bpRNA/bpRNA_PDB_650.st at master · hendrixlab/bpRNA · GitHub

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#Name: bpRNA_PDB_650
#Length:  71
#PageNumber: 5
#Warning: Structure contains linked PK-segments of same sizes 1 and 1. Using PK brackets for the more 5' segment
GGACACUGAUGAUCGCGUGGAUAUGGCACGCAUUGAAUUGUUGGACACCGUAAAUGUCCUAACACGUGUCC
((((((.([({((.(((((..<<.<<))))))(.A.).]}..(((((>>()>>.))))).))a).))))))
SSSSSSISISBSSBSSSSSHHHHHHHSSSSSSSHHHSMMMMMSSSSSIISSIIISSSSSMSSISISSSSSS
NNNNNNNNKNKNNNNNNNNNNKKNKKNNNNNNNNKNNNKKNNNNNNNKKNNKKNNNNNNNNNKNNNNNNNN
S1 1..6 "GGACAC" 66..71 "GUGUCC"
S2 8..8 "G" 64..64 "A"
S3 10..10 "U" 62..62 "A"
S4 12..12 "A" 61..61 "A"
S5 13..13 "U" 32..32 "A"
S6 15..19 "GCGUG" 27..31 "CACGC"
S7 33..33 "U" 37..37 "A"
S8 43..47 "GGACA" 55..59 "UGUCC"
S9 50..51 "GU" 50..51 "GU"
H1 20..26 "GAUAUGG" (19,27) G:C PK{3,4}
H2 34..36 "UGA" (33,37) U:A PK{5}
H3 51..50 "" (50,51) G:U
B1 11..11 "G" (10,62) U:A (61,12) A:A PK{2}
B2 14..14 "C" (13,32) U:A (31,15) C:G
I1.1 7..7 "U" (6,66) C:G
I1.2 65..65 "C" (64,8) A:G
I2.1 9..9 "A" (8,64) G:A PK{1}
I2.2 63..63 "C" (62,10) A:U PK{5}
I3.1 48..49 "CC" (47,55) A:U PK{4}
I3.2 52..54 "AAA" (51,50) U:G PK{3}
M1.1 13..12 "" (12,61) A:A (32,13) A:U
M1.2 33..32 "" (32,13) A:U (37,33) A:U
M1.3 38..42 "UUGUU" (37,33) A:U (59,43) C:G PK{1,2}
M1.4 60..60 "U" (59,43) C:G (12,61) A:A
PK1 1bp 9..9 39..39 I2.1 9..9 M1.3 38..42
PK2 1bp 11..11 40..40 B1 11..11 M1.3 38..42
PK3 2bp 22..23 52..53 H1 20..26 I3.2 52..54
PK4 2bp 25..26 48..49 H1 20..26 I3.1 48..49
PK5 1bp 35..35 63..63 H2 34..36 I2.2 63..63
PK1.1 9 A 39 U
PK2.1 11 G 40 G
PK3.1 22 U 53 A
PK3.2 23 A 52 A
PK4.1 25 G 49 C
PK4.2 26 G 48 C
PK5.1 35 G 63 C
NCBP1 12 A 61 A S4
NCBP2 8 G 64 A S2
NCBP3 11 G 40 G PK2.1
NCBP4 23 A 52 A PK3.2
segment1 9bp 1..12 GGACACUGAUGA 61..71 AACACGUGUCC
segment2 6bp 13..19 UCGCGUG 27..32 CACGCA
segment3 1bp 33..33 U 37..37 A
segment4 6bp 43..50 GGACACCG 51..59 UAAAUGUCC