but_usage.json

[
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:04:39.781Z",
    "command": "but --help 2>&1 | head -30",
    "but_subcommand": "--help",
    "description": "Check gitbutler CLI usage",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:04:45.010Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check gitbutler workspace status",
    "output": "Last fetch was 18m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   xm M CLAUDE.md \n\u250a\n\u2534 66b7ec9 [origin/main] 2026-02-23 feat: add Azure Key Vault provider and r\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:04:57.910Z",
    "command": "but branch new docs/co-author-attribution",
    "but_subcommand": "branch",
    "description": "Create a new branch for this change",
    "output": "\u2713 Created branch docs/co-author-attribution",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:05:24.507Z",
    "command": "but commit -m \"$(cat <<'EOF'\ndocs: add co-author attribution instructions for external contributors\n\nAdd instructions to CLAUDE.md's Source Control & Pull Requests section\nthat encode the co-author policy from CONTRIBUTING.md. When a PR fixes\na GitHub issue filed by an external contributor (not a repo collaborator),\nthe commit should include a Co-authored-by trailer crediting them.\n\nThe instructions tell Claude to check repo collaborators via the GitHub\nAPI to distinguish team members from external contributors, look up the\ncontributor's name, and use their GitHub noreply email as a fallback.\n\nThis ensures we honor the attribution promise in CONTRIBUTING.md\nautomatically as part of the normal PR workflow.\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit with detailed message",
    "output": "\u2713 Created commit a151e8a on branch docs/co-author-attribution",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:06:46.626Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push the branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:45:48.058Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check workspace status",
    "output": "Last fetch was 40m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   pt M .claude/skills/swamp-extension-model/references/examples.md \n\u250a\n\u2534 9a46220 [origin/main] 2026-02-23 docs: add co-author attribution instruct\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:45:55.057Z",
    "command": "but branch new docs/aws-preflight-check-example && but commit -m \"$(cat <<'EOF'\ndocs: add AWS pre-flight credential check example to extension model skill\n\nAdd a new example showing how to build an AWS model with pre-flight\ncredential validation using sts get-caller-identity. Includes patterns\nfor optional awsProfile global argument, centralised AWS CLI helper,\nand actionable error messages with aws sso login hints.\n\nThis documents the recommended approach for handling AWS SSO/profile\nauth in extension models, as discussed in #371.\nEOF\n)\"",
    "but_subcommand": "branch",
    "description": "Create branch and commit the skill example",
    "output": "\u2713 Created branch docs/aws-preflight-check-example\n\u2713 Created commit 3484c4c on branch docs/aws-preflight-check-example",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:45:58.519Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:47:38.555Z",
    "command": "but commit --amend -m \"$(cat <<'EOF'\ndocs: add AWS pre-flight credential check example to extension model skill\n\nAdd a new example showing how to build an AWS model with pre-flight\ncredential validation using sts get-caller-identity. Includes patterns\nfor optional awsProfile global argument, centralised AWS CLI helper,\nand actionable error messages with aws sso login hints.\n\nThis documents the recommended approach for handling AWS SSO/profile\nauth in extension models, as discussed in #371.\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Amend commit with formatted changes",
    "output": "Exit code 2\nerror: unexpected argument '--amend' found\n\n  tip: to pass '--amend' as a value, use '-- --amend'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '--amend' found\n\n  tip: to pass '--amend' as a value, use '-- --amend'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:47:42.427Z",
    "command": "but commit --help 2>&1 | head -30",
    "but_subcommand": "commit",
    "description": "Check but commit options",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:47:46.551Z",
    "command": "but commit --help 2>&1 | grep -i amend",
    "but_subcommand": "commit",
    "description": "Search for amend option in but commit",
    "output": "commit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:47:49.844Z",
    "command": "but absorb --help 2>&1 | head -20",
    "but_subcommand": "absorb",
    "description": "Check but absorb usage",
    "output": "Amends changes into the appropriate commits where they belong.\n\nThe semantic for finding \"the appropriate commit\" is as follows:\n\n- If a change has a dependency to a particular commit, it will be amended into that particular\ncommit\n- If a change is staged to a particular lane (branch), it will be amended into a commit there\n- If there are no commits in this branch, a new commit is created\n- Changes are amended into the topmost commit of the leftmost (first) lane (branch)\n\nOptionally an identifier to an Uncommitted File or a Branch (stack) may be provided.\n\n- If an Uncommitted File id is provided, absorb will be performed for just that file\n- If a Branch (stack) id is provided, absorb will be performed for all changes staged to that stack\n- If no source is provided, absorb is performed for all uncommitted changes\n\nIf `--dry-run` is specified, no changes will be made; instead, the absorption plan\n(what changes would be absorbed by which commits) will be shown.\n\nIf `--new` is specified, new commits will be created for absorbed changes",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:47:59.281Z",
    "command": "but absorb",
    "but_subcommand": "absorb",
    "description": "Absorb formatting changes into the existing commit",
    "output": "Initiated a background sync...\nFound 1 changed file to absorb:\n\nAbsorbed to commit: 3484c4c docs: add AWS pre-flight credential check example to extension model skill\n  (files locked to commit due to hunk range overlap)\n    .claude/skills/swamp-extension-model/references/examples.md @620,8 +620,7\n    .claude/skills/swamp-extension-model/references/examples.md @632,13 +631,13\n\n\nHint: you can run `but undo` to undo these changes",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:48:05.487Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Force push the amended commit",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:57:29.370Z",
    "command": "but branch new docs/skill-creator-guideline && but commit -m \"$(cat <<'EOF'\ndocs: require skill-creator guidelines for swamp skill maintenance\n\nAdd a note to CLAUDE.md directing contributors to follow the\nskill-creator skill when creating or updating swamp-* skills.\nThis prevents skills from drifting in structure and quality over\ntime as different authors make changes without a shared standard.\nEOF\n)\"",
    "but_subcommand": "branch",
    "description": "Create branch and commit",
    "output": "Exit code 1\n\u2713 Created branch docs/skill-creator-guideline\nError: Multiple candidate stacks found\n\n\u2713 Created branch docs/skill-creator-guideline\nError: Multiple candidate stacks found",
    "is_error": true
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:57:33.605Z",
    "command": "but commit docs/skill-creator-guideline -m \"$(cat <<'EOF'\ndocs: require skill-creator guidelines for swamp skill maintenance\n\nAdd a note to CLAUDE.md directing contributors to follow the\nskill-creator skill when creating or updating swamp-* skills.\nThis prevents skills from drifting in structure and quality over\ntime as different authors make changes without a shared standard.\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit to the specific branch",
    "output": "\u2713 Created commit 86ad249 on branch docs/skill-creator-guideline",
    "is_error": false
  },
  {
    "session_id": "7a49fb95-6fe9-45bf-ad67-6331de142dc6",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T14:57:37.012Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push the branch",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:41:40.922Z",
    "command": "but --help 2>&1 | head -40",
    "but_subcommand": "--help",
    "description": "Check gitbutler CLI help",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.\n  pull         Updates all applied branches to be up to date with the target b\u2026\n  pr           Commands for creating and managing reviews on a forge, e.g. Git\u2026\n\nEditing Commits:\n  rub          Combines two entities together to perform an operation like ame\u2026\n  absorb       Amends changes into the appropriate commits where they belong.\n  reword       Edit the commit message of the specified commit.\n  uncommit     Uncommit changes from a commit or file-in-commit to the unstage\u2026\n  amend        Amend a file change into a specific commit and rebases any depe\u2026\n  squash       Squash commits together.",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:10.756Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check gitbutler workspace state",
    "output": "Last fetch was 5h ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   ns M .claude/skills/swamp-workflow/references/data-chaining.md \n\u250a   nn M .claude/skills/swamp-workflow/references/expressions-and-foreach.md \n\u250a   vv M design/expressions.md \n\u250a   ls A design/extension-workflows.md \n\u250a   wp M design/workflow.md \n\u250a   pq A integration/vary_test.ts \n\u250a   uw A src/domain/data/composite_name.ts \n\u250a   zt A src/domain/data/composite_name_test.ts \n\u250a   wx M src/domain/data/mod.ts \n\u250a   vk M src/domain/models/data_output_override.ts \n\u250a   wk M src/domain/models/data_writer.ts \n\u250a   lx M src/domain/models/data_writer_test.ts \n\u250a   qk M src/domain/models/model.ts \n\u250a   zy M src/domain/workflows/execution_service.ts \n\u250a   pl M src/domain/workflows/step.ts \n\u250a   qx M src/infrastructure/cel/cel_evaluator.ts \n\u250a   lu M src/infrastructure/cel/cel_evaluator_test.ts \n\u250a\n\u2534 8b1ecf2 [origin/main] 2026-02-23 fix: improve CLI error messages for unkn\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:11.431Z",
    "command": "but branch --help 2>&1 | head -30",
    "but_subcommand": "branch",
    "description": "Check branch subcommand help",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:13.661Z",
    "command": "but commit --help 2>&1 | head -40",
    "but_subcommand": "commit",
    "description": "Check commit subcommand help",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:14.197Z",
    "command": "but pr --help 2>&1 | head -30",
    "but_subcommand": "pr",
    "description": "Check PR subcommand help",
    "output": "Commands for creating and managing reviews on a forge, e.g. GitHub PRs or GitLab MRs.\n\nIf you are authenticated with a forge using but config forge auth, you can use the but pr or but mr\ncommands to create pull requests (or merge requests) on the remote repository for your branches.\n\nRunning but pr without a subcommand defaults to but pr new, which will prompt you to select a branch\nto create a PR for.\n\nUsage: but pr [OPTIONS] [COMMAND]\n\nCommands:\n  new       Create a new review for a branch. If no branch is specified, you will be prompted to\n            select one. If there is only one branch without a review, you will be asked to confirm\n  template  Configure the template to use for review descriptions. This will list all available\n            templates found in the repository and allow you to select one\n\nOptions:\n  -d, --draft\n          Whether to create reviews as a draft\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:35.923Z",
    "command": "but stage --help 2>&1 | head -30",
    "but_subcommand": "stage",
    "description": "Check stage subcommand help",
    "output": "Stages a file or hunk to a specific branch.\n\nWithout arguments, opens an interactive TUI for selecting files and hunks to stage.\nWith arguments, stages the specified file or hunk to the given branch.\n\nUsage:\n  `but stage`                             (interactive TUI selector)\n  `but stage --branch <branch>`           (interactive, specific branch)\n  `but stage <file-or-hunk> <branch>`     (direct staging)\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nArguments:\n  [FILE_OR_HUNK]\n          File or hunk ID to stage\n\n  [BRANCH_POS]\n          Branch to stage to (positional)\n\nOptions:\n  -b, --branch <BRANCH>\n          Branch to stage to (for interactive mode)\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:36.472Z",
    "command": "but pr new --help 2>&1",
    "but_subcommand": "pr",
    "description": "Check PR new subcommand help",
    "output": "Stages a file or hunk to a specific branch.\n\nWithout arguments, opens an interactive TUI for selecting files and hunks to stage.\nWith arguments, stages the specified file or hunk to the given branch.\n\nUsage:\n  `but stage`                             (interactive TUI selector)\n  `but stage --branch <branch>`           (interactive, specific branch)\n  `but stage <file-or-hunk> <branch>`     (direct staging)\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nArguments:\n  [FILE_OR_HUNK]\n          File or hunk ID to stage\n\n  [BRANCH_POS]\n          Branch to stage to (positional)\n\nOptions:\n  -b, --branch <BRANCH>\n          Branch to stage to (for interactive mode)\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:43.649Z",
    "command": "but branch new feat/vary-dimensions 2>&1",
    "but_subcommand": "branch",
    "description": "Create new branch for vary dimensions",
    "output": "\u2713 Created branch feat/vary-dimensions",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:48.866Z",
    "command": "but stage ns feat/vary-dimensions 2>&1 && but stage nn feat/vary-dimensions 2>&1 && but stage vv feat/vary-dimensions 2>&1 && but stage wp feat/vary-dimensions 2>&1 && but stage pq feat/vary-dimensions 2>&1 && but stage uw feat/vary-dimensions 2>&1 && but stage zt feat/vary-dimensions 2>&1 && but stage wx feat/vary-dimensions 2>&1 && but stage vk feat/vary-dimensions 2>&1 && but stage wk feat/vary-dimensions 2>&1 && but stage lx feat/vary-dimensions 2>&1 && but stage qk feat/vary-dimensions 2>&1 && but stage zy feat/vary-dimensions 2>&1 && but stage pl feat/vary-dimensions 2>&1 && but stage qx feat/vary-dimensions 2>&1 && but stage lu feat/vary-dimensions 2>&1",
    "but_subcommand": "stage",
    "description": "Stage all vary-related files to the branch",
    "output": "Exit code 1\n\nFailed to stage. Cannot stage at - it is a branch. Only uncommitted files and hunks can be staged.\n\n\nFailed to stage. Cannot stage at - it is a branch. Only uncommitted files and hunks can be staged.",
    "is_error": true
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:42:54.761Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check status after branch creation",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   nsm M .claude/skills/swamp-workflow/references/data-chaining.md \n\u250a    nn M .claude/skills/swamp-workflow/references/expressions-and-foreach.md \n\u250a    vv M design/expressions.md \n\u250a    ls A design/extension-workflows.md \n\u250a    wp M design/workflow.md \n\u250a    pq A integration/vary_test.ts \n\u250a    uw A src/domain/data/composite_name.ts \n\u250a    zt A src/domain/data/composite_name_test.ts \n\u250a    wx M src/domain/data/mod.ts \n\u250a    vk M src/domain/models/data_output_override.ts \n\u250a    wk M src/domain/models/data_writer.ts \n\u250a    lx M src/domain/models/data_writer_test.ts \n\u250a    qk M src/domain/models/model.ts \n\u250a    zy M src/domain/workflows/execution_service.ts \n\u250a    pl M src/domain/workflows/step.ts \n\u250a    qx M src/infrastructure/cel/cel_evaluator.ts \n\u250a    lu M src/infrastructure/cel/cel_evaluator_test.ts \n\u250a\n\u250a\u256d\u2504at [feat/vary-dimensions] (no commits) \n\u251c\u256f\n\u250a\n\u2534 8b1ecf2 [origin/main] 2026-02-23 fix: improve CLI error messages for unkn\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:43:01.165Z",
    "command": "but stage nsm --branch feat/vary-dimensions 2>&1",
    "but_subcommand": "stage",
    "description": "Stage data-chaining.md",
    "output": "Staged the only hunk in .claude/skills/swamp-workflow/references/data-chaining.md in the unassigned area \u2192 [feat/vary-dimensions].",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:43:22.109Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check status to find remaining unstaged file",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   nnr M .claude/skills/swamp-workflow/references/expressions-and-foreach.md \n\u250a    ls A design/extension-workflows.md \n\u250a\n\u250a  \u256d\u2504j2 [staged to feat/vary-dimensions]\n\u250a  \u2502 nnz M .claude/skills/swamp-workflow/references/data-chaining.md \n\u250a  \u2502  pp M design/expressions.md \n\u250a  \u2502  tl M design/workflow.md \n\u250a  \u2502  so A integration/vary_test.ts \n\u250a  \u2502  py A src/domain/data/composite_name.ts \n\u250a  \u2502 ysu A src/domain/data/composite_name_test.ts \n\u250a  \u2502  vn M src/domain/data/mod.ts \n\u250a  \u2502  sz M src/domain/models/data_output_override.ts \n\u250a  \u2502  lz M src/domain/models/data_writer.ts \n\u250a  \u2502  rz M src/domain/models/data_writer_test.ts \n\u250a  \u2502  ts M src/domain/models/model.ts \n\u250a  \u2502  kl M src/domain/workflows/execution_service.ts \n\u250a  \u2502  un M src/domain/workflows/step.ts \n\u250a  \u2502 zzw M src/infrastructure/cel/cel_evaluator.ts \n\u250a  \u2502 ysx M src/infrastructure/cel/cel_evaluator_test.ts \n\u250a  \u2502\n\u250a\u256d\u2504at [feat/vary-dimensions] (no commits) \n\u251c\u256f\n\u250a\n\u2534 8b1ecf2 [origin/main] 2026-02-23 fix: improve CLI error messages for unkn\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:43:27.307Z",
    "command": "but stage nnr --branch feat/vary-dimensions 2>&1",
    "but_subcommand": "stage",
    "description": "Stage the remaining expressions-and-foreach.md",
    "output": "Staged the only hunk in .claude/skills/swamp-workflow/references/expressions-and-foreach.md in the unassigned area \u2192 [feat/vary-dimensions].",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:44:28.673Z",
    "command": "but commit feat/vary-dimensions --message-file /tmp/vary-commit-msg.md 2>&1",
