaml
@@ -7,7 +7,7 @@ description: 'INSDC controlled vocabulary for geographic locations used in seque
   Countries are mapped to ISO 3166-1 alpha-2 codes using Library of Congress URIs.
 
   Source: https://www.insdc.org/submitting-standards/geo_loc_name-qualifier-vocabulary/'
-id: https://w3id.org/linkml/valuesets/bio/insdc_geographic_locations
+id: https://w3id.org/valuesets/bio/insdc_geographic_locations
 prefixes:
   # linkml_common: https://w3id.org/valuesets/
   insdc: https://www.insdc.org/controlled-vocabulary/geographic-location/
diff --git a/src/valuesets/schema/bio/insdc_missing_values.yaml b/src/valuesets/schema/bio/insdc_missing_values.yaml
index 5bc57d18..cdd4410a 100644
--- a/src/valuesets/schema/bio/insdc_missing_values.yaml
+++ b/src/valuesets/schema/bio/insdc_missing_values.yaml
@@ -1,5 +1,5 @@
 name: insdc_missing_values
-id: https://w3id.org/linkml/valuesets/bio/insdc_missing_values
+id: https://w3id.org/valuesets/bio/insdc_missing_values
 prefixes:
   NCIT: http://purl.obolibrary.org/obo/NCIT_
   OBI: http://purl.obolibrary.org/obo/OBI_
diff --git a/src/valuesets/schema/bio/plant_biology.yaml b/src/valuesets/schema/bio/plant_biology.yaml
index 5d50ea30..afc7975d 100644
--- a/src/valuesets/schema/bio/plant_biology.yaml
+++ b/src/valuesets/schema/bio/plant_biology.yaml
@@ -3,7 +3,7 @@ title: Plant Biology Value Sets
 description: 'Value sets related to plant biology, including reproductive systems,
 
   breeding systems, and other plant-specific characteristics.'
-id: https://w3id.org/linkml/valuesets/bio/plant_biology
+id: https://w3id.org/valuesets/bio/plant_biology
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/plant_experimental_conditions.yaml b/src/valuesets/schema/bio/plant_experimental_conditions.yaml
index b03a3027..e053d457 100644
--- a/src/valuesets/schema/bio/plant_experimental_conditions.yaml
+++ b/src/valuesets/schema/bio/plant_experimental_conditions.yaml
@@ -3,7 +3,7 @@ title: Plant Experimental Conditions Value Sets
 description: >-
   Value sets based on the Plant Experimental Conditions Ontology (PECO),
   including plant exposures and study conditions.
-id: https://w3id.org/linkml/valuesets/bio/plant_experimental_conditions
+id: https://w3id.org/valuesets/bio/plant_experimental_conditions
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/plant_sex.yaml b/src/valuesets/schema/bio/plant_sex.yaml
index cb9715e5..d98a99ab 100644
--- a/src/valuesets/schema/bio/plant_sex.yaml
+++ b/src/valuesets/schema/bio/plant_sex.yaml
@@ -1,5 +1,5 @@
 name: plant_sex
-id: https://w3id.org/linkml/valuesets/bio/plant_sex
+id: https://w3id.org/valuesets/bio/plant_sex
 prefixes:
   PATO: http://purl.obolibrary.org/obo/PATO_
   ECOCORE: http://purl.obolibrary.org/obo/ECOCORE_
diff --git a/src/valuesets/schema/bio/relationship_to_oxygen.yaml b/src/valuesets/schema/bio/relationship_to_oxygen.yaml
index 33313f8f..fec4c460 100644
--- a/src/valuesets/schema/bio/relationship_to_oxygen.yaml
+++ b/src/valuesets/schema/bio/relationship_to_oxygen.yaml
@@ -1,5 +1,5 @@
 name: relationship_to_oxygen
-id: https://w3id.org/linkml/valuesets/bio/relationship_to_oxygen
+id: https://w3id.org/valuesets/bio/relationship_to_oxygen
 prefixes:
   ECOCORE: http://purl.obolibrary.org/obo/ECOCORE_
   OMP: http://purl.obolibrary.org/obo/OMP_
diff --git a/src/valuesets/schema/bio/sequence_chemistry.yaml b/src/valuesets/schema/bio/sequence_chemistry.yaml
index f5e4be8d..f55cdfee 100644
--- a/src/valuesets/schema/bio/sequence_chemistry.yaml
+++ b/src/valuesets/schema/bio/sequence_chemistry.yaml
@@ -3,7 +3,7 @@ title: Sequence Chemistry Value Sets
 description: 'Value sets for nucleic acid and protein sequence chemistry, including
 
   standard and extended alphabets, quality encodings, and molecular representations'
-id: https://w3id.org/linkml/valuesets/bio/sequence_chemistry
+id: https://w3id.org/valuesets/bio/sequence_chemistry
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/sequencing_platforms.yaml b/src/valuesets/schema/bio/sequencing_platforms.yaml
index 81a72bdb..fc10174e 100644
--- a/src/valuesets/schema/bio/sequencing_platforms.yaml
+++ b/src/valuesets/schema/bio/sequencing_platforms.yaml
@@ -1,7 +1,7 @@
 name: sequencing_platforms
 title: Sequencing Platform Value Sets
 description: Value sets for DNA/RNA sequencing platforms, technologies, and methodologies
-id: https://w3id.org/linkml/valuesets/bio/sequencing_platforms
+id: https://w3id.org/valuesets/bio/sequencing_platforms
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/taxonomy.yaml b/src/valuesets/schema/bio/taxonomy.yaml
index f96abc77..1c9c47b4 100644
--- a/src/valuesets/schema/bio/taxonomy.yaml
+++ b/src/valuesets/schema/bio/taxonomy.yaml
@@ -1,7 +1,7 @@
 name: taxonomy
 title: Taxonomic Classifications
 description: Value sets for taxonomic classifications and model organisms
-id: https://w3id.org/linkml/valuesets/bio/taxonomy
+id: https://w3id.org/valuesets/bio/taxonomy
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/bio/trophic_levels.yaml b/src/valuesets/schema/bio/trophic_levels.yaml
index 9c2a31d6..1c73f93d 100644
--- a/src/valuesets/schema/bio/trophic_levels.yaml
+++ b/src/valuesets/schema/bio/trophic_levels.yaml
@@ -1,5 +1,5 @@
 name: trophic_levels
-id: https://w3id.org/linkml/valuesets/bio/trophic_levels
+id: https://w3id.org/valuesets/bio/trophic_levels
 prefixes:
   ECOCORE: http://purl.obolibrary.org/obo/ECOCORE_
   MICRO: http://purl.obolibrary.org/obo/MICRO_
diff --git a/src/valuesets/schema/bio/viral_genome_types.yaml b/src/valuesets/schema/bio/viral_genome_types.yaml
index 4abb2ae7..ebb0a7f5 100644
--- a/src/valuesets/schema/bio/viral_genome_types.yaml
+++ b/src/valuesets/schema/bio/viral_genome_types.yaml
@@ -1,5 +1,5 @@
 name: viral_genome_types
-id: https://w3id.org/linkml/valuesets/bio/viral_genome_types
+id: https://w3id.org/valuesets/bio/viral_genome_types
 prefixes:
   NCIT: http://purl.obolibrary.org/obo/NCIT_
   CHEBI: http://purl.obolibrary.org/obo/CHEBI_
diff --git a/src/valuesets/schema/bioprocessing/scale_up.yaml b/src/valuesets/schema/bioprocessing/scale_up.yaml
index e5287870..c54b1949 100644
--- a/src/valuesets/schema/bioprocessing/scale_up.yaml
+++ b/src/valuesets/schema/bioprocessing/scale_up.yaml
@@ -3,7 +3,7 @@ title: Bioprocessing Scale-up Value Sets
 description: 'Value sets for bioprocessing scale-up facilities, fermentation, and biomanufacturing
 
   operations like those at ABPDU (Advanced Biofuels and Bioproducts Process Development Unit)'
-id: https://w3id.org/linkml/valuesets/bioprocessing/scale_up
+id: https://w3id.org/valuesets/bioprocessing/scale_up
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/human_resources.yaml b/src/valuesets/schema/business/human_resources.yaml
index 8d06e078..b1a446c3 100644
--- a/src/valuesets/schema/business/human_resources.yaml
+++ b/src/valuesets/schema/business/human_resources.yaml
@@ -2,7 +2,7 @@ name: human_resources
 title: Human Resources Management and Workforce Classifications
 description: 'Employment types, HR functions, compensation structures, performance management, and workforce development classifications.
