Ruff is complaining about various things:
- D417 Missing argument description in the docstring for
set_spotfilter: filter_key
- D401 First line of docstring should be in imperative mood: "Sets a TrackMate spot filter with specified filter key and values."
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def set_spotfilter(settings, filter_key, filter_value): |
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"""Sets a TrackMate spot filter with specified filter key and values. |
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Parameters |
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---------- |
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settings : fiji.plugin.trackmate.Settings |
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Dictionary containing all the settings to use for TrackMate. |
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filter_name : str |
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The name of the filter to be applied. You must use the keys of the features, not their name. |
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Here is the table of the feature keys and names for the spot features: |
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https://imagej.net/plugins/trackmate/scripting/trackmate-detectors-trackers-keys |
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filter_value : list |
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A list containing two values for the filter. The first value is |
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applied as an above-threshold filter, and the second as a below-threshold filter. |
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Returns |
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------- |
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Settings |
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The modified TrackMate settings dict with added spot filters |
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Example |
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------- |
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>>> # Set an above-threshold filter value for spot "QUALITY" without a below-threshold value |
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>>> tm_settings = set_trackmate_spotfilter(tm_settings, 'QUALITY', [120, None]) |
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""" |
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settings.addAllAnalyzers() |
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if filter_value[0] != None: |
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filter_low = FeatureFilter(filter_key, filter_value[0], True) |
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settings.addSpotFilter(filter_low) |
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if filter_value[1] != None: |
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filter_high = FeatureFilter(filter_key, filter_value[1], False) |
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settings.addSpotFilter(filter_high) |
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return settings |
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Ruff is complaining about various things:
set_spotfilter:filter_keypython-imcflibs/src/imcflibs/imagej/trackmate.py
Lines 238 to 274 in 6261182