    "but_subcommand": "commit",
    "description": "Commit staged changes to feat/vary-dimensions",
    "output": "\u2713 Created commit 0df2b73 on branch feat/vary-dimensions",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:44:31.858Z",
    "command": "but push feat/vary-dimensions 2>&1",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:44:37.588Z",
    "command": "but pr new feat/vary-dimensions --file /tmp/vary-commit-msg.md 2>&1",
    "but_subcommand": "pr",
    "description": "Create PR from the commit message file",
    "output": "Exit code 1\nError: Failed to create forge review for branch.\n\nCaused by:\n    No authenticated forge users found.\n    Run 'but config forge auth' to authenticate with GitHub.\n\nError: Failed to create forge review for branch.\n\nCaused by:\n    No authenticated forge users found.\n    Run 'but config forge auth' to authenticate with GitHub.",
    "is_error": true
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:59:00.355Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check current workspace state",
    "output": "Last fetch was 16m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   uw M src/domain/data/composite_name.ts \n\u250a   zt M src/domain/data/composite_name_test.ts \n\u250a   lu M src/infrastructure/cel/cel_evaluator_test.ts \n\u250a\n\u2534 d5dacad [origin/main] 2026-02-23 feat: add vary dimensions for environmen\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:59:04.406Z",
    "command": "but branch new fix/vary-review-feedback 2>&1",
    "but_subcommand": "branch",
    "description": "Create branch for review feedback",
    "output": "\u2713 Created branch fix/vary-review-feedback",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:59:06.550Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Get file IDs for staging",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   uw M src/domain/data/composite_name.ts \n\u250a   zt M src/domain/data/composite_name_test.ts \n\u250a   lu M src/infrastructure/cel/cel_evaluator_test.ts \n\u250a\n\u250a\u256d\u2504fi [fix/vary-review-feedback] (no commits) \n\u251c\u256f\n\u250a\n\u2534 d5dacad [origin/main] 2026-02-23 feat: add vary dimensions for environmen\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T22:59:09.365Z",
    "command": "but stage uw --branch fix/vary-review-feedback 2>&1 && but stage zt --branch fix/vary-review-feedback 2>&1 && but stage lu --branch fix/vary-review-feedback 2>&1",
    "but_subcommand": "stage",
    "description": "Stage all 3 files to the branch",
    "output": "Staged the only hunk in src/domain/data/composite_name.ts in the unassigned area \u2192 [fix/vary-review-feedback].\n\nStaged the only hunk in src/domain/data/composite_name_test.ts in the unassigned area \u2192 [fix/vary-review-feedback].\n\nStaged the only hunk in src/infrastructure/cel/cel_evaluator_test.ts in the unassigned area \u2192 [fix/vary-review-feedback].",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:02:11.831Z",
    "command": "but commit fix/vary-review-feedback --message-file /tmp/vary-followup-msg.md 2>&1",
    "but_subcommand": "commit",
    "description": "Commit the review feedback changes",
    "output": "\u2713 Created commit 819544f on branch fix/vary-review-feedback",
    "is_error": false
  },
  {
    "session_id": "576e99e4-d9ab-47cd-90ce-f23c2f232a7e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:02:14.384Z",
    "command": "but push fix/vary-review-feedback 2>&1",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:36:46.448Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check gitbutler status",
    "output": "Last fetch was 37m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   rn M src/cli/commands/model_method_run.ts \n\u250a   ym M src/domain/expressions/expression_evaluation_service.ts \n\u250a   nu M src/domain/expressions/model_resolver.ts \n\u250a   mt A src/domain/secrets/mod.ts \n\u250a   ot A src/domain/secrets/secret_redactor.ts \n\u250a   ut A src/domain/secrets/secret_redactor_test.ts \n\u250a   zy M src/domain/workflows/execution_service.ts \n\u250a   pn M src/infrastructure/logging/run_file_sink.ts \n\u250a\n\u2534 2287bdf [origin/main] 2026-02-23 fix: harden vary dimensions with path sa\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:16.124Z",
    "command": "but branch new \"redact-vault-secrets-from-logs\" 2>&1",
    "but_subcommand": "branch",
    "description": "Create new gitbutler branch",
    "output": "\u2713 Created branch redact-vault-secrets-from-logs",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:21.437Z",
    "command": "but branch move --ownership 'src/cli/commands/model_method_run.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/expressions/expression_evaluation_service.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/expressions/model_resolver.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/secrets/mod.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/secrets/secret_redactor.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/secrets/secret_redactor_test.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/domain/workflows/execution_service.ts:*' --to redact-vault-secrets-from-logs 2>&1 && \\\nbut branch move --ownership 'src/infrastructure/logging/run_file_sink.ts:*' --to redact-vault-secrets-from-logs 2>&1",
    "but_subcommand": "branch",
    "description": "Move file ownership to the new branch",
    "output": "Exit code 2\nerror: unrecognized subcommand 'move'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unrecognized subcommand 'move'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:24.090Z",
    "command": "but branch --help 2>&1",
    "but_subcommand": "branch",
    "description": "Check gitbutler branch commands",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:26.344Z",
    "command": "but --help 2>&1",
    "but_subcommand": "--help",
    "description": "Check gitbutler top-level commands",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.\n  pull         Updates all applied branches to be up to date with the target b\u2026\n  pr           Commands for creating and managing reviews on a forge, e.g. Git\u2026\n\nEditing Commits:\n  rub          Combines two entities together to perform an operation like ame\u2026\n  absorb       Amends changes into the appropriate commits where they belong.\n  reword       Edit the commit message of the specified commit.\n  uncommit     Uncommit changes from a commit or file-in-commit to the unstage\u2026\n  amend        Amend a file change into a specific commit and rebases any depe\u2026\n  squash       Squash commits together.\n  move         Move a commit to a different location in the stack.\n\nOperation History:\n  oplog        Commands for viewing and managing operation history.\n  undo         Undo the last operation by reverting to the previous snapshot.\n\nOther Commands:\n  setup        Sets up a GitButler project from a git repository in the curren\u2026\n  teardown     Exit GitButler mode and return to normal Git workflow.\n  gui          Open the GitButler GUI for the current project.\n  update       Manage GitButler CLI and app updates.\n  alias        Manage command aliases.\n  config       View and manage GitButler configuration.\n  pick         Cherry-pick a commit from an unapplied branch into an applied v\u2026\n  unapply      Unapply a branch from the workspace.\n  apply        Apply a branch to the workspace.\n  skill        Manage Claude AI skills for GitButler.\n\nTo add command completion, add this to your shell rc: (for example ~/.zshrc)\n  eval \"$(but completions zsh)\"\n\nTo use the GitButler CLI with coding agents (Claude Code hooks, Cursor hooks, MCP), see:\n  https://docs.gitbutler.com/features/ai-integration/ai-overview\n\nOptions:\n  -C, --current-dir <PATH>  Run as if but was started in PATH instead of the cu\u2026\n  -j, --json  Whether to use JSON output format\n  -h, --help  Print help",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:49.277Z",
    "command": "but commit --help 2>&1",
    "but_subcommand": "commit",
    "description": "Check commit command options",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created\n\n  -j, --json\n          Whether to use JSON output format\n\n  -o, --only\n          Only commit staged files, not unstaged files\n\n  -n, --no-hooks\n          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:38:51.836Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check status before committing",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   rn M src/cli/commands/model_method_run.ts \n\u250a   ym M src/domain/expressions/expression_evaluation_service.ts \n\u250a   nu M src/domain/expressions/model_resolver.ts \n\u250a   mt A src/domain/secrets/mod.ts \n\u250a   ot A src/domain/secrets/secret_redactor.ts \n\u250a   ut A src/domain/secrets/secret_redactor_test.ts \n\u250a   zy M src/domain/workflows/execution_service.ts \n\u250a   pn M src/infrastructure/logging/run_file_sink.ts \n\u250a\n\u250a\u256d\u2504ct [redact-vault-secrets-from-logs] (no commits) \n\u251c\u256f\n\u250a\n\u2534 2287bdf [origin/main] 2026-02-23 fix: harden vary dimensions with path sa\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:39:10.209Z",
    "command": "but commit redact-vault-secrets-from-logs --message-file /dev/stdin <<'EOF'\nfix: redact vault secrets from persisted log files (#429)\n\nVault secrets resolved via `vault.get()` CEL expressions were leaking into\nlog files in plaintext, defeating the purpose of vault encryption. This adds\nautomatic redaction at the logging infrastructure layer so secrets are\nreplaced with `***` before being written to disk.\n\n## Approach: log-only redaction\n\nThe original plan called for redacting secrets from both log files and data\nfiles (`.swamp/data/`). During implementation, we identified that data file\nredaction would silently corrupt model output data and break inter-step\nworkflow data flow \u2014 downstream steps reading resource attributes via CEL\nexpressions would receive `***` instead of actual values. It would also\ncause false positives where common strings matching a secret value get\nsilently replaced in unrelated fields.\n\nLog files are audit/debug output where secrets should never appear. Data\nfiles are the model's responsibility and their integrity must be preserved\nfor workflow execution. This narrower scope is the correct fix.\n\n## Implementation\n\n- New `SecretRedactor` class (`src/domain/secrets/`) collects vault secret\n  values and replaces them with `***` in text. Ignores secrets < 3 chars to\n  prevent false positives, sorts longest-first for substring overlap, and\n  auto-adds JSON-escaped variants.\n- `ModelResolver.resolveVaultExpressions()` accepts an optional redactor and\n  calls `addSecret()` after each vault secret is resolved.\n- `ExpressionEvaluationService` threads the redactor through runtime\n  expression resolution methods.\n- `RunFileSink.register()` accepts an optional redactor per log file\n  registration and applies redaction to log lines before writing.\n- CLI entry point (`model_method_run.ts`) creates a `SecretRedactor`, passes\n  it to both `runFileSink.register()` and vault resolution. The shared\n  reference ensures the sink redacts using secrets populated during\n  resolution.\n- Workflow entry point (`execution_service.ts`) creates a `SecretRedactor`\n  per workflow run, threads it through `StepExecutionContext` so each step's\n  vault resolution populates the same redactor used by the workflow log sink.\n\nCloses #429\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF",
    "but_subcommand": "commit",
    "description": "Commit all changes to the branch",
    "output": "\u2713 Created commit 3f210dc on branch redact-vault-secrets-from-logs",
    "is_error": false
  },
  {
    "session_id": "f6ab67dd-35a6-473a-a33b-33b1926a16cc",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-23T23:39:13.188Z",
    "command": "but push redact-vault-secrets-from-logs 2>&1",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:19.018Z",
    "command": "but --help 2>&1 | head -30",
    "but_subcommand": "--help",
    "description": "Check but CLI usage",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:20.963Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check GitButler workspace status",
    "output": "Last fetch was 56m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   vp M src/cli/telemetry_integration.ts \n\u250a   xq M src/cli/telemetry_integration_test.ts \n\u250a\n\u2534 848d01a [origin/main] 2026-02-23 fix: redact vault secrets from persisted\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:23.718Z",
    "command": "but branch new fix-telemetry-boolean-flag-parsing",
    "but_subcommand": "branch",
    "description": "Create new GitButler branch",
    "output": "\u2713 Created branch fix-telemetry-boolean-flag-parsing",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:25.532Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check status after branch creation",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   vp M src/cli/telemetry_integration.ts \n\u250a   xq M src/cli/telemetry_integration_test.ts \n\u250a\n\u250a\u256d\u2504fi [fix-telemetry-boolean-flag-parsing] (no commits) \n\u251c\u256f\n\u250a\n\u2534 848d01a [origin/main] 2026-02-23 fix: redact vault secrets from persisted\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:28.592Z",
    "command": "but stage src/cli/telemetry_integration.ts --branch fix-telemetry-boolean-flag-parsing && but stage src/cli/telemetry_integration_test.ts --branch fix-telemetry-boolean-flag-parsing",
    "but_subcommand": "stage",
    "description": "Stage both files to the branch",
    "output": "Staged all hunks in src/cli/telemetry_integration.ts in the unassigned area \u2192 [fix-telemetry-boolean-flag-parsing].\n\nStaged the only hunk in src/cli/telemetry_integration_test.ts in the unassigned area \u2192 [fix-telemetry-boolean-flag-parsing].",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:51.964Z",
    "command": "but commit -b fix-telemetry-boolean-flag-parsing -m \"$(cat <<'EOF'\nfix: add missing boolean flags to telemetry command extraction\n\nThe `extractCommandInfo` pre-parser uses `isKnownFlag()` to identify\nboolean flags (flags that don't take a value argument). When a boolean\nflag is missing from this list, the parser assumes it takes a value and\nconsumes the next positional argument as that value \u2014 silently\nswallowing the command or subcommand name.\n\nTwo global flags were missing (`--no-color`, `--show-properties`),\ncausing commands like `swamp --no-color model create` to misidentify\n\"model\" as the value of `--no-color` and record a wrong or empty\ncommand in telemetry.\n\nFive per-command boolean flags were also missing (`--check`, `--verify`,\n`--prune`, `--streaming`, `--last-evaluated`), which could cause\npositional argument misclassification after the command/subcommand.\n\nAlso removes stale `--stream` from both `GLOBAL_OPTIONS` and\n`isKnownFlag` \u2014 it is not an actual CLI option.\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit changes with detailed message",
    "output": "Exit code 2\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:54.246Z",
    "command": "but commit --help 2>&1 | head -30",
    "but_subcommand": "commit",
    "description": "Check but commit usage",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:33:56.313Z",
    "command": "but commit --help 2>&1 | tail -20",
    "but_subcommand": "commit",
    "description": "Check but commit options",
    "output": "          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:34:03.566Z",
    "command": "but commit fix-telemetry-boolean-flag-parsing -m \"$(cat <<'EOF'\nfix: add missing boolean flags to telemetry command extraction\n\nThe `extractCommandInfo` pre-parser uses `isKnownFlag()` to identify\nboolean flags (flags that don't take a value argument). When a boolean\nflag is missing from this list, the parser assumes it takes a value and\nconsumes the next positional argument as that value \u2014 silently\nswallowing the command or subcommand name.\n\nTwo global flags were missing (`--no-color`, `--show-properties`),\ncausing commands like `swamp --no-color model create` to misidentify\n\"model\" as the value of `--no-color` and record a wrong or empty\ncommand in telemetry.\n\nFive per-command boolean flags were also missing (`--check`, `--verify`,\n`--prune`, `--streaming`, `--last-evaluated`), which could cause\npositional argument misclassification after the command/subcommand.\n\nAlso removes stale `--stream` from both `GLOBAL_OPTIONS` and\n`isKnownFlag` \u2014 it is not an actual CLI option.\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit changes to the branch",
    "output": "\u2713 Created commit d525f05 on branch fix-telemetry-boolean-flag-parsing",
    "is_error": false
  },
  {
    "session_id": "b0e266cd-accb-4d4c-8b55-4458dc8e520b",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T00:34:05.750Z",
    "command": "but push fix-telemetry-boolean-flag-parsing",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:21.785Z",
    "command": "but --help 2>&1 | head -30",
    "but_subcommand": "--help",
    "description": "Check but CLI usage",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:24.667Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check GitButler workspace status",
    "output": "Last fetch was 34m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   ny M src/domain/repo/swamp_version.ts \n\u250a   pp M src/domain/repo/swamp_version_test.ts \n\u250a\n\u2534 69631cc [origin/main] 2026-02-24 fix: add missing boolean flags to teleme\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:26.705Z",
    "command": "but branch new \"fix/swamp-version-leading-zeros\" 2>&1",
    "but_subcommand": "branch",
    "description": "Create new GitButler branch",
    "output": "\u2713 Created branch fix/swamp-version-leading-zeros",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:29.040Z",
    "command": "but stage --all --branch fix/swamp-version-leading-zeros 2>&1",
    "but_subcommand": "stage",
    "description": "Stage all changes to the branch",
    "output": "Exit code 2\nerror: unexpected argument '--all' found\n\n  tip: to pass '--all' as a value, use '-- --all'\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '--all' found\n\n  tip: to pass '--all' as a value, use '-- --all'\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:42.882Z",
    "command": "but stage --help 2>&1",
    "but_subcommand": "stage",
    "description": "Check stage command usage",