   Based on labor standards, HR best practices, and organizational development frameworks.'
-id: https://w3id.org/linkml/valuesets/business/human_resources
+id: https://w3id.org/valuesets/business/human_resources
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/industry_classifications.yaml b/src/valuesets/schema/business/industry_classifications.yaml
index c67f90b5..3a2abb50 100644
--- a/src/valuesets/schema/business/industry_classifications.yaml
+++ b/src/valuesets/schema/business/industry_classifications.yaml
@@ -2,7 +2,7 @@ name: industry_classifications
 title: Business Industry Classifications and Economic Sectors
 description: 'Industry classification systems including NAICS codes, economic sectors, and business activity categories. Based
   on official government classification systems and international standards for economic analysis and business categorization.'
-id: https://w3id.org/linkml/valuesets/business/industry_classifications
+id: https://w3id.org/valuesets/business/industry_classifications
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/management_operations.yaml b/src/valuesets/schema/business/management_operations.yaml
index c28fbdb3..8d4f369b 100644
--- a/src/valuesets/schema/business/management_operations.yaml
+++ b/src/valuesets/schema/business/management_operations.yaml
@@ -2,7 +2,7 @@ name: management_operations
 title: Business Management and Operations
 description: 'Business management methodologies, operational frameworks, strategic planning approaches, and performance management
   systems. Based on management theory, business strategy frameworks, and operational excellence practices.'
-id: https://w3id.org/linkml/valuesets/business/management_operations
+id: https://w3id.org/valuesets/business/management_operations
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/organizational_structures.yaml b/src/valuesets/schema/business/organizational_structures.yaml
index a07c1bb4..a2dacf62 100644
--- a/src/valuesets/schema/business/organizational_structures.yaml
+++ b/src/valuesets/schema/business/organizational_structures.yaml
@@ -3,7 +3,7 @@ title: Business Organizational Structures and Legal Entities
 description: 'Classifications of business organizational structures including legal entity types, corporate hierarchies, management
   levels, and organizational frameworks. Based on business law standards, corporate governance frameworks, and organizational
   behavior research.'
-id: https://w3id.org/linkml/valuesets/business/organizational_structures
+id: https://w3id.org/valuesets/business/organizational_structures
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/quality_management.yaml b/src/valuesets/schema/business/quality_management.yaml
index 12ef9716..feac5ed6 100644
--- a/src/valuesets/schema/business/quality_management.yaml
+++ b/src/valuesets/schema/business/quality_management.yaml
@@ -2,7 +2,7 @@ name: quality_management
 title: Quality Management Systems and Standards
 description: 'Quality management frameworks, ISO standards, process improvement methodologies, and quality assurance systems.
   Based on international quality standards, continuous improvement methodologies, and quality management best practices.'
-id: https://w3id.org/linkml/valuesets/business/quality_management
+id: https://w3id.org/valuesets/business/quality_management
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/business/supply_chain.yaml b/src/valuesets/schema/business/supply_chain.yaml
index 8d2503ee..01e19ca6 100644
--- a/src/valuesets/schema/business/supply_chain.yaml
+++ b/src/valuesets/schema/business/supply_chain.yaml
@@ -2,7 +2,7 @@ name: supply_chain
 title: Supply Chain Management and Procurement
 description: 'Supply chain management classifications including procurement types, vendor management, logistics operations,
   and supply chain strategies. Based on supply chain management best practices, procurement standards, and logistics frameworks.'
-id: https://w3id.org/linkml/valuesets/business/supply_chain
+id: https://w3id.org/valuesets/business/supply_chain
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/chemistry/roles.yaml b/src/valuesets/schema/chemistry/roles.yaml
index 4cd0717b..d08b963d 100644
--- a/src/valuesets/schema/chemistry/roles.yaml
+++ b/src/valuesets/schema/chemistry/roles.yaml
@@ -3,7 +3,7 @@ title: Chemical and Biological Roles
 description: >-
   Value sets for chemical and biological roles that molecular entities can play,
   based on the ChEBI ontology role hierarchy.
