metadata/examples/brainExample1.json at d5c266b6badcc5f07ac6b43c79e3dab1c1358b2f · isamplesorg/metadata · GitHub

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{
    "$schema": "../src/schemas/iSamplesSchemaCore1.0.json",
    "@id": "https://isamples.org/metadata/4327q543jh",
    "@context": "https://isamples.org/metadata",
    "@type": "schema:DigitalDocument",
    "dct:conformsTo": "https://isamples.org/metadata",
    "registrant": {
        "name": "name",
        "affiliation": "affiliation",
        "contact_information": "contact_information",
        "identifier": "identifier",
        "role": "role"
    },
    "about": {
        "@id":"xxx:metadataabout/NYBB-MS1",
        "@type":"schema:Thing",
        "sample_identifier": "NYBB-MS1",
        "label": "Brain, Spinal Cord from Male adult",
        "description": "Brain and spinal cord tissue from male adult, age 65 at death, affected by multiple sclerosis",
        "alternate_identifiers": [],
        "produced_by": {
            "identifier": "identifier",
            "label": "post-mortem analysis",
            "description": "description",
            "has_feature_of_interest": "Human Body",
            "project": "Brain inventory",
            "responsibility": [
                {
                    "name": "Dr. Who did the dissection",
                    "affiliation": "affiliation",
                    "contact_information": "contact_information",
                    "identifier": "identifier",
                    "role": "role"
                }
            ],
            "result_time": "2020-09-24",
            "sampling_site": {
                "description": "Post mortem dissection, St. Mary's hospital, Tucson, AZ",
                "label": "Post mortem dissection, patient MYBB-MS1",
                "place_name": ["St. Mary's Hospital, Tucson, AZ"]
            },
            "authorized_by": ["appropriate documentation authorizing collection of body parts for research"]
        },
        "sampling_purpose": "pathology analysis",
        "has_context_category": [
            {
                "label": "Human Body",
                "identifier": "http://example.com/resource/humanbody/brain",
                "scheme_name": "scheme_name"
            },
            {
                "label": "Biological entity",
                "identifier": "https://w3id.org/isample/vocabulary/sampledfeature/biologicalentity",
                "scheme_name": "iSamples Sampled Feature Type vocabulary"
            }
        ],
        "has_material_category": [
            {
                "label": "Organic material",
                "identifier": "https://w3id.org/isample/vocabulary/material/organicmaterial",
                "scheme_name": "iSamples Materials Vocabulary"
            }
        ],
        "has_sample_object_type": [
            {
                "label": "Organism part",
                "identifier": "https://w3id.org/isample/vocabulary/materialsampleobjecttype/organismpart",
                "scheme_name": "iSamples Material Sample Object Type Vocabulary"
            },
            {
                "label": "Human brain",
                "identifier": "\t\nhttp://purl.org/sig/ont/fma/fma50801",
                "scheme_name": "Foundational Model of Anatomy"
            },
            {
                "label": "Human spinal cord",
                "identifier": "http://purl.org/sig/ont/fma/fma7647",
                "scheme_name": "Foundational Model of Anatomy"
            }
        ],
        "keywords": [
            {
                "keyword": "brain",
                "keyword_uri": "keyword_uri",
                "scheme_name": "scheme_name",
                "scheme_uri": "scheme_uri"
            },
            {
                "keyword": "spinal cord"
            },
            {
                "keyword": "Multiple Sclerosis"
            }
        ],
        "related_resource": [
            {
                "description": "Tissue thin section from NYBB_MS1, BA9",
                "label": "SBB1.3",
                "relationship": "Child sample",
                "target": "http://medsamples.org/research/nybbms1/sbb1.3"
            },
            {
                "description": "many other child samples...."
            }
        ],
        "complies_with": ["links or descriptions of protocols for collection and use of human body parts for research"],
        "curation": {
            "access_constraints": ["access_constraints0"],
            "curation_location": "curation_location",
            "description": "How and where is this tissue material preserverd; who to contact about access to sample?",
            "label": "label",
            "responsibility": [
                {
                    "name": "name",
                    "affiliation": "affiliation",
                    "contact_information": "contact_information",
                    "identifier": "identifier",
                    "role": "role"
                }
            ]
        }
    }
}