    "output": "Stages a file or hunk to a specific branch.\n\nWithout arguments, opens an interactive TUI for selecting files and hunks to stage.\nWith arguments, stages the specified file or hunk to the given branch.\n\nUsage:\n  `but stage`                             (interactive TUI selector)\n  `but stage --branch <branch>`           (interactive, specific branch)\n  `but stage <file-or-hunk> <branch>`     (direct staging)\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nArguments:\n  [FILE_OR_HUNK]\n          File or hunk ID to stage\n\n  [BRANCH_POS]\n          Branch to stage to (positional)\n\nOptions:\n  -b, --branch <BRANCH>\n          Branch to stage to (for interactive mode)\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:47.725Z",
    "command": "but stage src/domain/repo/swamp_version.ts fix/swamp-version-leading-zeros 2>&1 && but stage src/domain/repo/swamp_version_test.ts fix/swamp-version-leading-zeros 2>&1",
    "but_subcommand": "stage",
    "description": "Stage both modified files to the branch",
    "output": "Staged all hunks in src/domain/repo/swamp_version.ts in the unassigned area \u2192 [fix/swamp-version-leading-zeros].\n\nStaged the only hunk in src/domain/repo/swamp_version_test.ts in the unassigned area \u2192 [fix/swamp-version-leading-zeros].",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:57.210Z",
    "command": "but commit -b fix/swamp-version-leading-zeros -m \"$(cat <<'EOF'\nfix: preserve leading zeros in SwampVersion calver time component\n\nSwampVersion.create() used parseInt() to parse version segments, which\nstrips leading zeros. For builds between midnight and ~09:59:59, the\nHHMMSS time component (e.g. 003901) lost its leading zeros, causing\ntoString() to return \"20260224.3901.0\" instead of \"20260224.003901.0\".\n\nThis broke .swamp.yaml version round-tripping and failed UAT validation.\n\nThe fix stores the original string segments alongside the parsed integer\nvalues, using the raw strings for toString() while keeping integers for\ncompareTo/equals. This preserves exact round-tripping for all version\nformats (both semver and calver).\n\nFixes #439\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit changes with detailed message",
    "output": "Exit code 2\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:07:59.107Z",
    "command": "but commit --help 2>&1",
    "but_subcommand": "commit",
    "description": "Check commit command usage",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created\n\n  -j, --json\n          Whether to use JSON output format\n\n  -o, --only\n          Only commit staged files, not unstaged files\n\n  -n, --no-hooks\n          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:08:05.406Z",
    "command": "but commit fix/swamp-version-leading-zeros -m \"$(cat <<'EOF'\nfix: preserve leading zeros in SwampVersion calver time component\n\nSwampVersion.create() used parseInt() to parse version segments, which\nstrips leading zeros. For builds between midnight and ~09:59:59, the\nHHMMSS time component (e.g. 003901) lost its leading zeros, causing\ntoString() to return \"20260224.3901.0\" instead of \"20260224.003901.0\".\n\nThis broke .swamp.yaml version round-tripping and failed UAT validation.\n\nThe fix stores the original string segments alongside the parsed integer\nvalues, using the raw strings for toString() while keeping integers for\ncompareTo/equals. This preserves exact round-tripping for all version\nformats (both semver and calver).\n\nFixes #439\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit to the branch with message",
    "output": "\u2713 Created commit 083ab04 on branch fix/swamp-version-leading-zeros",
    "is_error": false
  },
  {
    "session_id": "aaad63af-0cce-400c-9480-b8688005026e",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T01:08:07.497Z",
    "command": "but push fix/swamp-version-leading-zeros 2>&1",
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    "timestamp": "2026-02-24T01:08:12.289Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
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    "output": "\u256d\u2504zz [unstaged changes] \n\u250a     no changes\n\u250a\n\u250a\u256d\u2504fi [fix/swamp-version-leading-zeros]  \n\u250a\u25cf   083ab04 fix: preserve leading zeros in SwampVersion calver  \n\u251c\u256f\n\u250a\n\u2534 69631cc [origin/main] 2026-02-24 fix: add missing boolean flags to teleme\n\nHint: run `but help` for all commands",
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    "command": "but status",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "Exit code 1\nError: Setup required: Not currently on a gitbutler/* branch.\n\nError: Setup required: Not currently on a gitbutler/* branch.",
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    "command": "but diff",
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    "command": "but log --oneline -10",
    "but_subcommand": "log",
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    "command": "but status --json",
    "but_subcommand": "status",
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    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"mn\",\n      \"filePath\": \"src/cli/commands/vault_get.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"kx\",\n      \"filePath\": \"src/cli/commands/vault_list_keys.ts\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"8ac4e79455a85bad3db580501fc786ecd0520900\",\n    \"createdAt\": \"2026-02-24T18:32:35+00:00\",\n    \"message\": \"feat: auto-store sensitive output fields in vault before persistence (#446)\\n\\nCloses #433\\nCloses #447\\n\\n## Summary\\n\\n- When upstream APIs return sensitive data (e.g., EC2 `CreateKeyPair`\\nreturns `KeyMaterial`), all fields were previously written as plaintext\\nto `.swamp/.data/`\\n- This change automatically detects fields marked with `{ sensitive:\\ntrue }` in Zod schema metadata and stores their values in the configured\\nvault, replacing the persisted value with a CEL-compatible vault\\nreference expression\\n- Zero impact on existing users \u2014 purely additive, no existing behavior\\nchanges\\n\\n## What users can now do\\n\\n**Mark individual output fields as sensitive in resource output specs:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({\\n      keyId: z.string(),\\n      keyMaterial: z.string().meta({ sensitive: true }),\\n    }),\\n    lifetime: \\\"infinite\\\",\\n    garbageCollection: 10,\\n  },\\n}\\n```\\n\\n**Mark an entire resource spec's output as sensitive:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({ ... }),\\n    sensitiveOutput: true,\\n    vaultName: \\\"my-vault\\\",  // Optional\\n    ...\\n  },\\n}\\n```\\n\\nPersisted files will contain vault references instead of plaintext:\\n```\\n${{ vault.get('vault-name', 'modelType/modelId/methodName/fieldPath') }}\\n```\\n\\n## Plan vs implementation\\n\\n| Area | Plan | Implementation |\\n|------|------|----------------|\\n| **Where sensitiveOutput lives** | `ResourceOutputSpec` (didn't exist\\nat plan time) | `ResourceOutputSpec` (now exists \u2014 per-spec, cleaner\\nthan per-method) |\\n| **Where processing happens** | Modify `createResourceWriter()` |\\nInside `createResourceWriter()` before `JSON.stringify(data)` \u2014\\ntransparent to methods |\\n| **VaultService factory** | `fromConfig()` (sync, reads .swamp.yaml) |\\n`fromRepository()` (already exists on main, async, reads .swamp/vault/)\\n|\\n| **Mutation safety** | Not addressed in plan | `structuredClone()`\\nsnapshot before mutation prevents cross-contamination |\\n| **Nested field handling** | Not addressed | Handled via\\n`setNestedValue()` without creating spurious literal dot-keys |\\n\\nThe divergences were driven by the codebase evolving significantly since\\nthe plan was written (DataWriter/DataHandle architecture,\\nResourceOutputSpec, unified data repository).\\n\\n## Architecture benefits\\n\\n- **Declarative security**: Model authors declare sensitivity in the\\nschema via `.meta()`, not in imperative code. The runtime enforces it\\ninside the DataWriter pipeline.\\n- **Transparent to methods**: Methods call `context.writeResource()` as\\nnormal. Sensitive field processing happens inside the writer \u2014 no\\nchanges needed in method implementations.\\n- **Fail-hard on misconfiguration**: If sensitive fields exist but no\\nvault is configured, the operation fails with a clear error rather than\\nsilently writing plaintext.\\n- **Vault resolution hierarchy**: Field `vaultName` > spec `vaultName` >\\nfirst available vault.\\n- **CEL-compatible references**: Single-quoted string arguments prevent\\nthe CEL parser from interpreting slashes in auto-generated keys as\\ndivision.\\n- **Snapshot-before-mutation**: Deep clone prevents one field's vault\\nref from leaking into another field's stored value.\\n\\n## Files changed\\n\\n**New:**\\n- `src/domain/models/sensitive_field_extractor.ts` \u2014 Zod schema walker\\nfor `{ sensitive: true }` metadata\\n- `src/domain/models/sensitive_field_extractor_test.ts` \u2014 16 unit tests\\n- `integration/sensitive_field_vault_test.ts` \u2014 3 integration tests\\n\\n**Modified:**\\n- `src/domain/models/model.ts` \u2014 `sensitiveOutput`/`vaultName` on\\n`ResourceOutputSpec`, `vaultService` on `MethodContext`\\n- `src/domain/models/data_writer.ts` \u2014 `processSensitiveResourceData()`\\n+ injection into `createResourceWriter()`\\n- `src/domain/models/data_writer_test.ts` \u2014 13 sensitive field unit\\ntests\\n- `src/domain/models/method_execution_service.ts` \u2014 pass\\n`vaultService`/`methodName` to `createResourceWriter()`\\n- `src/cli/commands/model_method_run.ts` \u2014 create `VaultService`, pass\\nto context\\n- `src/domain/workflows/execution_service.ts` \u2014 same vault wiring\\n- `design/vaults.md` \u2014 updated \\\"Sensitive Field Marking\\\" section to\\nreflect implementation\\n\\n## Test plan\\n\\n- [x] 16 unit tests for sensitive field extraction (schema walking,\\nnested objects, metadata orderings)\\n- [x] 13 unit tests for sensitive resource data processing (vault\\nreferences, storage, CEL format, nested paths, snapshots,\\nsensitiveOutput)\\n- [x] 3 integration tests (end-to-end sensitive field \u2192 vault \u2192\\nreference flow)\\n- [x] `deno check` passes\\n- [x] `deno lint` passes\\n- [x] `deno fmt` passes\\n- [x] `deno run test` \u2014 1909 tests, 0 failures\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"8ac4e79455a85bad3db580501fc786ecd0520900\",\n      \"createdAt\": \"2026-02-24T18:32:35+00:00\",\n      \"message\": \"feat: auto-store sensitive output fields in vault before persistence (#446)\\n\\nCloses #433\\nCloses #447\\n\\n## Summary\\n\\n- When upstream APIs return sensitive data (e.g., EC2 `CreateKeyPair`\\nreturns `KeyMaterial`), all fields were previously written as plaintext\\nto `.swamp/.data/`\\n- This change automatically detects fields marked with `{ sensitive:\\ntrue }` in Zod schema metadata and stores their values in the configured\\nvault, replacing the persisted value with a CEL-compatible vault\\nreference expression\\n- Zero impact on existing users \u2014 purely additive, no existing behavior\\nchanges\\n\\n## What users can now do\\n\\n**Mark individual output fields as sensitive in resource output specs:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({\\n      keyId: z.string(),\\n      keyMaterial: z.string().meta({ sensitive: true }),\\n    }),\\n    lifetime: \\\"infinite\\\",\\n    garbageCollection: 10,\\n  },\\n}\\n```\\n\\n**Mark an entire resource spec's output as sensitive:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({ ... }),\\n    sensitiveOutput: true,\\n    vaultName: \\\"my-vault\\\",  // Optional\\n    ...\\n  },\\n}\\n```\\n\\nPersisted files will contain vault references instead of plaintext:\\n```\\n${{ vault.get('vault-name', 'modelType/modelId/methodName/fieldPath') }}\\n```\\n\\n## Plan vs implementation\\n\\n| Area | Plan | Implementation |\\n|------|------|----------------|\\n| **Where sensitiveOutput lives** | `ResourceOutputSpec` (didn't exist\\nat plan time) | `ResourceOutputSpec` (now exists \u2014 per-spec, cleaner\\nthan per-method) |\\n| **Where processing happens** | Modify `createResourceWriter()` |\\nInside `createResourceWriter()` before `JSON.stringify(data)` \u2014\\ntransparent to methods |\\n| **VaultService factory** | `fromConfig()` (sync, reads .swamp.yaml) |\\n`fromRepository()` (already exists on main, async, reads .swamp/vault/)\\n|\\n| **Mutation safety** | Not addressed in plan | `structuredClone()`\\nsnapshot before mutation prevents cross-contamination |\\n| **Nested field handling** | Not addressed | Handled via\\n`setNestedValue()` without creating spurious literal dot-keys |\\n\\nThe divergences were driven by the codebase evolving significantly since\\nthe plan was written (DataWriter/DataHandle architecture,\\nResourceOutputSpec, unified data repository).\\n\\n## Architecture benefits\\n\\n- **Declarative security**: Model authors declare sensitivity in the\\nschema via `.meta()`, not in imperative code. The runtime enforces it\\ninside the DataWriter pipeline.\\n- **Transparent to methods**: Methods call `context.writeResource()` as\\nnormal. Sensitive field processing happens inside the writer \u2014 no\\nchanges needed in method implementations.\\n- **Fail-hard on misconfiguration**: If sensitive fields exist but no\\nvault is configured, the operation fails with a clear error rather than\\nsilently writing plaintext.\\n- **Vault resolution hierarchy**: Field `vaultName` > spec `vaultName` >\\nfirst available vault.\\n- **CEL-compatible references**: Single-quoted string arguments prevent\\nthe CEL parser from interpreting slashes in auto-generated keys as\\ndivision.\\n- **Snapshot-before-mutation**: Deep clone prevents one field's vault\\nref from leaking into another field's stored value.\\n\\n## Files changed\\n\\n**New:**\\n- `src/domain/models/sensitive_field_extractor.ts` \u2014 Zod schema walker\\nfor `{ sensitive: true }` metadata\\n- `src/domain/models/sensitive_field_extractor_test.ts` \u2014 16 unit tests\\n- `integration/sensitive_field_vault_test.ts` \u2014 3 integration tests\\n\\n**Modified:**\\n- `src/domain/models/model.ts` \u2014 `sensitiveOutput`/`vaultName` on\\n`ResourceOutputSpec`, `vaultService` on `MethodContext`\\n- `src/domain/models/data_writer.ts` \u2014 `processSensitiveResourceData()`\\n+ injection into `createResourceWriter()`\\n- `src/domain/models/data_writer_test.ts` \u2014 13 sensitive field unit\\ntests\\n- `src/domain/models/method_execution_service.ts` \u2014 pass\\n`vaultService`/`methodName` to `createResourceWriter()`\\n- `src/cli/commands/model_method_run.ts` \u2014 create `VaultService`, pass\\nto context\\n- `src/domain/workflows/execution_service.ts` \u2014 same vault wiring\\n- `design/vaults.md` \u2014 updated \\\"Sensitive Field Marking\\\" section to\\nreflect implementation\\n\\n## Test plan\\n\\n- [x] 16 unit tests for sensitive field extraction (schema walking,\\nnested objects, metadata orderings)\\n- [x] 13 unit tests for sensitive resource data processing (vault\\nreferences, storage, CEL format, nested paths, snapshots,\\nsensitiveOutput)\\n- [x] 3 integration tests (end-to-end sensitive field \u2192 vault \u2192\\nreference flow)\\n- [x] `deno check` passes\\n- [x] `deno lint` passes\\n- [x] `deno fmt` passes\\n- [x] `deno run test` \u2014 1909 tests, 0 failures\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T01:07:26.225+00:00\"\n  }\n}",
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    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T18:45:33.395Z",
    "command": "but commit workspace -c -m \"$(cat <<'EOF'\nfix: convert vault command Cliffy crashes to friendly UserError messages\n\nCloses #449\n\n## Problem\n\nSeveral vault commands crash with raw Cliffy stack traces when users\nprovide incorrect arguments:\n\n1. `swamp vault list-keys` (no vault name) crashes with:\n   `Error: Missing argument(s): vault_name` + full stack trace\n\n2. `swamp vault get my-vault KEY` (extra argument) crashes with:\n   `Error: Too many arguments: KEY` + full stack trace\n\nThese errors bypass the UserError system, so users see internal\nimplementation details instead of actionable guidance.\n\n## Root cause\n\nCliffy's argument parser throws its own `Error` (not `UserError`) during\n`parseArguments()` before the action handler runs. Since `renderError()`\nonly suppresses stack traces for `UserError` instances, these raw Cliffy\nerrors display full stack traces to users.\n\n## Fix\n\n### vault list-keys \u2014 missing argument\n\nChanged the argument from required (`<vault_name:string>`) to optional\n(`[vault_name:string]`) so Cliffy passes control to the action handler.\nAdded an early guard that throws a `UserError` with usage guidance:\n\n```\nError: Missing required argument: vault_name\n\nUsage: swamp vault list-keys <vault_name>\n\nUse 'swamp vault search' to see available vaults.\n```\n\n### vault get \u2014 extra argument\n\nAdded an optional `[extra:string]` argument to capture unexpected extra\nargs. When present, throws a `UserError` that explains the correct usage\nand redirects users to `vault list-keys`:\n\n```\nError: Unexpected argument: KeyMaterial\n\nUsage: swamp vault get <vault_name_or_id>\n\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\n```\n\n## User impact\n\n- Users who forget the vault name on `list-keys` now see a clean\n  one-line error with usage help instead of a stack trace\n- Users who try `vault get <name> <key>` (a common mistake when trying\n  to retrieve a secret) now get redirected to the correct command\n- No behavior change for correct usage \u2014 all existing functionality\n  is preserved\n\n## Verification\n\n- deno check \u2014 passes\n- deno lint \u2014 passes\n- deno fmt \u2014 passes\n- deno run test \u2014 1918 tests, 0 failures\n- deno run compile \u2014 binary compiles successfully\n\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" --changes mn,kx --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit both vault fixes",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"6921d47c6f9e4f41a5c8b04606b9b1ba8600b548\",\n    \"branch\": \"workspace\",\n    \"branch_tip\": \"6921d47c6f9e4f41a5c8b04606b9b1ba8600b548\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"wo\",\n            \"name\": \"workspace\",\n            \"commits\": [\n              {\n                \"cliId\": \"69\",\n                \"commitId\": \"6921d47c6f9e4f41a5c8b04606b9b1ba8600b548\",\n                \"createdAt\": \"2026-02-24T18:45:33+00:00\",\n                \"message\": \"fix: convert vault command Cliffy crashes to friendly UserError messages\\n\\nCloses #449\\n\\n## Problem\\n\\nSeveral vault commands crash with raw Cliffy stack traces when users\\nprovide incorrect arguments:\\n\\n1. `swamp vault list-keys` (no vault name) crashes with:\\n   `Error: Missing argument(s): vault_name` + full stack trace\\n\\n2. `swamp vault get my-vault KEY` (extra argument) crashes with:\\n   `Error: Too many arguments: KEY` + full stack trace\\n\\nThese errors bypass the UserError system, so users see internal\\nimplementation details instead of actionable guidance.