-id: https://w3id.org/linkml/valuesets/chemistry/roles
+id: https://w3id.org/valuesets/chemistry/roles
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/clinical/genetics.yaml b/src/valuesets/schema/clinical/genetics.yaml
index 8cf373d3..5aa122e0 100644
--- a/src/valuesets/schema/clinical/genetics.yaml
+++ b/src/valuesets/schema/clinical/genetics.yaml
@@ -1,7 +1,7 @@
 name: genetics
 title: Clinical Genetics Value Sets
 description: Value sets for clinical genetics including modes of inheritance
-id: https://w3id.org/linkml/valuesets/clinical/genetics
+id: https://w3id.org/valuesets/clinical/genetics
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/clinical/nih_demographics.yaml b/src/valuesets/schema/clinical/nih_demographics.yaml
index f87b4711..4c9d5127 100644
--- a/src/valuesets/schema/clinical/nih_demographics.yaml
+++ b/src/valuesets/schema/clinical/nih_demographics.yaml
@@ -3,7 +3,7 @@ title: NIH Demographics and Common Data Elements
 description: 'Standard value sets for NIH Common Data Elements (CDEs) including demographics,
 
   race, ethnicity, sex, and other clinical variables following NIH and OMB standards'
-id: https://w3id.org/linkml/valuesets/clinical/nih_demographics
+id: https://w3id.org/valuesets/clinical/nih_demographics
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/clinical/phenopackets.yaml b/src/valuesets/schema/clinical/phenopackets.yaml
index deeb6a0b..5d6e24a2 100644
--- a/src/valuesets/schema/clinical/phenopackets.yaml
+++ b/src/valuesets/schema/clinical/phenopackets.yaml
@@ -1,7 +1,7 @@
 name: phenopackets
 title: Phenopackets Clinical Value Sets
 description: Value sets derived from GA4GH Phenopackets Schema for clinical genomics and phenotyping
-id: https://w3id.org/linkml/valuesets/clinical/phenopackets
+id: https://w3id.org/valuesets/clinical/phenopackets
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/computing/geospatial_formats.yaml b/src/valuesets/schema/computing/geospatial_formats.yaml
index 6343f90d..22f46f45 100644
--- a/src/valuesets/schema/computing/geospatial_formats.yaml
+++ b/src/valuesets/schema/computing/geospatial_formats.yaml
@@ -4,7 +4,7 @@ description: >-
   File formats commonly used for geospatial and environmental data, including
   raster formats, vector formats, and scientific data formats with spatial
   extensions.
-id: https://w3id.org/linkml/valuesets/computing/geospatial_formats
+id: https://w3id.org/valuesets/computing/geospatial_formats
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/computing/mime_types.yaml b/src/valuesets/schema/computing/mime_types.yaml
index 7df7bab3..6480b330 100644
--- a/src/valuesets/schema/computing/mime_types.yaml
+++ b/src/valuesets/schema/computing/mime_types.yaml
@@ -2,7 +2,7 @@ name: mime_types
 title: MIME Types Value Sets
 description: Common MIME (Multipurpose Internet Mail Extensions) types for various file formats and content types used 
   in web and application development.
-id: https://w3id.org/linkml/valuesets/computing/mime_types
+id: https://w3id.org/valuesets/computing/mime_types
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/data_science/binary_classification.yaml b/src/valuesets/schema/data_science/binary_classification.yaml
index efb5663f..7dcaff3a 100644
--- a/src/valuesets/schema/data_science/binary_classification.yaml
+++ b/src/valuesets/schema/data_science/binary_classification.yaml
@@ -1,5 +1,5 @@
 name: binary_classification
-id: https://w3id.org/linkml/valuesets/data_science/binary_classification
+id: https://w3id.org/valuesets/data_science/binary_classification
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   STATO: http://purl.obolibrary.org/obo/STATO_
diff --git a/src/valuesets/schema/data_science/emotion_classification.yaml b/src/valuesets/schema/data_science/emotion_classification.yaml
index f779501a..98dfc753 100644
--- a/src/valuesets/schema/data_science/emotion_classification.yaml
+++ b/src/valuesets/schema/data_science/emotion_classification.yaml
@@ -1,5 +1,5 @@
 name: emotion_classification
-id: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+id: https://w3id.org/valuesets/data_science/emotion_classification
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   MFOEM: http://purl.obolibrary.org/obo/MFOEM_
diff --git a/src/valuesets/schema/data_science/priority_severity.yaml b/src/valuesets/schema/data_science/priority_severity.yaml
index 49e8b043..7e555dbd 100644
--- a/src/valuesets/schema/data_science/priority_severity.yaml
+++ b/src/valuesets/schema/data_science/priority_severity.yaml
@@ -1,5 +1,5 @@
 name: priority_severity
-id: https://w3id.org/linkml/valuesets/data_science/priority_severity
+id: https://w3id.org/valuesets/data_science/priority_severity
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/data_science/quality_control.yaml b/src/valuesets/schema/data_science/quality_control.yaml
index e7c4660f..dd6de330 100644
--- a/src/valuesets/schema/data_science/quality_control.yaml
+++ b/src/valuesets/schema/data_science/quality_control.yaml
@@ -1,5 +1,5 @@
 name: quality_control
-id: https://w3id.org/linkml/valuesets/data_science/quality_control
+id: https://w3id.org/valuesets/data_science/quality_control
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/data_science/sentiment_analysis.yaml b/src/valuesets/schema/data_science/sentiment_analysis.yaml
index 85b5948f..8c88132d 100644
--- a/src/valuesets/schema/data_science/sentiment_analysis.yaml
+++ b/src/valuesets/schema/data_science/sentiment_analysis.yaml
@@ -1,5 +1,5 @@
 name: sentiment_analysis
-id: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+id: https://w3id.org/valuesets/data_science/sentiment_analysis
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/data_science/text_classification.yaml b/src/valuesets/schema/data_science/text_classification.yaml
index 21d5dd00..6152391a 100644
--- a/src/valuesets/schema/data_science/text_classification.yaml
+++ b/src/valuesets/schema/data_science/text_classification.yaml
@@ -1,5 +1,5 @@
 name: text_classification
-id: https://w3id.org/linkml/valuesets/data_science/text_classification
+id: https://w3id.org/valuesets/data_science/text_classification
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/energy/energy.yaml b/src/valuesets/schema/energy/energy.yaml
index 660f5981..21582a4a 100644
--- a/src/valuesets/schema/energy/energy.yaml
+++ b/src/valuesets/schema/energy/energy.yaml
@@ -1,7 +1,7 @@
 name: energy
 title: Energy and Power Value Sets
 description: Value sets for energy sources, units, consumption, and related concepts
-id: https://w3id.org/linkml/valuesets/energy/energy
+id: https://w3id.org/valuesets/energy/energy
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/fossil_fuels.yaml b/src/valuesets/schema/energy/fossil_fuels.yaml
