0.99.0

Author: junjunlab

.Rbuildignore

@@ -1,3 +1,6 @@
 ^riboTransVis_0\.0\.1\.Rproj$
 ^\.Rproj\.user$
 ^LICENSE\.md$
+^\.github$
+^.*\.Rproj$
+^\.Rproj\.user$

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: riboTransVis
 Title: Visualize Transcript-Specific Ribosome Profiling and RNA-Seq Data
-Version: 0.0.7
+Version: 0.99.0
 Author: Jun Zhang
 Maintainer: Jun Zhang <3219030654@stu.cpu.edu.cn>
 Description: The `riboTransVis` package provides tools for creating transcript-level analysis and 
@@ -59,6 +59,11 @@ Suggests:
     Logolas,
     ggrepel,
     tidyr
+Remotes:
+    smithlabcode/riborex,
+    kkdey/Logolas
+biocViews: DESeq2,rtracklayer,Rsamtools,GenomicFeatures,GenomicRanges,Biostrings,IRanges,
+           clusterProfiler,GenomeInfoDb,txdbmaker,S4Vectors
 VignetteBuilder: knitr
 Depends: 
     methods

R/RcppExports.R

@@ -2,6 +2,6 @@
 # Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
 
 boot_stat <- function(mat, boot_indices, method) {
-    .Call('_riboTransVis_boot_stat', PACKAGE = 'riboTransVis', mat, boot_indices, method)
+    .Call(`_riboTransVis_boot_stat`, mat, boot_indices, method)
 }
 

R/riboTransVis-package.R

@@ -1,14 +1,8 @@
 #' @importFrom utils packageDescription
 .onAttach <- function(libname, pkgname) {
   pkgVersion <- packageDescription(pkgname, fields = "Version")
-  if (requireNamespace("cli", quietly = TRUE)) {
-    start_up_mg <- cli::cat_boxx("Welcome to use riboTransVis package for Ribo-seq analysis.",
-                                 col = "#8B1874")
-  } else {
-    warning("Package 'cli' is needed for this function to work.")
-  }
 
-  packageStartupMessage(start_up_mg)
+  packageStartupMessage("Welcome to use riboTransVis for Ribo-seq analysis.")
   packageStartupMessage(paste("The version of riboTransVis:",
                               pkgVersion,
                               "\nAny advice or suggestions please contact with me: 3219030654@stu.cpu.edu.cn.",