\\n\\n## Root cause\\n\\nCliffy's argument parser throws its own `Error` (not `UserError`) during\\n`parseArguments()` before the action handler runs. Since `renderError()`\\nonly suppresses stack traces for `UserError` instances, these raw Cliffy\\nerrors display full stack traces to users.\\n\\n## Fix\\n\\n### vault list-keys \u2014 missing argument\\n\\nChanged the argument from required (`<vault_name:string>`) to optional\\n(`[vault_name:string]`) so Cliffy passes control to the action handler.\\nAdded an early guard that throws a `UserError` with usage guidance:\\n\\n```\\nError: Missing required argument: vault_name\\n\\nUsage: swamp vault list-keys <vault_name>\\n\\nUse 'swamp vault search' to see available vaults.\\n```\\n\\n### vault get \u2014 extra argument\\n\\nAdded an optional `[extra:string]` argument to capture unexpected extra\\nargs. When present, throws a `UserError` that explains the correct usage\\nand redirects users to `vault list-keys`:\\n\\n```\\nError: Unexpected argument: KeyMaterial\\n\\nUsage: swamp vault get <vault_name_or_id>\\n\\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\\n```\\n\\n## User impact\\n\\n- Users who forget the vault name on `list-keys` now see a clean\\n  one-line error with usage help instead of a stack trace\\n- Users who try `vault get <name> <key>` (a common mistake when trying\\n  to retrieve a secret) now get redirected to the correct command\\n- No behavior change for correct usage \u2014 all existing functionality\\n  is preserved\\n\\n## Verification\\n\\n- deno check \u2014 passes\\n- deno lint \u2014 passes\\n- deno fmt \u2014 passes\\n- deno run test \u2014 1918 tests, 0 failures\\n- deno run compile \u2014 binary compiles successfully\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"8ac4e79455a85bad3db580501fc786ecd0520900\",\n      \"createdAt\": \"2026-02-24T18:32:35+00:00\",\n      \"message\": \"feat: auto-store sensitive output fields in vault before persistence (#446)\\n\\nCloses #433\\nCloses #447\\n\\n## Summary\\n\\n- When upstream APIs return sensitive data (e.g., EC2 `CreateKeyPair`\\nreturns `KeyMaterial`), all fields were previously written as plaintext\\nto `.swamp/.data/`\\n- This change automatically detects fields marked with `{ sensitive:\\ntrue }` in Zod schema metadata and stores their values in the configured\\nvault, replacing the persisted value with a CEL-compatible vault\\nreference expression\\n- Zero impact on existing users \u2014 purely additive, no existing behavior\\nchanges\\n\\n## What users can now do\\n\\n**Mark individual output fields as sensitive in resource output specs:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({\\n      keyId: z.string(),\\n      keyMaterial: z.string().meta({ sensitive: true }),\\n    }),\\n    lifetime: \\\"infinite\\\",\\n    garbageCollection: 10,\\n  },\\n}\\n```\\n\\n**Mark an entire resource spec's output as sensitive:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({ ... }),\\n    sensitiveOutput: true,\\n    vaultName: \\\"my-vault\\\",  // Optional\\n    ...\\n  },\\n}\\n```\\n\\nPersisted files will contain vault references instead of plaintext:\\n```\\n${{ vault.get('vault-name', 'modelType/modelId/methodName/fieldPath') }}\\n```\\n\\n## Plan vs implementation\\n\\n| Area | Plan | Implementation |\\n|------|------|----------------|\\n| **Where sensitiveOutput lives** | `ResourceOutputSpec` (didn't exist\\nat plan time) | `ResourceOutputSpec` (now exists \u2014 per-spec, cleaner\\nthan per-method) |\\n| **Where processing happens** | Modify `createResourceWriter()` |\\nInside `createResourceWriter()` before `JSON.stringify(data)` \u2014\\ntransparent to methods |\\n| **VaultService factory** | `fromConfig()` (sync, reads .swamp.yaml) |\\n`fromRepository()` (already exists on main, async, reads .swamp/vault/)\\n|\\n| **Mutation safety** | Not addressed in plan | `structuredClone()`\\nsnapshot before mutation prevents cross-contamination |\\n| **Nested field handling** | Not addressed | Handled via\\n`setNestedValue()` without creating spurious literal dot-keys |\\n\\nThe divergences were driven by the codebase evolving significantly since\\nthe plan was written (DataWriter/DataHandle architecture,\\nResourceOutputSpec, unified data repository).\\n\\n## Architecture benefits\\n\\n- **Declarative security**: Model authors declare sensitivity in the\\nschema via `.meta()`, not in imperative code. The runtime enforces it\\ninside the DataWriter pipeline.\\n- **Transparent to methods**: Methods call `context.writeResource()` as\\nnormal. Sensitive field processing happens inside the writer \u2014 no\\nchanges needed in method implementations.\\n- **Fail-hard on misconfiguration**: If sensitive fields exist but no\\nvault is configured, the operation fails with a clear error rather than\\nsilently writing plaintext.\\n- **Vault resolution hierarchy**: Field `vaultName` > spec `vaultName` >\\nfirst available vault.\\n- **CEL-compatible references**: Single-quoted string arguments prevent\\nthe CEL parser from interpreting slashes in auto-generated keys as\\ndivision.\\n- **Snapshot-before-mutation**: Deep clone prevents one field's vault\\nref from leaking into another field's stored value.\\n\\n## Files changed\\n\\n**New:**\\n- `src/domain/models/sensitive_field_extractor.ts` \u2014 Zod schema walker\\nfor `{ sensitive: true }` metadata\\n- `src/domain/models/sensitive_field_extractor_test.ts` \u2014 16 unit tests\\n- `integration/sensitive_field_vault_test.ts` \u2014 3 integration tests\\n\\n**Modified:**\\n- `src/domain/models/model.ts` \u2014 `sensitiveOutput`/`vaultName` on\\n`ResourceOutputSpec`, `vaultService` on `MethodContext`\\n- `src/domain/models/data_writer.ts` \u2014 `processSensitiveResourceData()`\\n+ injection into `createResourceWriter()`\\n- `src/domain/models/data_writer_test.ts` \u2014 13 sensitive field unit\\ntests\\n- `src/domain/models/method_execution_service.ts` \u2014 pass\\n`vaultService`/`methodName` to `createResourceWriter()`\\n- `src/cli/commands/model_method_run.ts` \u2014 create `VaultService`, pass\\nto context\\n- `src/domain/workflows/execution_service.ts` \u2014 same vault wiring\\n- `design/vaults.md` \u2014 updated \\\"Sensitive Field Marking\\\" section to\\nreflect implementation\\n\\n## Test plan\\n\\n- [x] 16 unit tests for sensitive field extraction (schema walking,\\nnested objects, metadata orderings)\\n- [x] 13 unit tests for sensitive resource data processing (vault\\nreferences, storage, CEL format, nested paths, snapshots,\\nsensitiveOutput)\\n- [x] 3 integration tests (end-to-end sensitive field \u2192 vault \u2192\\nreference flow)\\n- [x] `deno check` passes\\n- [x] `deno lint` passes\\n- [x] `deno fmt` passes\\n- [x] `deno run test` \u2014 1909 tests, 0 failures\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"8ac4e79455a85bad3db580501fc786ecd0520900\",\n        \"createdAt\": \"2026-02-24T18:32:35+00:00\",\n        \"message\": \"feat: auto-store sensitive output fields in vault before persistence (#446)\\n\\nCloses #433\\nCloses #447\\n\\n## Summary\\n\\n- When upstream APIs return sensitive data (e.g., EC2 `CreateKeyPair`\\nreturns `KeyMaterial`), all fields were previously written as plaintext\\nto `.swamp/.data/`\\n- This change automatically detects fields marked with `{ sensitive:\\ntrue }` in Zod schema metadata and stores their values in the configured\\nvault, replacing the persisted value with a CEL-compatible vault\\nreference expression\\n- Zero impact on existing users \u2014 purely additive, no existing behavior\\nchanges\\n\\n## What users can now do\\n\\n**Mark individual output fields as sensitive in resource output specs:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({\\n      keyId: z.string(),\\n      keyMaterial: z.string().meta({ sensitive: true }),\\n    }),\\n    lifetime: \\\"infinite\\\",\\n    garbageCollection: 10,\\n  },\\n}\\n```\\n\\n**Mark an entire resource spec's output as sensitive:**\\n```typescript\\nresources: {\\n  result: {\\n    schema: z.object({ ... }),\\n    sensitiveOutput: true,\\n    vaultName: \\\"my-vault\\\",  // Optional\\n    ...\\n  },\\n}\\n```\\n\\nPersisted files will contain vault references instead of plaintext:\\n```\\n${{ vault.get('vault-name', 'modelType/modelId/methodName/fieldPath') }}\\n```\\n\\n## Plan vs implementation\\n\\n| Area | Plan | Implementation |\\n|------|------|----------------|\\n| **Where sensitiveOutput lives** | `ResourceOutputSpec` (didn't exist\\nat plan time) | `ResourceOutputSpec` (now exists \u2014 per-spec, cleaner\\nthan per-method) |\\n| **Where processing happens** | Modify `createResourceWriter()` |\\nInside `createResourceWriter()` before `JSON.stringify(data)` \u2014\\ntransparent to methods |\\n| **VaultService factory** | `fromConfig()` (sync, reads .swamp.yaml) |\\n`fromRepository()` (already exists on main, async, reads .swamp/vault/)\\n|\\n| **Mutation safety** | Not addressed in plan | `structuredClone()`\\nsnapshot before mutation prevents cross-contamination |\\n| **Nested field handling** | Not addressed | Handled via\\n`setNestedValue()` without creating spurious literal dot-keys |\\n\\nThe divergences were driven by the codebase evolving significantly since\\nthe plan was written (DataWriter/DataHandle architecture,\\nResourceOutputSpec, unified data repository).\\n\\n## Architecture benefits\\n\\n- **Declarative security**: Model authors declare sensitivity in the\\nschema via `.meta()`, not in imperative code. The runtime enforces it\\ninside the DataWriter pipeline.\\n- **Transparent to methods**: Methods call `context.writeResource()` as\\nnormal. Sensitive field processing happens inside the writer \u2014 no\\nchanges needed in method implementations.\\n- **Fail-hard on misconfiguration**: If sensitive fields exist but no\\nvault is configured, the operation fails with a clear error rather than\\nsilently writing plaintext.\\n- **Vault resolution hierarchy**: Field `vaultName` > spec `vaultName` >\\nfirst available vault.\\n- **CEL-compatible references**: Single-quoted string arguments prevent\\nthe CEL parser from interpreting slashes in auto-generated keys as\\ndivision.\\n- **Snapshot-before-mutation**: Deep clone prevents one field's vault\\nref from leaking into another field's stored value.\\n\\n## Files changed\\n\\n**New:**\\n- `src/domain/models/sensitive_field_extractor.ts` \u2014 Zod schema walker\\nfor `{ sensitive: true }` metadata\\n- `src/domain/models/sensitive_field_extractor_test.ts` \u2014 16 unit tests\\n- `integration/sensitive_field_vault_test.ts` \u2014 3 integration tests\\n\\n**Modified:**\\n- `src/domain/models/model.ts` \u2014 `sensitiveOutput`/`vaultName` on\\n`ResourceOutputSpec`, `vaultService` on `MethodContext`\\n- `src/domain/models/data_writer.ts` \u2014 `processSensitiveResourceData()`\\n+ injection into `createResourceWriter()`\\n- `src/domain/models/data_writer_test.ts` \u2014 13 sensitive field unit\\ntests\\n- `src/domain/models/method_execution_service.ts` \u2014 pass\\n`vaultService`/`methodName` to `createResourceWriter()`\\n- `src/cli/commands/model_method_run.ts` \u2014 create `VaultService`, pass\\nto context\\n- `src/domain/workflows/execution_service.ts` \u2014 same vault wiring\\n- `design/vaults.md` \u2014 updated \\\"Sensitive Field Marking\\\" section to\\nreflect implementation\\n\\n## Test plan\\n\\n- [x] 16 unit tests for sensitive field extraction (schema walking,\\nnested objects, metadata orderings)\\n- [x] 13 unit tests for sensitive resource data processing (vault\\nreferences, storage, CEL format, nested paths, snapshots,\\nsensitiveOutput)\\n- [x] 3 integration tests (end-to-end sensitive field \u2192 vault \u2192\\nreference flow)\\n- [x] `deno check` passes\\n- [x] `deno lint` passes\\n- [x] `deno fmt` passes\\n- [x] `deno run test` \u2014 1909 tests, 0 failures\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T01:07:26.225+00:00\"\n    }\n  }\n}",
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    "timestamp": "2026-02-24T18:45:36.990Z",
    "command": "but push wo",
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    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T21:13:48.366Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"su\",\n      \"filePath\": \".claude/skills/swamp-model/references/data-chaining.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"ywl\",\n      \"filePath\": \".claude/skills/swamp-model/references/examples.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"ns\",\n      \"filePath\": \".claude/skills/swamp-workflow/references/data-chaining.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"vv\",\n      \"filePath\": \"design/expressions.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"yk\",\n      \"filePath\": \"design/vaults.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"zn\",\n      \"filePath\": \"integration/cel_data_access_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"nu\",\n      \"filePath\": \"src/domain/expressions/model_resolver.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"xp\",\n      \"filePath\": \"src/domain/expressions/model_resolver_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"lt\",\n      \"filePath\": \"src/domain/models/command/shell/shell_model_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"lx\",\n      \"filePath\": \"src/domain/models/data_writer_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"yww\",\n      \"filePath\": \"src/domain/models/method_execution_service_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"vp\",\n      \"filePath\": \"src/domain/models/model_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"wr\",\n      \"filePath\": \"src/domain/models/user_model_loader_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"zm\",\n      \"filePath\": \"src/domain/repo/repo_service.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"qx\",\n      \"filePath\": \"src/infrastructure/cel/cel_evaluator.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"lu\",\n      \"filePath\": \"src/infrastructure/cel/cel_evaluator_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"vt\",\n      \"filePath\": \"src/infrastructure/persistence/unified_data_repository.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"pw\",\n      \"filePath\": \"src/infrastructure/persistence/unified_data_repository_test.ts\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"lp\",\n      \"filePath\": \"src/infrastructure/repo/symlink_repo_index_service_test.ts\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"5ec79b271740f18ed8b516e40946865e1bdddfe7\",\n    \"createdAt\": \"2026-02-24T18:50:46+00:00\",\n    \"message\": \"fix: convert vault command Cliffy crashes to friendly UserError messages (#451)\\n\\nCloses #449\\nCloses #450\\n\\n## Summary\\n\\n- `swamp vault list-keys` without a vault name now shows a clean error\\nmessage instead of a Cliffy stack trace\\n- `swamp vault get <name> <key>` (extra argument) now shows a helpful\\nerror redirecting users to `vault list-keys`\\n\\n## Problem\\n\\nSeveral vault commands crash with raw Cliffy stack traces when users\\nprovide incorrect arguments:\\n\\n**`swamp vault list-keys` (no vault name):**\\n```\\n17:54:44.691 FTL error Error: Missing argument(s): vault_name\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2482:19)\\n    ...\\n```\\n\\n**`swamp vault get my-vault KEY` (extra argument):**\\n```\\n17:57:52.947 FTL error Error: Too many arguments: ec2-keypair-KeyMaterial\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2554:17)\\n    ...\\n```\\n\\nThese errors bypass the `UserError` system, so `renderError()` shows\\nfull stack traces instead of clean messages.\\n\\n## Root cause\\n\\nCliffy's argument parser throws its own `Error` (not `UserError`) during\\n`parseArguments()` **before** the action handler runs. Since\\n`renderError()` only suppresses stack traces for `UserError` instances,\\nthese raw errors display internal implementation details to users.\\n\\n## Fix\\n\\n### vault list-keys \u2014 missing argument\\n\\nChanged the Cliffy argument from required (`<vault_name:string>`) to\\noptional (`[vault_name:string]`) so control reaches the action handler.\\nAdded an early guard that throws a `UserError`:\\n\\n```\\nError: Missing required argument: vault_name\\n\\nUsage: swamp vault list-keys <vault_name>\\n\\nUse 'swamp vault search' to see available vaults.\\n```\\n\\n### vault get \u2014 extra argument\\n\\nAdded an optional `[extra:string]` argument to capture unexpected args\\nthat Cliffy would otherwise reject with a stack trace. When present,\\nthrows a `UserError`:\\n\\n```\\nError: Unexpected argument: KeyMaterial\\n\\nUsage: swamp vault get <vault_name_or_id>\\n\\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\\n```\\n\\nThe `vault get` case is particularly important because users naturally\\ntry `vault get <name> <key>` when they want to retrieve a secret value \u2014\\nthe error now redirects them to the correct command.\\n\\n## User impact\\n\\n- Users who forget the vault name on `list-keys` see actionable guidance\\ninstead of a stack trace\\n- Users who try `vault get <name> <key>` get redirected to `vault\\nlist-keys`\\n- No behavior change for correct usage \u2014 all existing functionality is\\npreserved\\n\\n## Test plan\\n\\n- [x] `deno check` \u2014 passes\\n- [x] `deno lint` \u2014 passes\\n- [x] `deno fmt` \u2014 passes\\n- [x] `deno run test` \u2014 1918 tests, 0 failures\\n- [x] `deno run compile` \u2014 binary compiles successfully\\n\\nUAT test coverage tracked in systeminit/swamp-uat#33\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"5ec79b271740f18ed8b516e40946865e1bdddfe7\",\n      \"createdAt\": \"2026-02-24T18:50:46+00:00\",\n      \"message\": \"fix: convert vault command Cliffy crashes to friendly UserError messages (#451)\\n\\nCloses #449\\nCloses #450\\n\\n## Summary\\n\\n- `swamp vault list-keys` without a vault name now shows a clean error\\nmessage instead of a Cliffy stack trace\\n- `swamp vault get <name> <key>` (extra argument) now shows a helpful\\nerror redirecting users to `vault list-keys`\\n\\n## Problem\\n\\nSeveral vault commands crash with raw Cliffy stack traces when users\\nprovide incorrect arguments:\\n\\n**`swamp vault list-keys` (no vault name):**\\n```\\n17:54:44.691 FTL error Error: Missing argument(s): vault_name\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2482:19)\\n    ...\\n```\\n\\n**`swamp vault get my-vault KEY` (extra argument):**\\n```\\n17:57:52.947 FTL error Error: Too many arguments: ec2-keypair-KeyMaterial\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2554:17)\\n    ...\\n```\\n\\nThese errors bypass the `UserError` system, so `renderError()` shows\\nfull stack traces instead of clean messages.\\n\\n## Root cause\\n\\nCliffy's argument parser throws its own `Error` (not `UserError`) during\\n`parseArguments()` **before** the action handler runs. Since\\n`renderError()` only suppresses stack traces for `UserError` instances,\\nthese raw errors display internal implementation details to users.\\n\\n## Fix\\n\\n### vault list-keys \u2014 missing argument\\n\\nChanged the Cliffy argument from required (`<vault_name:string>`) to\\noptional (`[vault_name:string]`) so control reaches the action handler.\\nAdded an early guard that throws a `UserError`:\\n\\n```\\nError: Missing required argument: vault_name\\n\\nUsage: swamp vault list-keys <vault_name>\\n\\nUse 'swamp vault search' to see available vaults.\\n```\\n\\n### vault get \u2014 extra argument\\n\\nAdded an optional `[extra:string]` argument to capture unexpected args\\nthat Cliffy would otherwise reject with a stack trace. When present,\\nthrows a `UserError`:\\n\\n```\\nError: Unexpected argument: KeyMaterial\\n\\nUsage: swamp vault get <vault_name_or_id>\\n\\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\\n```\\n\\nThe `vault get` case is particularly important because users naturally\\ntry `vault get <name> <key>` when they want to retrieve a secret value \u2014\\nthe error now redirects them to the correct command.\\n\\n## User impact\\n\\n- Users who forget the vault name on `list-keys` see actionable guidance\\ninstead of a stack trace\\n- Users who try `vault get <name> <key>` get redirected to `vault\\nlist-keys`\\n- No behavior change for correct usage \u2014 all existing functionality is\\npreserved\\n\\n## Test plan\\n\\n- [x] `deno check` \u2014 passes\\n- [x] `deno lint` \u2014 passes\\n- [x] `deno fmt` \u2014 passes\\n- [x] `deno run test` \u2014 1918 tests, 0 failures\\n- [x] `deno run compile` \u2014 binary compiles successfully\\n\\nUAT test coverage tracked in systeminit/swamp-uat#33\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T01:07:26.225+00:00\"\n  }\n}",