index 08c2a978..3c61b0d4 100644
--- a/src/valuesets/schema/energy/fossil_fuels.yaml
+++ b/src/valuesets/schema/energy/fossil_fuels.yaml
@@ -1,5 +1,5 @@
 name: fossil_fuels
-id: https://w3id.org/linkml/valuesets/energy/fossil_fuels
+id: https://w3id.org/valuesets/energy/fossil_fuels
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   ENVO: http://purl.obolibrary.org/obo/ENVO_
diff --git a/src/valuesets/schema/energy/nuclear/nuclear_facilities.yaml b/src/valuesets/schema/energy/nuclear/nuclear_facilities.yaml
index 094edb94..37f0b112 100644
--- a/src/valuesets/schema/energy/nuclear/nuclear_facilities.yaml
+++ b/src/valuesets/schema/energy/nuclear/nuclear_facilities.yaml
@@ -2,7 +2,7 @@ name: nuclear_facilities
 title: Nuclear Facilities and Infrastructure Types
 description: 'Classifications of nuclear facilities including power plants, research reactors, fuel cycle facilities, waste
   management facilities, and nuclear infrastructure. Based on IAEA classifications and nuclear industry standards.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_facilities
+id: https://w3id.org/valuesets/energy/nuclear/nuclear_facilities
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/nuclear/nuclear_fuels.yaml b/src/valuesets/schema/energy/nuclear/nuclear_fuels.yaml
index 37814055..65d91f7d 100644
--- a/src/valuesets/schema/energy/nuclear/nuclear_fuels.yaml
+++ b/src/valuesets/schema/energy/nuclear/nuclear_fuels.yaml
@@ -2,7 +2,7 @@ name: nuclear_fuels
 title: Nuclear Fuel Types and Classifications
 description: 'Classifications of nuclear fuel types including uranium enrichment levels, fuel forms, and alternative fuel
   cycles. Based on IAEA classifications, nuclear fuel cycle standards, and industry specifications.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_fuels
+id: https://w3id.org/valuesets/energy/nuclear/nuclear_fuels
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/nuclear/nuclear_operations.yaml b/src/valuesets/schema/energy/nuclear/nuclear_operations.yaml
index 36d3f67a..7201ed07 100644
--- a/src/valuesets/schema/energy/nuclear/nuclear_operations.yaml
+++ b/src/valuesets/schema/energy/nuclear/nuclear_operations.yaml
@@ -2,7 +2,7 @@ name: nuclear_operations
 title: Nuclear Operations and Reactor States
 description: 'Classifications for nuclear reactor operational states, maintenance activities, licensing stages, and operational
   procedures. Based on nuclear industry standards and regulatory frameworks.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_operations
+id: https://w3id.org/valuesets/energy/nuclear/nuclear_operations
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/nuclear/nuclear_safety.yaml b/src/valuesets/schema/energy/nuclear/nuclear_safety.yaml
index 42df935c..2ddce07d 100644
--- a/src/valuesets/schema/energy/nuclear/nuclear_safety.yaml
+++ b/src/valuesets/schema/energy/nuclear/nuclear_safety.yaml
@@ -2,7 +2,7 @@ name: nuclear_safety
 title: Nuclear Safety Classifications and Emergency Levels
 description: 'Nuclear safety classifications including INES scale, emergency action levels, nuclear security categories, and
   safety system classifications. Based on IAEA standards, NRC regulations, and international nuclear safety frameworks.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_safety
+id: https://w3id.org/valuesets/energy/nuclear/nuclear_safety
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/nuclear/nuclear_waste.yaml b/src/valuesets/schema/energy/nuclear/nuclear_waste.yaml
index fc657871..82f225c8 100644
--- a/src/valuesets/schema/energy/nuclear/nuclear_waste.yaml
+++ b/src/valuesets/schema/energy/nuclear/nuclear_waste.yaml
@@ -2,7 +2,7 @@ name: nuclear_waste
 title: Nuclear Waste Classifications
 description: 'Classifications of radioactive waste based on IAEA standards, NRC 10 CFR 61 classifications, and international
   waste management standards. Includes activity levels, disposal requirements, and time scales.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/nuclear_waste
+id: https://w3id.org/valuesets/energy/nuclear/nuclear_waste
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/nuclear/reactor_types.yaml b/src/valuesets/schema/energy/nuclear/reactor_types.yaml
index 7b288f72..2b9224dc 100644
--- a/src/valuesets/schema/energy/nuclear/reactor_types.yaml
+++ b/src/valuesets/schema/energy/nuclear/reactor_types.yaml
@@ -2,7 +2,7 @@ name: nuclear_reactor_types
 title: Nuclear Reactor Types and Classifications
 description: 'Classifications of nuclear reactor types based on coolant, moderator, neutron spectrum, and generational designs.
   Based on World Nuclear Association classifications, IAEA reactor types, and industry standards.'
-id: https://w3id.org/linkml/valuesets/energy/nuclear/reactor_types
+id: https://w3id.org/valuesets/energy/nuclear/reactor_types
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/renewable/bioenergy.yaml b/src/valuesets/schema/energy/renewable/bioenergy.yaml
index cc70d7dd..88aacdcd 100644
--- a/src/valuesets/schema/energy/renewable/bioenergy.yaml
+++ b/src/valuesets/schema/energy/renewable/bioenergy.yaml
@@ -3,7 +3,7 @@ title: Bioenergy and Biofuels Value Sets
 description: >-
   Value sets for bioenergy feedstocks, biofuels, and conversion processes.
   Based on DOE Bioenergy Technologies Office terminology and glossary.
-id: https://w3id.org/linkml/valuesets/energy/renewable/bioenergy
+id: https://w3id.org/valuesets/energy/renewable/bioenergy
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/renewable/geothermal.yaml b/src/valuesets/schema/energy/renewable/geothermal.yaml
index e5b047b5..7aa1c858 100644
--- a/src/valuesets/schema/energy/renewable/geothermal.yaml
+++ b/src/valuesets/schema/energy/renewable/geothermal.yaml
@@ -3,7 +3,7 @@ title: Geothermal Energy Value Sets
 description: >-
   Value sets for geothermal energy systems, reservoir types, well types, and technologies.
   Based on DOE Geothermal Technologies Office terminology and the Geothermal Data Repository standards.
-id: https://w3id.org/linkml/valuesets/energy/renewable/geothermal
+id: https://w3id.org/valuesets/energy/renewable/geothermal
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/energy/renewable/hydrogen.yaml b/src/valuesets/schema/energy/renewable/hydrogen.yaml
index 1806f528..39d6cfff 100644
--- a/src/valuesets/schema/energy/renewable/hydrogen.yaml
+++ b/src/valuesets/schema/energy/renewable/hydrogen.yaml
@@ -4,7 +4,7 @@ description: >-
   Value sets for hydrogen production, storage, and utilization.
   Includes the color-coded hydrogen classification system used by industry.
   Based on DOE Hydrogen and Fuel Cell Technologies Office terminology.