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    "command": "but branch new unify-data-access",
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    "output": "Last fetch was 20h ago. Initiated a background sync...\n\u2713 Created branch unify-data-access",
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    "session_id": "630153f9-ad5c-4924-807b-61493826f00a",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T21:14:29.811Z",
    "command": "but commit unify-data-access -c -m \"$(cat <<'EOF'\nrefactor: unify data access \u2014 make data.latest() the canonical accessor\n\nRemove the DataCache class and replace it with direct synchronous disk reads\nvia Deno's sync filesystem APIs. This makes `data.latest()` always return\nfresh on-disk state instead of reading from a snapshot taken at buildContext()\ntime. The `model.*.resource` and `model.*.file` CEL patterns are deprecated\nwith warnings, but still work for backward compatibility.\n\n## Why this change\n\nThe DataCache was an implementation accident, not a design choice. It existed\nsolely because CEL evaluation is synchronous but all UnifiedDataRepository\nmethods were async. Deno provides sync filesystem APIs (readTextFileSync,\nreadLinkSync, readDirSync, readFileSync), making the cache unnecessary.\n\nBefore this change, users had to reason about \"which accessor sees what data\nwhen\" \u2014 `data.latest()` read from a cache snapshot, and `model.*.resource`\nwas eagerly populated. After this change, `data.latest()` always means \"read\nthe latest from disk\" with no hidden staleness or snapshot timing to reason\nabout.\n\nAlpha is the right time for this change. The user base is small, and this kind\nof simplification only gets harder later. The alternative \u2014 keeping the cache\nbut updating it after each step \u2014 would leave unnecessary abstraction in place\nand make the code harder to reason about.\n\n## What changed\n\n### Core implementation\n\n- **Removed `DataCache` class** from `model_resolver.ts` \u2014 the unnecessary\n  abstraction that bridged sync CEL with async repo methods\n- **Added `ModelCoordinates` interface and `ModelCoordinatesMap` type** \u2014 maps\n  model names to disk coordinates (modelType + modelId), supporting orphan\n  recovery when models are deleted and recreated with new UUIDs\n- **Added 5 sync methods** to `UnifiedDataRepository` interface and\n  `FileSystemUnifiedDataRepository`:\n  - `getLatestVersionSync` \u2014 reads `latest` symlink, falls back to dir scan\n  - `findByNameSync` \u2014 resolves version, reads metadata.yaml\n  - `listVersionsSync` \u2014 scans version directories\n  - `getContentSync` \u2014 reads raw content file\n  - `findAllForModelSync` \u2014 scans all data names for a model\n- **Rewrote `data.*` CEL namespace functions** to use sync disk reads instead\n  of cache lookups\n- **Fixed `findByTag` deduplication** \u2014 prevents duplicate records when data\n  exists under both current and orphan coordinates\n- **Fixed `findByTag`/`findBySpec` to scan all versions** \u2014 not just latest\n\n### Deprecation\n\n- **Added deprecation warnings** in `CelEvaluator` for `model.*.resource` and\n  `model.*.file` patterns via LogTape logger with deduplication\n- `model.*.resource` and `model.*.file` are still eagerly populated in\n  `buildContext()` for backward compatibility \u2014 they work but emit warnings\n- `model.*.input`, `model.*.definition`, `model.*.execution` are NOT\n  deprecated \u2014 these are model metadata, not versioned data\n\n### Documentation\n\n- Updated `design/expressions.md` and `design/vaults.md` \u2014 examples use\n  `data.latest()` instead of deprecated patterns\n- Updated `repo_service.ts` CLAUDE.md guidance \u2014 now recommends `data.latest()`\n  over `model.*.resource`\n- Updated skill references (swamp-model, swamp-workflow) \u2014 marked `data.latest()`\n  as preferred, `model.*.resource` as deprecated\n\n### Tests\n\n- Rewrote `model_resolver_test.ts` \u2014 removed DataCache tests, added 8+ sync\n  behavior tests including deduplication and post-buildContext freshness\n- Added 8 sync method tests to `unified_data_repository_test.ts`\n- Added 3 deprecation warning tests to `cel_evaluator_test.ts`\n- Added integration test verifying `data.latest()` sees data written after\n  `buildContext()`\n- Fixed 6 mock files to implement new sync interface methods\n\n## Plan vs implementation\n\nAll 5 planned steps were fully implemented. Three unplanned items were\ndiscovered and fixed during testing:\n\n1. 6 mock `UnifiedDataRepository` implementations needed sync method stubs\n2. `findByTag`/`findBySpec` initially only scanned latest version \u2014 fixed to\n   scan all versions\n3. `findByTag` needed deduplication logic for orphan coordinate overlap\n\n## Known trade-off\n\n`findByTag()` and `findBySpec()` scan all metadata files synchronously on\nevery call \u2014 O(total_data_items). This is acceptable for alpha: these functions\nare rarely used, the data is local filesystem, and if it becomes a problem the\nfix (lightweight tag index during `findAllGlobal()`) is well-understood.\n\n## User impact\n\n- **`data.latest()` now always returns fresh data** \u2014 no more stale snapshots\n  from buildContext() time\n- **`model.*.resource`/`model.*.file` still work** but emit deprecation\n  warnings; users should migrate to `data.latest()`\n- **No breaking changes** \u2014 all existing workflows and models continue to work\n- **Vary dimensions fully supported** via `data.latest()` 3-argument form\n\n## Verification\n\n- `deno check` \u2014 passes\n- `deno lint` \u2014 passes\n- `deno fmt` \u2014 passes\n- `deno run test` \u2014 1926 tests, 0 failures\n- `deno run compile` \u2014 binary compiles successfully\n\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" --changes su,ywl,ns,vv,yk,zn,nu,xp,lt,lx,yww,vp,wr,zm,qx,lu,vt,pw,lp --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit all changes to unify-data-access branch",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"8da590f638c598cc0433656a5e033d66c277d55f\",\n    \"branch\": \"unify-data-access\",\n    \"branch_tip\": \"8da590f638c598cc0433656a5e033d66c277d55f\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"un\",\n            \"name\": \"unify-data-access\",\n            \"commits\": [\n              {\n                \"cliId\": \"8d\",\n                \"commitId\": \"8da590f638c598cc0433656a5e033d66c277d55f\",\n                \"createdAt\": \"2026-02-24T21:15:29+00:00\",\n                \"message\": \"refactor: unify data access \u2014 make data.latest() the canonical accessor\\n\\nRemove the DataCache class and replace it with direct synchronous disk reads\\nvia Deno's sync filesystem APIs. This makes `data.latest()` always return\\nfresh on-disk state instead of reading from a snapshot taken at buildContext()\\ntime. The `model.*.resource` and `model.*.file` CEL patterns are deprecated\\nwith warnings, but still work for backward compatibility.\\n\\n## Why this change\\n\\nThe DataCache was an implementation accident, not a design choice. It existed\\nsolely because CEL evaluation is synchronous but all UnifiedDataRepository\\nmethods were async. Deno provides sync filesystem APIs (readTextFileSync,\\nreadLinkSync, readDirSync, readFileSync), making the cache unnecessary.\\n\\nBefore this change, users had to reason about \\\"which accessor sees what data\\nwhen\\\" \u2014 `data.latest()` read from a cache snapshot, and `model.*.resource`\\nwas eagerly populated. After this change, `data.latest()` always means \\\"read\\nthe latest from disk\\\" with no hidden staleness or snapshot timing to reason\\nabout.\\n\\nAlpha is the right time for this change. The user base is small, and this kind\\nof simplification only gets harder later. The alternative \u2014 keeping the cache\\nbut updating it after each step \u2014 would leave unnecessary abstraction in place\\nand make the code harder to reason about.\\n\\n## What changed\\n\\n### Core implementation\\n\\n- **Removed `DataCache` class** from `model_resolver.ts` \u2014 the unnecessary\\n  abstraction that bridged sync CEL with async repo methods\\n- **Added `ModelCoordinates` interface and `ModelCoordinatesMap` type** \u2014 maps\\n  model names to disk coordinates (modelType + modelId), supporting orphan\\n  recovery when models are deleted and recreated with new UUIDs\\n- **Added 5 sync methods** to `UnifiedDataRepository` interface and\\n  `FileSystemUnifiedDataRepository`:\\n  - `getLatestVersionSync` \u2014 reads `latest` symlink, falls back to dir scan\\n  - `findByNameSync` \u2014 resolves version, reads metadata.yaml\\n  - `listVersionsSync` \u2014 scans version directories\\n  - `getContentSync` \u2014 reads raw content file\\n  - `findAllForModelSync` \u2014 scans all data names for a model\\n- **Rewrote `data.*` CEL namespace functions** to use sync disk reads instead\\n  of cache lookups\\n- **Fixed `findByTag` deduplication** \u2014 prevents duplicate records when data\\n  exists under both current and orphan coordinates\\n- **Fixed `findByTag`/`findBySpec` to scan all versions** \u2014 not just latest\\n\\n### Deprecation\\n\\n- **Added deprecation warnings** in `CelEvaluator` for `model.*.resource` and\\n  `model.*.file` patterns via LogTape logger with deduplication\\n- `model.*.resource` and `model.*.file` are still eagerly populated in\\n  `buildContext()` for backward compatibility \u2014 they work but emit warnings\\n- `model.*.input`, `model.*.definition`, `model.*.execution` are NOT\\n  deprecated \u2014 these are model metadata, not versioned data\\n\\n### Documentation\\n\\n- Updated `design/expressions.md` and `design/vaults.md` \u2014 examples use\\n  `data.latest()` instead of deprecated patterns\\n- Updated `repo_service.ts` CLAUDE.md guidance \u2014 now recommends `data.latest()`\\n  over `model.*.resource`\\n- Updated skill references (swamp-model, swamp-workflow) \u2014 marked `data.latest()`\\n  as preferred, `model.*.resource` as deprecated\\n\\n### Tests\\n\\n- Rewrote `model_resolver_test.ts` \u2014 removed DataCache tests, added 8+ sync\\n  behavior tests including deduplication and post-buildContext freshness\\n- Added 8 sync method tests to `unified_data_repository_test.ts`\\n- Added 3 deprecation warning tests to `cel_evaluator_test.ts`\\n- Added integration test verifying `data.latest()` sees data written after\\n  `buildContext()`\\n- Fixed 6 mock files to implement new sync interface methods\\n\\n## Plan vs implementation\\n\\nAll 5 planned steps were fully implemented. Three unplanned items were\\ndiscovered and fixed during testing:\\n\\n1. 6 mock `UnifiedDataRepository` implementations needed sync method stubs\\n2. `findByTag`/`findBySpec` initially only scanned latest version \u2014 fixed to\\n   scan all versions\\n3. `findByTag` needed deduplication logic for orphan coordinate overlap\\n\\n## Known trade-off\\n\\n`findByTag()` and `findBySpec()` scan all metadata files synchronously on\\nevery call \u2014 O(total_data_items). This is acceptable for alpha: these functions\\nare rarely used, the data is local filesystem, and if it becomes a problem the\\nfix (lightweight tag index during `findAllGlobal()`) is well-understood.\\n\\n## User impact\\n\\n- **`data.latest()` now always returns fresh data** \u2014 no more stale snapshots\\n  from buildContext() time\\n- **`model.*.resource`/`model.*.file` still work** but emit deprecation\\n  warnings; users should migrate to `data.latest()`\\n- **No breaking changes** \u2014 all existing workflows and models continue to work\\n- **Vary dimensions fully supported** via `data.latest()` 3-argument form\\n\\n## Verification\\n\\n- `deno check` \u2014 passes\\n- `deno lint` \u2014 passes\\n- `deno fmt` \u2014 passes\\n- `deno run test` \u2014 1926 tests, 0 failures\\n- `deno run compile` \u2014 binary compiles successfully\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"5ec79b271740f18ed8b516e40946865e1bdddfe7\",\n      \"createdAt\": \"2026-02-24T18:50:46+00:00\",\n      \"message\": \"fix: convert vault command Cliffy crashes to friendly UserError messages (#451)\\n\\nCloses #449\\nCloses #450\\n\\n## Summary\\n\\n- `swamp vault list-keys` without a vault name now shows a clean error\\nmessage instead of a Cliffy stack trace\\n- `swamp vault get <name> <key>` (extra argument) now shows a helpful\\nerror redirecting users to `vault list-keys`\\n\\n## Problem\\n\\nSeveral vault commands crash with raw Cliffy stack traces when users\\nprovide incorrect arguments:\\n\\n**`swamp vault list-keys` (no vault name):**\\n```\\n17:54:44.691 FTL error Error: Missing argument(s): vault_name\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2482:19)\\n    ...\\n```\\n\\n**`swamp vault get my-vault KEY` (extra argument):**\\n```\\n17:57:52.947 FTL error Error: Too many arguments: ec2-keypair-KeyMaterial\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2554:17)\\n    ...\\n```\\n\\nThese errors bypass the `UserError` system, so `renderError()` shows\\nfull stack traces instead of clean messages.\\n\\n## Root cause\\n\\nCliffy's argument parser throws its own `Error` (not `UserError`) during\\n`parseArguments()` **before** the action handler runs. Since\\n`renderError()` only suppresses stack traces for `UserError` instances,\\nthese raw errors display internal implementation details to users.\\n\\n## Fix\\n\\n### vault list-keys \u2014 missing argument\\n\\nChanged the Cliffy argument from required (`<vault_name:string>`) to\\noptional (`[vault_name:string]`) so control reaches the action handler.\\nAdded an early guard that throws a `UserError`:\\n\\n```\\nError: Missing required argument: vault_name\\n\\nUsage: swamp vault list-keys <vault_name>\\n\\nUse 'swamp vault search' to see available vaults.\\n```\\n\\n### vault get \u2014 extra argument\\n\\nAdded an optional `[extra:string]` argument to capture unexpected args\\nthat Cliffy would otherwise reject with a stack trace. When present,\\nthrows a `UserError`:\\n\\n```\\nError: Unexpected argument: KeyMaterial\\n\\nUsage: swamp vault get <vault_name_or_id>\\n\\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\\n```\\n\\nThe `vault get` case is particularly important because users naturally\\ntry `vault get <name> <key>` when they want to retrieve a secret value \u2014\\nthe error now redirects them to the correct command.\\n\\n## User impact\\n\\n- Users who forget the vault name on `list-keys` see actionable guidance\\ninstead of a stack trace\\n- Users who try `vault get <name> <key>` get redirected to `vault\\nlist-keys`\\n- No behavior change for correct usage \u2014 all existing functionality is\\npreserved\\n\\n## Test plan\\n\\n- [x] `deno check` \u2014 passes\\n- [x] `deno lint` \u2014 passes\\n- [x] `deno fmt` \u2014 passes\\n- [x] `deno run test` \u2014 1918 tests, 0 failures\\n- [x] `deno run compile` \u2014 binary compiles successfully\\n\\nUAT test coverage tracked in systeminit/swamp-uat#33\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"5ec79b271740f18ed8b516e40946865e1bdddfe7\",\n        \"createdAt\": \"2026-02-24T18:50:46+00:00\",\n        \"message\": \"fix: convert vault command Cliffy crashes to friendly UserError messages (#451)\\n\\nCloses #449\\nCloses #450\\n\\n## Summary\\n\\n- `swamp vault list-keys` without a vault name now shows a clean error\\nmessage instead of a Cliffy stack trace\\n- `swamp vault get <name> <key>` (extra argument) now shows a helpful\\nerror redirecting users to `vault list-keys`\\n\\n## Problem\\n\\nSeveral vault commands crash with raw Cliffy stack traces when users\\nprovide incorrect arguments:\\n\\n**`swamp vault list-keys` (no vault name):**\\n```\\n17:54:44.691 FTL error Error: Missing argument(s): vault_name\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2482:19)\\n    ...\\n```\\n\\n**`swamp vault get my-vault KEY` (extra argument):**\\n```\\n17:57:52.947 FTL error Error: Too many arguments: ec2-keypair-KeyMaterial\\n    at Command.parseArguments (https://jsr.io/@cliffy/command/1.0.0/command.ts:2554:17)\\n    ...\\n```\\n\\nThese errors bypass the `UserError` system, so `renderError()` shows\\nfull stack traces instead of clean messages.\\n\\n## Root cause\\n\\nCliffy's argument parser throws its own `Error` (not `UserError`) during\\n`parseArguments()` **before** the action handler runs. Since\\n`renderError()` only suppresses stack traces for `UserError` instances,\\nthese raw errors display internal implementation details to users.\\n\\n## Fix\\n\\n### vault list-keys \u2014 missing argument\\n\\nChanged the Cliffy argument from required (`<vault_name:string>`) to\\noptional (`[vault_name:string]`) so control reaches the action handler.\\nAdded an early guard that throws a `UserError`:\\n\\n```\\nError: Missing required argument: vault_name\\n\\nUsage: swamp vault list-keys <vault_name>\\n\\nUse 'swamp vault search' to see available vaults.\\n```\\n\\n### vault get \u2014 extra argument\\n\\nAdded an optional `[extra:string]` argument to capture unexpected args\\nthat Cliffy would otherwise reject with a stack trace. When present,\\nthrows a `UserError`:\\n\\n```\\nError: Unexpected argument: KeyMaterial\\n\\nUsage: swamp vault get <vault_name_or_id>\\n\\nTo retrieve a secret value, use: swamp vault list-keys <vault_name>\\n```\\n\\nThe `vault get` case is particularly important because users naturally\\ntry `vault get <name> <key>` when they want to retrieve a secret value \u2014\\nthe error now redirects them to the correct command.\\n\\n## User impact\\n\\n- Users who forget the vault name on `list-keys` see actionable guidance\\ninstead of a stack trace\\n- Users who try `vault get <name> <key>` get redirected to `vault\\nlist-keys`\\n- No behavior change for correct usage \u2014 all existing functionality is\\npreserved\\n\\n## Test plan\\n\\n- [x] `deno check` \u2014 passes\\n- [x] `deno lint` \u2014 passes\\n- [x] `deno fmt` \u2014 passes\\n- [x] `deno run test` \u2014 1918 tests, 0 failures\\n- [x] `deno run compile` \u2014 binary compiles successfully\\n\\nUAT test coverage tracked in systeminit/swamp-uat#33\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T21:13:53.358+00:00\"\n    }\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "630153f9-ad5c-4924-807b-61493826f00a",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T21:15:33.305Z",
    "command": "but push un",
    "but_subcommand": "push",
    "description": "Push unify-data-access branch",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "630153f9-ad5c-4924-807b-61493826f00a",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T21:15:41.676Z",
    "command": "but push un 2>&1",
    "but_subcommand": "push",
    "description": "Push unify-data-access branch (with stderr)",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:07:56.517Z",
    "command": "but branch create fix-zero-duration-lifetime",
    "but_subcommand": "branch",
    "description": "Create new branch for the fix",
    "output": "Exit code 2\nerror: unrecognized subcommand 'create'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unrecognized subcommand 'create'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:07:58.792Z",
    "command": "but branch --help",
    "but_subcommand": "branch",
    "description": "Check branch subcommands",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:08:01.937Z",
    "command": "but branch new fix-zero-duration-lifetime",
    "but_subcommand": "branch",
    "description": "Create new branch for the fix",
    "output": "Last fetch was 54m ago. Initiated a background sync...\n\u2713 Created branch fix-zero-duration-lifetime",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:08:03.988Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check gitbutler status",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   ku M src/domain/data/data.ts \n\u250a   uz M src/domain/data/data_lifecycle_service_test.ts \n\u250a   zn M src/domain/data/data_metadata.ts \n\u250a   so A src/domain/data/data_metadata_test.ts \n\u250a   mu M src/domain/data/data_test.ts \n\u250a\n\u250a\u256d\u2504fi [fix-zero-duration-lifetime] (no commits) \n\u251c\u256f\n\u250a\n\u2534 dff8ccb [origin/main] 2026-02-24 refactor: unify data access \u2014 make data.\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:08:07.313Z",
    "command": "but stage src/domain/data/data.ts src/domain/data/data_lifecycle_service_test.ts src/domain/data/data_metadata.ts src/domain/data/data_metadata_test.ts src/domain/data/data_test.ts --branch fix-zero-duration-lifetime",
    "but_subcommand": "stage",
    "description": "Stage all changed files to the branch",
    "output": "Exit code 2\nerror: unexpected argument 'src/domain/data/data_metadata.ts' found\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.\n\nerror: unexpected argument 'src/domain/data/data_metadata.ts' found\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:08:14.281Z",
    "command": "but stage --help",
    "but_subcommand": "stage",
    "description": "Check stage command usage",
    "output": "Stages a file or hunk to a specific branch.\n\nWithout arguments, opens an interactive TUI for selecting files and hunks to stage.\nWith arguments, stages the specified file or hunk to the given branch.\n\nUsage:\n  `but stage`                             (interactive TUI selector)\n  `but stage --branch <branch>`           (interactive, specific branch)\n  `but stage <file-or-hunk> <branch>`     (direct staging)\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nArguments:\n  [FILE_OR_HUNK]\n          File or hunk ID to stage\n\n  [BRANCH_POS]\n          Branch to stage to (positional)\n\nOptions:\n  -b, --branch <BRANCH>\n          Branch to stage to (for interactive mode)\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:08:55.108Z",
    "command": "but stage ku fix-zero-duration-lifetime && but stage uz fix-zero-duration-lifetime && but stage zn fix-zero-duration-lifetime && but stage so fix-zero-duration-lifetime && but stage mu fix-zero-duration-lifetime",
    "but_subcommand": "stage",
    "description": "Stage all files to the branch",
    "output": "Staged all hunks in src/domain/data/data.ts in the unassigned area \u2192 [fix-zero-duration-lifetime].\n\nStaged the only hunk in src/domain/data/data_lifecycle_service_test.ts in the unassigned area \u2192 [fix-zero-duration-lifetime].\n\nStaged the only hunk in src/domain/data/data_metadata.ts in the unassigned area \u2192 [fix-zero-duration-lifetime].\n\nStaged the only hunk in src/domain/data/data_metadata_test.ts in the unassigned area \u2192 [fix-zero-duration-lifetime].\n\nStaged the only hunk in src/domain/data/data_test.ts in the unassigned area \u2192 [fix-zero-duration-lifetime].",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:09:25.394Z",
    "command": "but commit --branch fix-zero-duration-lifetime -m \"$(cat <<'EOF'\nfix: normalize zero-duration lifetime to \"workflow\" instead of immediate expiry\n\nZero-duration strings like \"0h\", \"0d\", \"00w\" passed LifetimeSchema validation\nbut produced 0ms when parsed by parseDuration(), causing data to expire\nimmediately on creation. GC would then delete it on the next scan.\n\nInstead of rejecting zero-duration values (which could break existing on-disk\ndata), we normalize them to \"workflow\" lifetime at the Data entity boundary.\nThis means the data lives for the duration of the workflow run \u2014 a sensible\ndefault that prevents silent data loss.\n\nThe fix has three parts:\n\n1. normalizeLifetime() helper in data_metadata.ts \u2014 converts zero-duration\n   strings (including multi-digit zeros like \"00d\", \"000h\") to \"workflow\"\n   while passing through all other values unchanged.\n\n2. Data.create() and Data.fromData() both call normalizeLifetime() before\n   Zod validation. This handles both new data creation and loading legacy\n   on-disk data that may have been saved with \"0h\".\n\n3. GarbageCollectionSchema uses .refine() to reject zero-duration strings.\n   Unlike lifetime (where normalization preserves backward compat), a GC\n   policy of \"0d\" is nonsensical (\"keep versions from the last 0 days\")\n   and was already implicitly broken. The refine approach (vs regex change)\n   preserves acceptance of leading-zero non-zero values like \"01d\".\n\nRegarding the interaction between workflow lifetime and GC: these are\northogonal mechanisms. Lifetime controls *when* data expires (workflow\nlifetime = when the workflow run is deleted). GC controls *how many\nversions* are retained on disk. With lifetime=\"workflow\" and gc=1, data\nlives for the workflow run duration and keeps only the 1 most recent\nversion \u2014 no conflict.\n\nCloses #338\n\nCo-authored-by: Magistr <umag@users.noreply.github.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Create commit with detailed message",
    "output": "Exit code 2\nerror: unexpected argument '--branch' found\n\n  tip: to pass '--branch' as a value, use '-- --branch'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '--branch' found\n\n  tip: to pass '--branch' as a value, use '-- --branch'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:09:28.775Z",
    "command": "but commit --help",
    "but_subcommand": "commit",
    "description": "Check commit command usage",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created\n\n  -j, --json\n          Whether to use JSON output format\n\n  -o, --only\n          Only commit staged files, not unstaged files\n\n  -n, --no-hooks\n          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:09:42.023Z",
    "command": "but commit fix-zero-duration-lifetime -m \"$(cat <<'EOF'\nfix: normalize zero-duration lifetime to \"workflow\" instead of immediate expiry\n\nZero-duration strings like \"0h\", \"0d\", \"00w\" passed LifetimeSchema validation\nbut produced 0ms when parsed by parseDuration(), causing data to expire\nimmediately on creation. GC would then delete it on the next scan.\n\nInstead of rejecting zero-duration values (which could break existing on-disk\ndata), we normalize them to \"workflow\" lifetime at the Data entity boundary.\nThis means the data lives for the duration of the workflow run \u2014 a sensible\ndefault that prevents silent data loss.\n\nThe fix has three parts:\n\n1. normalizeLifetime() helper in data_metadata.ts \u2014 converts zero-duration\n   strings (including multi-digit zeros like \"00d\", \"000h\") to \"workflow\"\n   while passing through all other values unchanged.\n\n2. Data.create() and Data.fromData() both call normalizeLifetime() before\n   Zod validation. This handles both new data creation and loading legacy\n   on-disk data that may have been saved with \"0h\".\n\n3. GarbageCollectionSchema uses .refine() to reject zero-duration strings.\n   Unlike lifetime (where normalization preserves backward compat), a GC\n   policy of \"0d\" is nonsensical (\"keep versions from the last 0 days\")\n   and was already implicitly broken. The refine approach (vs regex change)\n   preserves acceptance of leading-zero non-zero values like \"01d\".\n\nRegarding the interaction between workflow lifetime and GC: these are\northogonal mechanisms. Lifetime controls *when* data expires (workflow\nlifetime = when the workflow run is deleted). GC controls *how many\nversions* are retained on disk. With lifetime=\"workflow\" and gc=1, data\nlives for the workflow run duration and keeps only the 1 most recent\nversion \u2014 no conflict.\n\nCloses #338\n\nCo-authored-by: Magistr <umag@users.noreply.github.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Create commit on fix-zero-duration-lifetime branch",
    "output": "\u2713 Created commit c6c1251 on branch fix-zero-duration-lifetime",
    "is_error": false
  },
  {
    "session_id": "a95876bd-20a7-4438-98c4-0c3f41ce1fcf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T22:09:44.566Z",
    "command": "but push fix-zero-duration-lifetime",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:29:02.628Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "Exit code 1\n{\n  \"error\": \"setup_required\",\n  \"message\": \"No GitButler project found at .\",\n  \"hint\": \"run `but setup` to configure the project\"\n}\nError: Setup required: No GitButler project found at .\n\n{\n  \"error\": \"setup_required\",\n  \"message\": \"No GitButler project found at .\",\n  \"hint\": \"run `but setup` to configure the project\"\n}\nError: Setup required: No GitButler project found at .",
    "is_error": true
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:29:07.005Z",
    "command": "but setup",
    "but_subcommand": "setup",
    "description": "Setup GitButler for this project",
    "output": "Setting up GitButler project...\n\n\u2192 Adding repository to GitButler project registry\n  \u2713 Repository already in project registry\n\nGitButler project is already set up!\nTarget branch: origin/main\n\n\n\n \u2588\u2588\u2588\u2588\u2588      \u2588\u2588\u2588\u2588\u2588    \u2588\u2588\u2588\u2588\u2588\u2588\u2557 \u2588\u2588\u2557   \u2588\u2588\u2557\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2557\n   \u2588\u2588\u2588\u2588\u2588  \u2588\u2588\u2588\u2588\u2588      \u2588\u2588\u2554\u2550\u2550\u2588\u2588\u2557\u2588\u2588\u2551   \u2588\u2588\u2551\u255a\u2550\u2550\u2588\u2588\u2554\u2550\u2550\u255d\n     \u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588        \u2588\u2588\u2588\u2588\u2588\u2588\u2554\u255d\u2588\u2588\u2551   \u2588\u2588\u2551   \u2588\u2588\u2551\n   \u2588\u2588\u2588\u2588\u2588  \u2588\u2588\u2588\u2588\u2588      \u2588\u2588\u2554\u2550\u2550\u2588\u2588\u2557\u2588\u2588\u2551   \u2588\u2588\u2551   \u2588\u2588\u2551\n \u2588\u2588\u2588\u2588\u2588      \u2588\u2588\u2588\u2588\u2588    \u2588\u2588\u2588\u2588\u2588\u2588\u2554\u255d\u255a\u2588\u2588\u2588\u2588\u2588\u2588\u2554\u255d   \u2588\u2588\u2551\n\nThe command-line interface for GitButler\n\n$ but branch new <name>                       Create a new branch\n$ but status                                  View workspace status\n$ but commit -m <message>                     Commit changes to current branch\n$ but push                                    Push all branches\n$ but teardown                                Return to normal Git mode\n\nLearn more at https://docs.gitbutler.com/cli-overview",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:29:49.514Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"zk\",\n      \"filePath\": \".github/workflows/web-test.yml\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n    \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n    \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"John Watson\",\n    \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n      \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n      \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": null\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:29:53.150Z",
    "command": "but branch new add-claude-code-review",
    "but_subcommand": "branch",
    "description": "Create new branch",
    "output": "Initiated a background sync...\n\u2713 Created branch add-claude-code-review",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:30:25.751Z",
    "command": "but commit add-claude-code-review -c -m \"$(cat <<'EOF'\nAdd Claude code review to PR workflow\n\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\nthat automatically reviews PRs using Claude Code. The review runs\nafter lint/build passes and checks for code quality, CLAUDE.md\ncompliance, layered architecture import rules, Fresh 2 patterns,\nDDD principles, security issues, and test coverage.\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" --changes zk --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit the workflow change to the new branch",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"9e5c479a021d4f846b339dfb36b7ba6557be75ee\",\n    \"branch\": \"add-claude-code-review\",\n    \"branch_tip\": \"9e5c479a021d4f846b339dfb36b7ba6557be75ee\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"cl\",\n            \"name\": \"add-claude-code-review\",\n            \"commits\": [\n              {\n                \"cliId\": \"9e\",\n                \"commitId\": \"9e5c479a021d4f846b339dfb36b7ba6557be75ee\",\n                \"createdAt\": \"2026-02-24T22:30:29+00:00\",\n                \"message\": \"Add Claude code review to PR workflow\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n      \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n      \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n        \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n        \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"John Watson\",\n        \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T22:30:20.370+00:00\"\n    }\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:30:33.406Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push the branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:34:02.116Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check status for file IDs",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"zk\",\n      \"filePath\": \".github/workflows/web-test.yml\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [\n    {\n      \"cliId\": \"i0\",\n      \"assignedChanges\": [],\n      \"branches\": [\n        {\n          \"cliId\": \"cl\",\n          \"name\": \"add-claude-code-review\",\n          \"commits\": [\n            {\n              \"cliId\": \"9e\",\n              \"commitId\": \"9e5c479a021d4f846b339dfb36b7ba6557be75ee\",\n              \"createdAt\": \"2026-02-24T22:30:29+00:00\",\n              \"message\": \"Add Claude code review to PR workflow\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n              \"authorName\": \"stack72\",\n              \"authorEmail\": \"public@paulstack.co.uk\",\n              \"conflicted\": false,\n              \"reviewId\": null,\n              \"changes\": null\n            }\n          ],\n          \"upstreamCommits\": [],\n          \"branchStatus\": \"nothingToPush\",\n          \"reviewId\": null,\n          \"ci\": null\n        }\n      ]\n    }\n  ],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n    \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n    \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"John Watson\",\n    \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n      \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n      \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T22:30:20.370+00:00\"\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:34:05.949Z",
    "command": "but amend zk 9e --json --status-after",
    "but_subcommand": "amend",
    "description": "Amend the updated workflow into the existing commit",