-id: https://w3id.org/linkml/valuesets/energy/renewable/hydrogen
+id: https://w3id.org/valuesets/energy/renewable/hydrogen
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/environmental_health/carcinogenicity.yaml b/src/valuesets/schema/environmental_health/carcinogenicity.yaml
index 8ddde0c8..c3e52c45 100644
--- a/src/valuesets/schema/environmental_health/carcinogenicity.yaml
+++ b/src/valuesets/schema/environmental_health/carcinogenicity.yaml
@@ -4,7 +4,7 @@ description: >-
   Standard carcinogenicity classifications from IARC (International Agency for
   Research on Cancer), EPA IRIS (Integrated Risk Information System), and NTP
   (National Toxicology Program).
-id: https://w3id.org/linkml/valuesets/environmental_health/carcinogenicity
+id: https://w3id.org/valuesets/environmental_health/carcinogenicity
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/environmental_health/gb_edoh.yaml b/src/valuesets/schema/environmental_health/gb_edoh.yaml
index 67b23323..51b84632 100644
--- a/src/valuesets/schema/environmental_health/gb_edoh.yaml
+++ b/src/valuesets/schema/environmental_health/gb_edoh.yaml
@@ -5,7 +5,7 @@ description: >-
   program for standardizing geospatial-based environmental determinants of health
   (GB-EDoH) data and metadata. These value sets support OMOP integration and
   environmental epidemiology studies.
-id: https://w3id.org/linkml/valuesets/environmental_health/gb_edoh
+id: https://w3id.org/valuesets/environmental_health/gb_edoh
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/environmental_health/radionuclides.yaml b/src/valuesets/schema/environmental_health/radionuclides.yaml
index c9f0fe33..421e5dc5 100644
--- a/src/valuesets/schema/environmental_health/radionuclides.yaml
+++ b/src/valuesets/schema/environmental_health/radionuclides.yaml
@@ -3,7 +3,7 @@ title: Radionuclide Value Sets
 description: >-
   Radioactive elements and isotopes of environmental and health concern,
   commonly measured in environmental monitoring and exposure assessment.
-id: https://w3id.org/linkml/valuesets/environmental_health/radionuclides
+id: https://w3id.org/valuesets/environmental_health/radionuclides
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/industry/extractive_industry.yaml b/src/valuesets/schema/industry/extractive_industry.yaml
index 67c3e3fe..c4718593 100644
--- a/src/valuesets/schema/industry/extractive_industry.yaml
+++ b/src/valuesets/schema/industry/extractive_industry.yaml
@@ -1,5 +1,5 @@
 name: extractive_industry
-id: https://w3id.org/linkml/valuesets/industry/extractive_industry
+id: https://w3id.org/valuesets/industry/extractive_industry
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   valuesets: https://w3id.org/valuesets/
diff --git a/src/valuesets/schema/industry/mining.yaml b/src/valuesets/schema/industry/mining.yaml
index a9f0a1c1..2547b3f5 100644
--- a/src/valuesets/schema/industry/mining.yaml
+++ b/src/valuesets/schema/industry/mining.yaml
@@ -1,7 +1,7 @@
 name: mining
 title: Mining and Extractive Industry Value Sets
 description: Value sets for mining operations, minerals, extraction methods, and related concepts
-id: https://w3id.org/linkml/valuesets/industry/mining
+id: https://w3id.org/valuesets/industry/mining
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/lab_automation/devices.yaml b/src/valuesets/schema/lab_automation/devices.yaml
index 755739fe..d7b3ab84 100644
--- a/src/valuesets/schema/lab_automation/devices.yaml
+++ b/src/valuesets/schema/lab_automation/devices.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_devices
-id: https://w3id.org/linkml/valuesets/lab_automation/devices
+id: https://w3id.org/valuesets/lab_automation/devices
 prefixes:
   OBI: http://purl.obolibrary.org/obo/OBI_
   SNOMED: http://snomed.info/id/
diff --git a/src/valuesets/schema/lab_automation/labware.yaml b/src/valuesets/schema/lab_automation/labware.yaml
index 9afc1e6d..56ea772c 100644
--- a/src/valuesets/schema/lab_automation/labware.yaml
+++ b/src/valuesets/schema/lab_automation/labware.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_labware
-id: https://w3id.org/linkml/valuesets/lab_automation/labware
+id: https://w3id.org/valuesets/lab_automation/labware
 prefixes:
   NCIT: http://purl.obolibrary.org/obo/NCIT_
   BAO: http://www.bioassayontology.org/bao#BAO_
diff --git a/src/valuesets/schema/lab_automation/operations.yaml b/src/valuesets/schema/lab_automation/operations.yaml
index cf11b1b4..274656d3 100644
--- a/src/valuesets/schema/lab_automation/operations.yaml
+++ b/src/valuesets/schema/lab_automation/operations.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_operations
-id: https://w3id.org/linkml/valuesets/lab_automation/operations
+id: https://w3id.org/valuesets/lab_automation/operations
 prefixes:
   EFO: http://www.ebi.ac.uk/efo/EFO_
   MMO: http://purl.obolibrary.org/obo/MMO_
diff --git a/src/valuesets/schema/lab_automation/protocols.yaml b/src/valuesets/schema/lab_automation/protocols.yaml
index d17c11ec..8271f9c5 100644
--- a/src/valuesets/schema/lab_automation/protocols.yaml
+++ b/src/valuesets/schema/lab_automation/protocols.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_protocols
-id: https://w3id.org/linkml/valuesets/lab_automation/protocols
+id: https://w3id.org/valuesets/lab_automation/protocols
 prefixes:
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
diff --git a/src/valuesets/schema/lab_automation/standards.yaml b/src/valuesets/schema/lab_automation/standards.yaml
index 7ea17695..611491b6 100644
--- a/src/valuesets/schema/lab_automation/standards.yaml
+++ b/src/valuesets/schema/lab_automation/standards.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_standards
-id: https://w3id.org/linkml/valuesets/lab_automation/standards
+id: https://w3id.org/valuesets/lab_automation/standards
 prefixes:
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
diff --git a/src/valuesets/schema/lab_automation/thermal_cycling.yaml b/src/valuesets/schema/lab_automation/thermal_cycling.yaml
index dea8a929..934f4b95 100644
--- a/src/valuesets/schema/lab_automation/thermal_cycling.yaml