    "output": "{\n  \"result\": {\n    \"ok\": true,\n    \"new_commit_id\": \"8f033872ffae555c6503494432e3fe0bade1cc44\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"cl\",\n            \"name\": \"add-claude-code-review\",\n            \"commits\": [\n              {\n                \"cliId\": \"8f\",\n                \"commitId\": \"8f033872ffae555c6503494432e3fe0bade1cc44\",\n                \"createdAt\": \"2026-02-24T22:30:29+00:00\",\n                \"message\": \"Add Claude code review to PR workflow\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"unpushedCommitsRequiringForce\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n      \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n      \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"e1b87e699a75f7f4c03cdc28621931500484055d\",\n        \"createdAt\": \"2026-02-24T21:03:50+00:00\",\n        \"message\": \"Add forgot/reset password flow (#43) (#48)\\n\\n* Fix email verification flow not updating session after verifying (#42)\\n\\nEnable requireEmailVerification and autoSignInAfterVerification in\\nBetterAuth config so verification emails are actually sent and the\\nsession cookie is refreshed after clicking the verification link.\\n\\nRework the check-email page to accept email/username query params\\ninstead of requiring a session (which doesn't exist when email\\nverification is required). Redirect unverified sign-in attempts to\\ncheck-email for both email and username login methods. Replace the\\nblind \\\"I've verified\\\" link with an API-backed verification check\\nthat gives user feedback and resurfaces the resend button on failure.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Fix formatting in ResendVerification and auth helpers\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n* Add forgot/reset password flow (#43)\\n\\nConfigure sendResetPassword callback in BetterAuth with Resend email\\nsupport and terminal fallback for local dev. Add forgot-password and\\nreset-password pages with matching cyberpunk design. The forgot form\\nsupports both email and username lookup \u2014 username resolution happens\\nserver-side via a custom /api/auth/request-reset endpoint so emails\\nare never exposed to the client.\\n\\nAlso adds \\\"forgot password?\\\" link to sign-in form, registers new\\nroutes in middleware allowlists and layout auth page list, and removes\\n\\\"instead\\\" from method toggle text across forms.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"John Watson\",\n        \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T22:30:20.370+00:00\"\n    }\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:34:12.402Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push the amended commit",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:40:38.802Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Get file IDs",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"zk\",\n      \"filePath\": \".github/workflows/web-test.yml\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"9f2314a1c3a21bc27d2a50cd8d3f16d9839eddf1\",\n    \"createdAt\": \"2026-02-24T22:37:11+00:00\",\n    \"message\": \"Add Claude code review to PR workflow (#54)\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"9f2314a1c3a21bc27d2a50cd8d3f16d9839eddf1\",\n      \"createdAt\": \"2026-02-24T22:37:11+00:00\",\n      \"message\": \"Add Claude code review to PR workflow (#54)\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T22:30:20.370+00:00\"\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:40:42.305Z",
    "command": "but branch new add-auto-merge",
    "but_subcommand": "branch",
    "description": "Create new branch for auto-merge",
    "output": "\u2713 Created branch add-auto-merge",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:43:11.962Z",
    "command": "but commit add-auto-merge -c -m \"$(cat <<'EOF'\nAdd auto-merge job to PR workflow\n\nAdd an auto-merge job that runs after both test and claude-review\npass. Uses gh pr merge --auto --squash to enable auto-merge when\nall checks and required approvals are satisfied. Skips fork PRs\nfor security and PRs with the 'hold' label.\n\nRequires UAT_TRIGGER_TOKEN secret for the merge operation.\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" --changes zk --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit auto-merge change",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"294432694254f8b696efc9afff370e7165213855\",\n    \"branch\": \"add-auto-merge\",\n    \"branch_tip\": \"294432694254f8b696efc9afff370e7165213855\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"au\",\n            \"name\": \"add-auto-merge\",\n            \"commits\": [\n              {\n                \"cliId\": \"29\",\n                \"commitId\": \"294432694254f8b696efc9afff370e7165213855\",\n                \"createdAt\": \"2026-02-24T22:43:15+00:00\",\n                \"message\": \"Add auto-merge job to PR workflow\\n\\nAdd an auto-merge job that runs after both test and claude-review\\npass. Uses gh pr merge --auto --squash to enable auto-merge when\\nall checks and required approvals are satisfied. Skips fork PRs\\nfor security and PRs with the 'hold' label.\\n\\nRequires UAT_TRIGGER_TOKEN secret for the merge operation.\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"9f2314a1c3a21bc27d2a50cd8d3f16d9839eddf1\",\n      \"createdAt\": \"2026-02-24T22:37:11+00:00\",\n      \"message\": \"Add Claude code review to PR workflow (#54)\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"9f2314a1c3a21bc27d2a50cd8d3f16d9839eddf1\",\n        \"createdAt\": \"2026-02-24T22:37:11+00:00\",\n        \"message\": \"Add Claude code review to PR workflow (#54)\\n\\nAdd a claude-review job to the web-test.yml GitHub Actions workflow\\nthat automatically reviews PRs using Claude Code. The review runs\\nafter lint/build passes and checks for code quality, CLAUDE.md\\ncompliance, layered architecture import rules, Fresh 2 patterns,\\nDDD principles, security issues, and test coverage.\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T22:30:20.370+00:00\"\n    }\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "e2eebc75-8c99-46d9-b022-7aa2589d2613",
    "project": "-Users-stack72-code-systeminit-swamp-club",
    "timestamp": "2026-02-24T22:43:17.718Z",
    "command": "but push",
    "but_subcommand": "push",
    "description": "Push the branch",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "01c5fcd4-e6a9-4ec1-8806-acca662e3f43",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:34:47.875Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check current GitButler status",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"qu\",\n      \"filePath\": \".claude/skills/swamp-extension-model/SKILL.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"pt\",\n      \"filePath\": \".claude/skills/swamp-extension-model/references/examples.md\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n    \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n    \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"John Watson\",\n    \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n      \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n      \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T22:08:03.658+00:00\"\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "01c5fcd4-e6a9-4ec1-8806-acca662e3f43",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:34:52.742Z",
    "command": "but branch new \"docs/extension-model-external-deps\"",
    "but_subcommand": "branch",
    "description": "Create new branch for the skill changes",
    "output": "Last fetch was 1h ago. Initiated a background sync...\n\u2713 Created branch docs/extension-model-external-deps",
    "is_error": false
  },
  {
    "session_id": "01c5fcd4-e6a9-4ec1-8806-acca662e3f43",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:35:03.607Z",
    "command": "but commit docs/extension-model-external-deps -c -m \"docs: document external dependency support in extension models\n\nThe extension model skill only mentioned importing zod, but the bundler\n(introduced in PR #452) resolves all Deno-compatible imports \u2014 npm:, jsr:,\nand https:// URLs. This was undocumented, so users (and Claude) had no\nguidance on using external packages in their models.\n\nAdd a 'Using External Dependencies' section to the examples reference with:\n- A verified lodash-es example showing npm: imports in action\n- How bundling works (deno bundle, mtime cache, zod externalization)\n- Import rules table covering all supported specifiers\n\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\nto the reference for details. Keeps SKILL.md lean per skill-creator\nguidelines.\" --changes qu,pt --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit both skill files to the new branch",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"9e11a50288e3017a17621665b1eeadc7f703cee5\",\n    \"branch\": \"docs/extension-model-external-deps\",\n    \"branch_tip\": \"9e11a50288e3017a17621665b1eeadc7f703cee5\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"do\",\n            \"name\": \"docs/extension-model-external-deps\",\n            \"commits\": [\n              {\n                \"cliId\": \"9e\",\n                \"commitId\": \"9e11a50288e3017a17621665b1eeadc7f703cee5\",\n                \"createdAt\": \"2026-02-24T23:35:03+00:00\",\n                \"message\": \"docs: document external dependency support in extension models\\n\\nThe extension model skill only mentioned importing zod, but the bundler\\n(introduced in PR #452) resolves all Deno-compatible imports \u2014 npm:, jsr:,\\nand https:// URLs. This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. Keeps SKILL.md lean per skill-creator\\nguidelines.\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n      \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n      \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n        \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n        \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"John Watson\",\n        \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
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This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. 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[1164 characters truncated] ...\n\n              \"commitId\": \"56cb940da87673c88a91a3091b257070ee967d14\",\n                \"createdAt\": \"2026-02-24T23:35:03+00:00\",\n                \"message\": \"docs: document external dependency support in extension models\\n\\nThe extension model skill only mentioned importing zod, but the bundler\\n(introduced in PR #452) resolves all Deno-compatible imports \u2014 npm:, jsr:,\\nand https:// URLs. This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. 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Commit '9e' not found. If you just performed a Git operation (squash, rebase, etc.), try running 'but status' to refresh the current state.",
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This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. Keeps SKILL.md lean per skill-creator\\nguidelines.\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"unpushedCommitsRequiringForce\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n      \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n      \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n        \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n        \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n        \"authorName\": \"John Watson\",\n        \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
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    "timestamp": "2026-02-24T23:36:42.298Z",
    "command": "but push do",
    "but_subcommand": "push",
    "description": "Force push amended commit",
    "output": "",
    "is_error": false
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    "session_id": "bfb8be22-2b38-4122-ab2b-b822e501d546",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:45:31.847Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check current GitButler status",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"tw\",\n      \"filePath\": \".claude/skills/swamp-data/SKILL.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"zl\",\n      \"filePath\": \".claude/skills/swamp-data/references/examples.md\",\n      \"changeType\": \"modified\"\n    },\n    {\n      \"cliId\": \"tp\",\n      \"filePath\": \".claude/skills/swamp-data/references/troubleshooting.md\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [\n    {\n      \"cliId\": \"u0\",\n      \"assignedChanges\": [],\n      \"branches\": [\n        {\n          \"cliId\": \"do\",\n          \"name\": \"docs/extension-model-external-deps\",\n          \"commits\": [\n            {\n              \"cliId\": \"1a\",\n              \"commitId\": \"1ae945b4216e24d20b5aab3b6d5dcb73654c85c5\",\n              \"createdAt\": \"2026-02-24T23:35:03+00:00\",\n              \"message\": \"docs: document external dependency support in extension models\\n\\nThe extension model skill only mentioned importing zod, but the bundler\\n(introduced in PR #452) resolves all Deno-compatible imports \u2014 npm:, jsr:,\\nand https:// URLs. This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. Keeps SKILL.md lean per skill-creator\\nguidelines.\",\n              \"authorName\": \"stack72\",\n              \"authorEmail\": \"public@paulstack.co.uk\",\n              \"conflicted\": false,\n              \"reviewId\": null,\n              \"changes\": null\n            }\n          ],\n          \"upstreamCommits\": [],\n          \"branchStatus\": \"nothingToPush\",\n          \"reviewId\": null,\n          \"ci\": null\n        }\n      ]\n    }\n  ],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n    \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n    \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n    \"authorName\": \"John Watson\",\n    \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n      \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n      \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n  }\n}",
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    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:45:37.855Z",
    "command": "but branch new fix/swamp-data-skill-accuracy",
    "but_subcommand": "branch",
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    "project": "-Users-stack72-code-systeminit-swamp",
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    "command": "but commit fix/swamp-data-skill-accuracy -c -m \"$(cat <<'EOF'\nfix: correct swamp-data skill to match actual CLI implementation\n\nThe swamp-data skill had numerous inaccuracies that caused Claude to\nuse wrong commands, flags, and field names when working with data.\nVerified every command, flag, argument, and JSON output shape against\nthe source code in src/cli/commands/data_*.ts and\nsrc/presentation/output/data_*_output.ts.\n\nSKILL.md fixes:\n- data search --type: added missing \"output\" type value\n- data get --no-content: documented undocumented flag\n- data list output shape: was wrong structure (data object \u2192 groups array)\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\n  ownerDefinition, size, checksum, content)\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\n  bytesReclaimed/dryRun/expiredEntries)\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\n\nreferences/troubleshooting.md:\n- gcSetting \u2192 garbageCollection field name\n\nreferences/examples.md:\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" --changes tw,zl,tp --json --status-after",
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This was undocumented, so users (and Claude) had no\\nguidance on using external packages in their models.\\n\\nAdd a 'Using External Dependencies' section to the examples reference with:\\n- A verified lodash-es example showing npm: imports in action\\n- How bundling works (deno bundle, mtime cache, zod externalization)\\n- Import rules table covering all supported specifiers\\n\\nUpdate SKILL.md Key Rules to mention external imports are supported, linking\\nto the reference for details. Keeps SKILL.md lean per skill-creator\\nguidelines.\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      },\n      {\n        \"cliId\": \"h0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"fi\",\n            \"name\": \"fix/swamp-data-skill-accuracy\",\n            \"commits\": [\n              {\n                \"cliId\": \"5f\",\n                \"commitId\": \"5f17f4446ef1e3856fd4655836c92b3105222e6c\",\n                \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n                \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"ec1a76d2118cffab124806e9c94532adc48f6bce\",\n      \"createdAt\": \"2026-02-24T22:57:22+00:00\",\n      \"message\": \"Add auth commands with browser-based login flow (#455)\\n\\n## Summary\\n\\n- Add `swamp auth login` \u2014 browser-based login (default) with stdin\\nfallback (`--username`/`--password` or `--no-browser`)\\n- Add `swamp auth whoami` \u2014 verify stored credentials against the server\\n- Add `swamp auth logout` \u2014 clear stored credentials from\\n`~/.swamp/auth.json`\\n- Add `SwampClubClient` for sign-in, API key creation, and whoami via\\n`Authorization: Bearer`\\n- Add ephemeral localhost callback server for receiving browser login\\nredirect\\n- Add cross-platform browser opener (macOS/Linux/Windows)\\n\\nDepends on\\n[systeminit/swamp-club#55](https://github.com/systeminit/swamp-club/pull/55)\\nfor server-side bearer auth and CLI login flow support.\\n\\n## Test Plan\\n\\n- `SWAMP_CLUB_URL=http://localhost:5173 deno run -A main.ts auth login`\\n\u2014 browser opens, sign in, CLI captures token\\n- `deno run -A main.ts auth whoami` \u2014 verifies stored API key works\\n- `deno run -A main.ts auth login --username X --password Y --server\\nhttp://localhost:5173` \u2014 stdin fallback\\n- `deno run -A main.ts auth login --no-browser` \u2014 forces stdin flow\\n- `deno run -A main.ts auth logout` \u2014 cleans up `~/.swamp/auth.json`\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\\n\\n---------\\n\\nCo-authored-by: Claude Opus 4.6 <noreply@anthropic.com>\",\n      \"authorName\": \"John Watson\",\n      \"authorEmail\": \"47694061+johnrwatson@users.noreply.github.com\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 1,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n        \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n        \"message\": \"docs: document external depend\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
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    "timestamp": "2026-02-24T23:45:53.520Z",
    "command": "but push fi",