+++ b/src/valuesets/schema/lab_automation/thermal_cycling.yaml
@@ -1,5 +1,5 @@
 name: lab_automation_thermal_cycling
-id: https://w3id.org/linkml/valuesets/lab_automation/thermal_cycling
+id: https://w3id.org/valuesets/lab_automation/thermal_cycling
 prefixes:
   OBI: http://purl.obolibrary.org/obo/OBI_
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/materials_science/characterization_methods.yaml b/src/valuesets/schema/materials_science/characterization_methods.yaml
index 81467346..891536e3 100644
--- a/src/valuesets/schema/materials_science/characterization_methods.yaml
+++ b/src/valuesets/schema/materials_science/characterization_methods.yaml
@@ -1,5 +1,5 @@
 name: characterization_methods
-id: https://w3id.org/linkml/valuesets/materials_science/characterization_methods
+id: https://w3id.org/valuesets/materials_science/characterization_methods
 prefixes:
   OBI: http://purl.obolibrary.org/obo/OBI_
   CHMO: http://purl.obolibrary.org/obo/CHMO_
diff --git a/src/valuesets/schema/materials_science/crystal_structures.yaml b/src/valuesets/schema/materials_science/crystal_structures.yaml
index 754277da..d5a7446d 100644
--- a/src/valuesets/schema/materials_science/crystal_structures.yaml
+++ b/src/valuesets/schema/materials_science/crystal_structures.yaml
@@ -1,5 +1,5 @@
 name: crystal_structures
-id: https://w3id.org/linkml/valuesets/materials_science/crystal_structures
+id: https://w3id.org/valuesets/materials_science/crystal_structures
 prefixes:
   CHEBI: http://purl.obolibrary.org/obo/CHEBI_
   EMMO: http://emmo.info/emmo#
diff --git a/src/valuesets/schema/materials_science/material_properties.yaml b/src/valuesets/schema/materials_science/material_properties.yaml
index 1b157863..e38e2e7c 100644
--- a/src/valuesets/schema/materials_science/material_properties.yaml
+++ b/src/valuesets/schema/materials_science/material_properties.yaml
@@ -1,5 +1,5 @@
 name: material_properties
-id: https://w3id.org/linkml/valuesets/materials_science/material_properties
+id: https://w3id.org/valuesets/materials_science/material_properties
 prefixes:
   CHEBI: http://purl.obolibrary.org/obo/CHEBI_
   NCIT: http://purl.obolibrary.org/obo/NCIT_
diff --git a/src/valuesets/schema/materials_science/material_types.yaml b/src/valuesets/schema/materials_science/material_types.yaml
index 32d95e78..f4726b5c 100644
--- a/src/valuesets/schema/materials_science/material_types.yaml
+++ b/src/valuesets/schema/materials_science/material_types.yaml
@@ -1,5 +1,5 @@
 name: material_types
-id: https://w3id.org/linkml/valuesets/materials_science/material_types
+id: https://w3id.org/valuesets/materials_science/material_types
 prefixes:
   CHEBI: http://purl.obolibrary.org/obo/CHEBI_
   ENVO: http://purl.obolibrary.org/obo/ENVO_
diff --git a/src/valuesets/schema/materials_science/synthesis_methods.yaml b/src/valuesets/schema/materials_science/synthesis_methods.yaml
index 635eadd1..63ab69df 100644
--- a/src/valuesets/schema/materials_science/synthesis_methods.yaml
+++ b/src/valuesets/schema/materials_science/synthesis_methods.yaml
@@ -1,5 +1,5 @@
 name: synthesis_methods
-id: https://w3id.org/linkml/valuesets/materials_science/synthesis_methods
+id: https://w3id.org/valuesets/materials_science/synthesis_methods
 prefixes:
   OBI: http://purl.obolibrary.org/obo/OBI_
   CHMO: http://purl.obolibrary.org/obo/CHMO_
diff --git a/src/valuesets/schema/medical/oncology/icdo.yaml b/src/valuesets/schema/medical/oncology/icdo.yaml
index 49c6f485..f8b8c9a4 100644
--- a/src/valuesets/schema/medical/oncology/icdo.yaml
+++ b/src/valuesets/schema/medical/oncology/icdo.yaml
@@ -4,7 +4,7 @@ description: >-
   Value sets based on the International Classification of Diseases for Oncology
   (ICD-O) bi-axial classification system. ICD-O uses two independent axes:
   topography (anatomic site) and morphology (histological type and behavior).
-id: https://w3id.org/linkml/valuesets/medical/oncology/icdo
+id: https://w3id.org/valuesets/medical/oncology/icdo
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/medical/pediatric_oncology/diagnosis_categories.yaml b/src/valuesets/schema/medical/pediatric_oncology/diagnosis_categories.yaml
index f1a5b89d..0d872209 100644
--- a/src/valuesets/schema/medical/pediatric_oncology/diagnosis_categories.yaml
+++ b/src/valuesets/schema/medical/pediatric_oncology/diagnosis_categories.yaml
@@ -6,7 +6,7 @@ description: >-
   developed through consensus by St. Jude, CBTN, Treehouse, and NCI to enable
   cohort aggregation across federated pediatric cancer data resources.
   Categories are aligned with WHO CNS5, WHO-HAEM5, and WHO Pediatric Blue Book.
-id: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/diagnosis_categories
+id: https://w3id.org/valuesets/medical/pediatric_oncology/diagnosis_categories
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/medical/pediatric_oncology/iccc3.yaml b/src/valuesets/schema/medical/pediatric_oncology/iccc3.yaml
index 8f9b125b..d5bf664e 100644
--- a/src/valuesets/schema/medical/pediatric_oncology/iccc3.yaml
+++ b/src/valuesets/schema/medical/pediatric_oncology/iccc3.yaml
@@ -6,7 +6,7 @@ description: >-
   cancers, emphasizing tumor morphology rather than primary site (as used for
   adult cancers). ICCC-3 classifies tumors coded according to ICD-O-3 into
   12 main groups and 47 subgroups.
-id: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/iccc3
+id: https://w3id.org/valuesets/medical/pediatric_oncology/iccc3
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/medical/pediatric_oncology/staging/neuroblastoma.yaml b/src/valuesets/schema/medical/pediatric_oncology/staging/neuroblastoma.yaml
index 49d0a05d..98140360 100644
--- a/src/valuesets/schema/medical/pediatric_oncology/staging/neuroblastoma.yaml
+++ b/src/valuesets/schema/medical/pediatric_oncology/staging/neuroblastoma.yaml
@@ -6,7 +6,7 @@ description: >-
   System (INSS). INRGSS is the current standard (effective 2024+) based on
   imaging and image-defined risk factors. INSS is the legacy surgical staging
   system still used for historical data.
-id: https://w3id.org/linkml/valuesets/medical/pediatric_oncology/staging/neuroblastoma
+id: https://w3id.org/valuesets/medical/pediatric_oncology/staging/neuroblastoma
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/mining_processing.yaml b/src/valuesets/schema/mining_processing.yaml
index 6e31f6b5..0984b0b0 100644
--- a/src/valuesets/schema/mining_processing.yaml
+++ b/src/valuesets/schema/mining_processing.yaml
@@ -158,10 +158,11 @@ enums:
       BIOLEACH_IRON_OXIDIZING:
         description: Bioleaching using iron-oxidizing bacteria
   ExtractableTargetElement:
-    title: Extractable Target Element
-    description: 'Target elements for extraction, particularly rare earth elements (REE) and critical minerals.
-
-      '
+    title: Extractable Target Elements
+    description: >-
+      Target elements for extraction in mining operations, including rare earth elements (REE),
+      critical minerals, and battery metals. These elements are strategically important for
+      clean energy technologies, electronics, and defense applications.
     status: DRAFT
     contributors:
     - orcid:0000-0002-6601-2165
@@ -169,63 +170,120 @@ enums:
     instantiates:
     - valuesets_meta:ValueSetEnumDefinition
     permissible_values:
-      REE_LA:
-        title: REE_LA
-        description: Lanthanum
-      REE_CE:
-        title: REE_CE
-        description: Cerium
-      REE_PR:
-        title: REE_PR
-        description: Praseodymium
-      REE_ND:
-        title: REE_ND
-        description: Neodymium
-      REE_PM:
-        title: REE_PM
-        description: Promethium
-      REE_SM:
-        title: REE_SM
-        description: Samarium
-      REE_EU:
-        title: REE_EU
-        description: Europium
-      REE_GD:
-        title: REE_GD
-        description: Gadolinium
-      REE_TB:
-        title: REE_TB
-        description: Terbium
-      REE_DY:
-        title: REE_DY
-        description: Dysprosium
-      REE_HO:
-        title: REE_HO
-        description: Holmium
-      REE_ER:
-        title: REE_ER
-        description: Erbium
-      REE_TM:
-        title: REE_TM
-        description: Thulium
-      REE_YB:
-        title: REE_YB
-        description: Ytterbium
-      REE_LU:
-        title: REE_LU
-        description: Lutetium
+      LA:
+        title: Lanthanum
+        aliases:
+        - lanthanum atom
+        description: Light rare earth element (atomic number 57) used in catalysts, optics, and battery electrodes
+        meaning: CHEBI:33336
+      CE:
+        title: Cerium
+        aliases:
+        - cerium
+        description: Light rare earth element (atomic number 58) used in catalytic converters, glass polishing, and metallurgy
+        meaning: CHEBI:33369
+      PR:
+        title: Praseodymium
+        aliases:
+        - praseodymium atom
+        description: Light rare earth element (atomic number 59) used in magnets, lasers, and aircraft engines
+        meaning: CHEBI:49828
+      ND:
+        title: Neodymium
+        aliases:
+        - neodymium atom
+        description: Light rare earth element (atomic number 60) essential for high-strength permanent magnets in wind turbines and EVs
+        meaning: CHEBI:33372
+      PM:
+        title: Promethium
+        aliases:
+        - promethium atom
+        description: Radioactive rare earth element (atomic number 61) used in nuclear batteries and luminous paint
+        meaning: CHEBI:33373
+      SM:
+        title: Samarium
+        aliases:
+        - samarium atom
+        description: Light rare earth element (atomic number 62) used in samarium-cobalt magnets and cancer treatment
+        meaning: CHEBI:33374
+      EU:
+        title: Europium
+        aliases:
+        - europium atom
+        description: Rare earth element (atomic number 63) used in phosphors for displays and fluorescent lighting
+        meaning: CHEBI:32999
+      GD:
+        title: Gadolinium
+        aliases:
+        - gadolinium atom
+        description: Heavy rare earth element (atomic number 64) used in MRI contrast agents and nuclear reactor control rods
+        meaning: CHEBI:33375
+      TB:
+        title: Terbium
+        aliases:
+        - terbium atom
+        description: Heavy rare earth element (atomic number 65) used in solid-state devices and green phosphors
+        meaning: CHEBI:33376
+      DY:
+        title: Dysprosium
+        aliases:
+        - dysprosium atom
+        description: Heavy rare earth element (atomic number 66) critical for high-temperature permanent magnets
+        meaning: CHEBI:33377
+      HO:
+        title: Holmium
+        aliases:
+        - holmium atom
+        description: Heavy rare earth element (atomic number 67) used in lasers and magnetic flux concentrators
+        meaning: CHEBI:49648
+      ER:
+        title: Erbium
+        aliases:
+        - erbium
+        description: Heavy rare earth element (atomic number 68) used in fiber optic amplifiers and lasers
+        meaning: CHEBI:33379
+      TM:
+        title: Thulium
+        aliases:
+        - thulium atom
+        description: Heavy rare earth element (atomic number 69) used in portable X-ray devices and lasers
+        meaning: CHEBI:33380
+      YB:
+        title: Ytterbium
+        aliases:
+        - ytterbium
+        description: Heavy rare earth element (atomic number 70) used in metallurgy, lasers, and atomic clocks
+        meaning: CHEBI:33381
+      LU:
+        title: Lutetium
+        aliases:
+        - lutetium atom
+        description: Heavy rare earth element (atomic number 71) used in PET scan detectors and cancer treatment
+        meaning: CHEBI:33382
       SC:
-        title: SC
-        description: Scandium
+        title: Scandium
+        aliases:
+        - scandium atom
+        description: Transition metal (atomic number 21) used in aluminum alloys for aerospace and sports equipment
+        meaning: CHEBI:33330
       CO:
-        title: CO
-        description: Cobalt
+        title: Cobalt
+        aliases:
+        - cobalt atom
+        description: Transition metal (atomic number 27) essential for lithium-ion battery cathodes and superalloys
+        meaning: CHEBI:27638
       NI:
-        title: NI
-        description: Nickel
+        title: Nickel
+        aliases:
+        - nickel atom
+        description: Transition metal (atomic number 28) used in stainless steel, batteries, and electroplating
+        meaning: CHEBI:28112
       LI:
-        title: LI
-        description: Lithium
+        title: Lithium
+        aliases:
+        - lithium atom
+        description: Alkali metal (atomic number 3) essential for lithium-ion batteries and energy storage systems
+        meaning: CHEBI:30145
   SensorWhileDrillingFeature:
     title: Sensor While Drilling Feature
     description: 'Measurement while drilling (MWD) and logging while drilling (LWD) features for orebody ML and geosteering
diff --git a/src/valuesets/schema/physics/radiation.yaml b/src/valuesets/schema/physics/radiation.yaml
index 179cd8e0..16cd410e 100644
--- a/src/valuesets/schema/physics/radiation.yaml
+++ b/src/valuesets/schema/physics/radiation.yaml
@@ -3,7 +3,7 @@ title: Radiation Types Value Sets
 description: >-
   Value sets for radiation types based on the Environment Ontology (ENVO),
   including electromagnetic radiation, ionizing radiation, and acoustic radiation.
-id: https://w3id.org/linkml/valuesets/physics/radiation
+id: https://w3id.org/valuesets/physics/radiation
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/provenance/evidence.yaml b/src/valuesets/schema/provenance/evidence.yaml
index 7a5029d4..ed1b4682 100644
--- a/src/valuesets/schema/provenance/evidence.yaml
+++ b/src/valuesets/schema/provenance/evidence.yaml
@@ -3,7 +3,7 @@ title: Evidence and Provenance Value Sets
 description: >-
   Value sets for evidence types and provenance information, based on the
   Evidence and Conclusion Ontology (ECO).
-id: https://w3id.org/linkml/valuesets/provenance/evidence
+id: https://w3id.org/valuesets/provenance/evidence
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/publishing/arxiv_categories.yaml b/src/valuesets/schema/publishing/arxiv_categories.yaml
index bc717faf..3f4ed5bd 100644
--- a/src/valuesets/schema/publishing/arxiv_categories.yaml
+++ b/src/valuesets/schema/publishing/arxiv_categories.yaml
@@ -3,7 +3,7 @@ title: arXiv Subject Categories
 description: >-
   Value sets for arXiv preprint subject categories and taxonomy.
   Based on the official arXiv category taxonomy.
-id: https://w3id.org/linkml/valuesets/publishing/arxiv_categories
+id: https://w3id.org/valuesets/publishing/arxiv_categories
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/publishing/osti_record.yaml b/src/valuesets/schema/publishing/osti_record.yaml
index eb275a05..c6c64dff 100644
--- a/src/valuesets/schema/publishing/osti_record.yaml
+++ b/src/valuesets/schema/publishing/osti_record.yaml
@@ -3,7 +3,7 @@ title: OSTI Record Metadata Value Sets
 description: |
   Value sets derived from the OSTI E-Link 2 record schema for
   bibliographic and submission metadata.
-id: https://w3id.org/linkml/valuesets/publishing/osti_record
+id: https://w3id.org/valuesets/publishing/osti_record
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/social/person_status.yaml b/src/valuesets/schema/social/person_status.yaml
index f84a4954..64631c67 100644
--- a/src/valuesets/schema/social/person_status.yaml
+++ b/src/valuesets/schema/social/person_status.yaml
@@ -1,5 +1,5 @@
 name: person_status
-id: https://w3id.org/linkml/valuesets/social/person_status
+id: https://w3id.org/valuesets/social/person_status
 prefixes:
   PATO: http://purl.obolibrary.org/obo/PATO_
   # linkml_common: https://w3id.org/linkml-common/
diff --git a/src/valuesets/schema/spatial/spatial_qualifiers.yaml b/src/valuesets/schema/spatial/spatial_qualifiers.yaml
index f35327a9..4dc7772d 100644
--- a/src/valuesets/schema/spatial/spatial_qualifiers.yaml
+++ b/src/valuesets/schema/spatial/spatial_qualifiers.yaml
@@ -3,7 +3,7 @@ title: Spatial Qualifier Value Sets
 description: 'Value sets for spatial qualifiers, directions, and anatomical positions,
 
   including both simple directional terms and biological spatial terminology'
-id: https://w3id.org/linkml/valuesets/spatial/spatial_qualifiers
+id: https://w3id.org/valuesets/spatial/spatial_qualifiers
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/statistics/prediction_outcomes.yaml b/src/valuesets/schema/statistics/prediction_outcomes.yaml
index 6c215d84..30282347 100644
--- a/src/valuesets/schema/statistics/prediction_outcomes.yaml
+++ b/src/valuesets/schema/statistics/prediction_outcomes.yaml
@@ -1,5 +1,5 @@
 name: prediction_outcomes
-id: https://w3id.org/linkml/valuesets/statistics/prediction_outcomes
+id: https://w3id.org/valuesets/statistics/prediction_outcomes
 prefixes:
   # linkml_common: https://w3id.org/linkml-common/
   valuesets: https://w3id.org/valuesets/
diff --git a/src/valuesets/schema/time/temporal.yaml b/src/valuesets/schema/time/temporal.yaml
index 0495da10..7dcae6a8 100644
--- a/src/valuesets/schema/time/temporal.yaml
+++ b/src/valuesets/schema/time/temporal.yaml
@@ -1,7 +1,7 @@
 name: temporal
 title: Temporal and Time-Related Value Sets
 description: Value sets for temporal concepts including days, months, time periods, and durations
-id: https://w3id.org/linkml/valuesets/time/temporal
+id: https://w3id.org/valuesets/time/temporal
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/types.yaml b/src/valuesets/schema/types.yaml
index 56a2c5a8..30f0b399 100644
--- a/src/valuesets/schema/types.yaml
+++ b/src/valuesets/schema/types.yaml
@@ -1,7 +1,7 @@
 name: types
 title: Common Type Definitions
 description: Common type definitions for value sets
-id: https://w3id.org/linkml/valuesets/types
+id: https://w3id.org/valuesets/types
 imports:
 - linkml:types
 prefixes:
diff --git a/src/valuesets/schema/valuesets.yaml b/src/valuesets/schema/valuesets.yaml
index 4b85314e..05f3776e 100644
--- a/src/valuesets/schema/valuesets.yaml
+++ b/src/valuesets/schema/valuesets.yaml
@@ -1,7 +1,7 @@
 name: valuesets
 title: valuesets
 description: A collection of commonly used value sets
-id: https://w3id.org/linkml/valuesets
+id: https://w3id.org/valuesets
 imports:
 - core
 - contributor
diff --git a/test_mappings.sssom.tsv b/test_mappings.sssom.tsv
index 7cd1b29f..cee22096 100644
--- a/test_mappings.sssom.tsv
+++ b/test_mappings.sssom.tsv
@@ -6,7 +6,7 @@
 #  sssom: "https://w3id.org/sssom/"
 #  dcterms: "http://purl.org/dc/terms/"
 #
-#mapping_set_id: https://w3id.org/linkml/valuesets/mappings
+#mapping_set_id: https://w3id.org/valuesets/mappings
 #mapping_set_version: 2025-09-15
 #license: https://creativecommons.org/publicdomain/zero/1.0/
 #creator_id: https://github.com/linkml/linkml-valuesets