    "but_subcommand": "push",
    "description": "Push the fix/swamp-data-skill-accuracy branch",
    "output": "",
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    "timestamp": "2026-02-24T23:47:29.297Z",
    "command": "but status --json",
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This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 0,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n      \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n      \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n  }\n}",
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    "session_id": "bfb8be22-2b38-4122-ab2b-b822e501d546",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:47:34.747Z",
    "command": "but amend tw 6a --json --status-after && but amend zl 6a --json --status-after",
    "but_subcommand": "amend",
    "description": "Amend formatting fixes into existing commit",
    "output": "Exit code 1\n{\n  \"result\": {\n    \"ok\": true,\n    \"new_commit_id\": \"a4af66c03ceb0ab2a10f2cca801e4f0d7550aa74\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [\n      {\n        \"cliId\": \"zl\",\n        \"filePath\": \".claude/skills/swamp-data/references/examples.md\",\n        \"changeType\": \"modified\"\n      }\n    ],\n    \"stacks\": [\n      {\n        \"cliId\": \"i0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"fi\",\n            \"name\": \"fix/swamp-data-skill-accuracy\",\n            \"commits\": [\n              {\n                \"cliId\": \"a4\",\n                \"commitId\": \"a4af66c03ceb0ab2a10f2cca801e4f0d7550aa74\",\n                \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n                \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"unpushedCommitsRequiringForce\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n      \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n      \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/c\n\n... [6124 characters truncated] ...\n\n-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n        \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n        \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}\nFailed to amend. Commit '6a' not found. If you just performed a Git operation (squash, rebase, etc.), try running 'but status' to refresh the current state.",
    "is_error": true
  },
  {
    "session_id": "bfb8be22-2b38-4122-ab2b-b822e501d546",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:47:42.094Z",
    "command": "but amend zl a4 --json --status-after",
    "but_subcommand": "amend",
    "description": "Amend examples.md formatting into commit",
    "output": "{\n  \"result\": {\n    \"ok\": true,\n    \"new_commit_id\": \"deafaa710bd8397bac65f058e6508aca8a53553f\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"fi\",\n            \"name\": \"fix/swamp-data-skill-accuracy\",\n            \"commits\": [\n              {\n                \"cliId\": \"de\",\n                \"commitId\": \"deafaa710bd8397bac65f058e6508aca8a53553f\",\n                \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n                \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"unpushedCommitsRequiringForce\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n      \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n      \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 0,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n        \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n        \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
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    "session_id": "bfb8be22-2b38-4122-ab2b-b822e501d546",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:47:48.779Z",
    "command": "but push fi",
    "but_subcommand": "push",
    "description": "Push amended branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:59:08.398Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"yt\",\n      \"filePath\": \".github/workflows/release.yml\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [\n    {\n      \"cliId\": \"i0\",\n      \"assignedChanges\": [],\n      \"branches\": [\n        {\n          \"cliId\": \"fi\",\n          \"name\": \"fix/swamp-data-skill-accuracy\",\n          \"commits\": [\n            {\n              \"cliId\": \"de\",\n              \"commitId\": \"deafaa710bd8397bac65f058e6508aca8a53553f\",\n              \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n              \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n              \"authorName\": \"stack72\",\n              \"authorEmail\": \"public@paulstack.co.uk\",\n              \"conflicted\": false,\n              \"reviewId\": null,\n              \"changes\": null\n            }\n          ],\n          \"upstreamCommits\": [],\n          \"branchStatus\": \"completelyUnpushed\",\n          \"reviewId\": null,\n          \"ci\": null\n        }\n      ]\n    }\n  ],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n    \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n    \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 1,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"3f2a302d44717863217a440a518c77eb85e07a12\",\n      \"createdAt\": \"2026-02-24T23:52:08+00:00\",\n      \"message\": \"fix: correct swamp-data skill \",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n  }\n}",
    "is_error": false
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  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:59:17.491Z",
    "command": "but commit i0 -c -m \"feat: add changelog to GitHub release notes\n\nPreviously, GitHub releases only contained static installation\ninstructions with no indication of what changed. Since each release\ncorresponds to a single merged PR, we now include the PR title and\nbody as a \\\"What's Changed\\\" section at the top of the release notes.\n\nChanges:\n- Add \\\"Generate release body\\\" step that builds release notes from\n  the merged PR title and body\n- Use env vars and printenv for safe handling of PR content that\n  may contain shell-unsafe characters (backticks, \\$, quotes)\n- Fall back to HEAD commit message for manual workflow_dispatch runs\n- Keep installation instructions below a separator\n- Use body_path instead of inline body for the release action\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\" --changes yt --json --status-after",
    "but_subcommand": "commit",
    "description": "Commit release.yml changes to a new branch",
    "output": "{\n  \"result\": {\n    \"commit_id\": \"ecef71355b6f5b1e677dbac09a07729a7189d237\",\n    \"branch\": \"i0\",\n    \"branch_tip\": \"ecef71355b6f5b1e677dbac09a07729a7189d237\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"fi\",\n            \"name\": \"fix/swamp-data-skill-accuracy\",\n            \"commits\": [\n              {\n                \"cliId\": \"de\",\n                \"commitId\": \"deafaa710bd8397bac65f058e6508aca8a53553f\",\n                \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n                \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      },\n      {\n        \"cliId\": \"h0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"i0\",\n            \"name\": \"i0\",\n            \"commits\": [\n              {\n                \"cliId\": \"ec\",\n                \"commitId\": \"ecef71355b6f5b1e677dbac09a07729a7189d237\",\n                \"createdAt\": \"2026-02-24T23:59:17+00:00\",\n                \"message\": \"feat: add changelog to GitHub release notes\\n\\nPreviously, GitHub releases only contained static installation\\ninstructions with no indication of what changed. Since each release\\ncorresponds to a single merged PR, we now include the PR title and\\nbody as a \\\"What's Changed\\\" section at the top of the release notes.\\n\\nChanges:\\n- Add \\\"Generate release body\\\" step that builds release notes from\\n  the merged PR title and body\\n- Use env vars and printenv for safe handling of PR content that\\n  may contain shell-unsafe characters (backticks, $, quotes)\\n- Fall back to HEAD commit message for manual workflow_dispatch runs\\n- Keep installation instructions below a separator\\n- Use body_path instead of inline body for the release action\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n      \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n      \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 1,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"3f2a302d44717863217a440a518c77eb85e07a12\",\n        \"createdAt\": \"2026-02-24T23:52:08+00:00\",\n        \"message\": \"fix: correct swamp-data skill \",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
    "is_error": false
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    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:59:20.954Z",
    "command": "but branch rename i0 feat/release-changelog --json",
    "but_subcommand": "branch",
    "description": "Rename branch to descriptive name",
    "output": "Exit code 2\nerror: unrecognized subcommand 'rename'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unrecognized subcommand 'rename'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:59:23.032Z",
    "command": "but branch --help",
    "but_subcommand": "branch",
    "description": "Check branch subcommands",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
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  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-24T23:59:24.818Z",
    "command": "but push i0",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T00:01:02.225Z",
    "command": "but status --json",
    "but_subcommand": "status",
    "description": "Check status for file IDs",
    "output": "{\n  \"unassignedChanges\": [\n    {\n      \"cliId\": \"yt\",\n      \"filePath\": \".github/workflows/release.yml\",\n      \"changeType\": \"modified\"\n    }\n  ],\n  \"stacks\": [\n    {\n      \"cliId\": \"j0\",\n      \"assignedChanges\": [],\n      \"branches\": [\n        {\n          \"cliId\": \"fi\",\n          \"name\": \"fix/swamp-data-skill-accuracy\",\n          \"commits\": [\n            {\n              \"cliId\": \"de\",\n              \"commitId\": \"deafaa710bd8397bac65f058e6508aca8a53553f\",\n              \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n              \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n              \"authorName\": \"stack72\",\n              \"authorEmail\": \"public@paulstack.co.uk\",\n              \"conflicted\": false,\n              \"reviewId\": null,\n              \"changes\": null\n            }\n          ],\n          \"upstreamCommits\": [],\n          \"branchStatus\": \"completelyUnpushed\",\n          \"reviewId\": null,\n          \"ci\": null\n        }\n      ]\n    },\n    {\n      \"cliId\": \"k0\",\n      \"assignedChanges\": [],\n      \"branches\": [\n        {\n          \"cliId\": \"i0\",\n          \"name\": \"i0\",\n          \"commits\": [\n            {\n              \"cliId\": \"ec\",\n              \"commitId\": \"ecef71355b6f5b1e677dbac09a07729a7189d237\",\n              \"createdAt\": \"2026-02-24T23:59:17+00:00\",\n              \"message\": \"feat: add changelog to GitHub release notes\\n\\nPreviously, GitHub releases only contained static installation\\ninstructions with no indication of what changed. Since each release\\ncorresponds to a single merged PR, we now include the PR title and\\nbody as a \\\"What's Changed\\\" section at the top of the release notes.\\n\\nChanges:\\n- Add \\\"Generate release body\\\" step that builds release notes from\\n  the merged PR title and body\\n- Use env vars and printenv for safe handling of PR content that\\n  may contain shell-unsafe characters (backticks, $, quotes)\\n- Fall back to HEAD commit message for manual workflow_dispatch runs\\n- Keep installation instructions below a separator\\n- Use body_path instead of inline body for the release action\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n              \"authorName\": \"stack72\",\n              \"authorEmail\": \"public@paulstack.co.uk\",\n              \"conflicted\": false,\n              \"reviewId\": null,\n              \"changes\": null\n            }\n          ],\n          \"upstreamCommits\": [],\n          \"branchStatus\": \"nothingToPush\",\n          \"reviewId\": null,\n          \"ci\": null\n        }\n      ]\n    }\n  ],\n  \"mergeBase\": {\n    \"cliId\": \"\",\n    \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n    \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n    \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n    \"authorName\": \"Paul Stack\",\n    \"authorEmail\": \"public@paulstack.co.uk\",\n    \"conflicted\": null,\n    \"reviewId\": null,\n    \"changes\": null\n  },\n  \"upstreamState\": {\n    \"behind\": 1,\n    \"latestCommit\": {\n      \"cliId\": \"\",\n      \"commitId\": \"3f2a302d44717863217a440a518c77eb85e07a12\",\n      \"createdAt\": \"2026-02-24T23:52:08+00:00\",\n      \"message\": \"fix: correct swamp-data skill \",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T00:01:04.892Z",
    "command": "but amend yt ec --json --status-after",
    "but_subcommand": "amend",
    "description": "Amend the fix into the existing commit",
    "output": "{\n  \"result\": {\n    \"ok\": true,\n    \"new_commit_id\": \"976f401c04dd08d00b3ab3b2fb1ecb84ca78d2cc\"\n  },\n  \"status\": {\n    \"unassignedChanges\": [],\n    \"stacks\": [\n      {\n        \"cliId\": \"g0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"fi\",\n            \"name\": \"fix/swamp-data-skill-accuracy\",\n            \"commits\": [\n              {\n                \"cliId\": \"de\",\n                \"commitId\": \"deafaa710bd8397bac65f058e6508aca8a53553f\",\n                \"createdAt\": \"2026-02-24T23:45:48+00:00\",\n                \"message\": \"fix: correct swamp-data skill to match actual CLI implementation\\n\\nThe swamp-data skill had numerous inaccuracies that caused Claude to\\nuse wrong commands, flags, and field names when working with data.\\nVerified every command, flag, argument, and JSON output shape against\\nthe source code in src/cli/commands/data_*.ts and\\nsrc/presentation/output/data_*_output.ts.\\n\\nSKILL.md fixes:\\n- data search --type: added missing \\\"output\\\" type value\\n- data get --no-content: documented undocumented flag\\n- data list output shape: was wrong structure (data object \u2192 groups array)\\n- data get output shape: wrong field names (model\u2192modelName, path\u2192contentPath)\\n  and missing fields (id, modelId, modelType, garbageCollection, streaming,\\n  ownerDefinition, size, checksum, content)\\n- data versions output shape: wrong fields (model\u2192modelName, name\u2192dataName),\\n  removed fabricated gcSetting/lifetime, added total/checksum/isLatest\\n- data gc --dry-run output: wrong structure (now expiredDataCount/expiredData)\\n- data gc run output: wrong structure (now dataEntriesExpired/versionsDeleted/\\n  bytesReclaimed/dryRun/expiredEntries)\\n- ownerDefinition fields: type\u2192ownerType, ref\u2192ownerRef\\n\\nreferences/troubleshooting.md:\\n- gcSetting \u2192 garbageCollection field name\\n\\nreferences/examples.md:\\n- GC preview output: expired/versions \u2192 expiredDataCount/expiredData\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"completelyUnpushed\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      },\n      {\n        \"cliId\": \"h0\",\n        \"assignedChanges\": [],\n        \"branches\": [\n          {\n            \"cliId\": \"i0\",\n            \"name\": \"i0\",\n            \"commits\": [\n              {\n                \"cliId\": \"97\",\n                \"commitId\": \"976f401c04dd08d00b3ab3b2fb1ecb84ca78d2cc\",\n                \"createdAt\": \"2026-02-24T23:59:17+00:00\",\n                \"message\": \"feat: add changelog to GitHub release notes\\n\\nPreviously, GitHub releases only contained static installation\\ninstructions with no indication of what changed. Since each release\\ncorresponds to a single merged PR, we now include the PR title and\\nbody as a \\\"What's Changed\\\" section at the top of the release notes.\\n\\nChanges:\\n- Add \\\"Generate release body\\\" step that builds release notes from\\n  the merged PR title and body\\n- Use env vars and printenv for safe handling of PR content that\\n  may contain shell-unsafe characters (backticks, $, quotes)\\n- Fall back to HEAD commit message for manual workflow_dispatch runs\\n- Keep installation instructions below a separator\\n- Use body_path instead of inline body for the release action\\n\\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\",\n                \"authorName\": \"stack72\",\n                \"authorEmail\": \"public@paulstack.co.uk\",\n                \"conflicted\": false,\n                \"reviewId\": null,\n                \"changes\": null\n              }\n            ],\n            \"upstreamCommits\": [],\n            \"branchStatus\": \"unpushedCommitsRequiringForce\",\n            \"reviewId\": null,\n            \"ci\": null\n          }\n        ]\n      }\n    ],\n    \"mergeBase\": {\n      \"cliId\": \"\",\n      \"commitId\": \"31c12b28b5353122591d60dfce0d5309924bdcbe\",\n      \"createdAt\": \"2026-02-24T23:40:26+00:00\",\n      \"message\": \"docs: document external dependency support in extension models (#456)\\n\\n## Summary\\n\\n- Document that extension models support all Deno-compatible imports\\n(`npm:`, `jsr:`, `https://`), not just `npm:zod@4`\\n- Add a verified `lodash-es` example showing npm package usage in a\\nmodel\\n- Explain how the bundling pipeline works (auto-bundle, mtime cache, zod\\nexternalization)\\n- Add import rules table covering all supported specifiers\\n\\n## Context\\n\\nPR #452 embedded the deno runtime and added `deno bundle` for extension\\nmodel\\ntranspilation. This made it possible for extension models to use any npm\\n(or\\njsr/https) dependency \u2014 the bundler resolves and inlines everything\\nexcept zod\\n(which is externalized to share `instanceof` checks with swamp).\\n\\nHowever, the `swamp-extension-model` skill only documented\\n`import { z } from \\\"npm:zod@4\\\"` as the sole import, giving the\\nimpression that\\nno other dependencies were available. Users and Claude had no guidance\\non how to\\nbring in external packages.\\n\\nAll three import specifiers were tested against the actual bundler:\\n- `npm:lodash-es` \u2014 bundles (298KB, 641 modules)\\n- `jsr:@std/path` \u2014 bundles (8.8KB, 73 modules)\\n- `https://deno.land/std@0.224.0/async/delay.ts` \u2014 bundles (1.2KB, 2\\nmodules)\\n\\n## Changes\\n\\n**`.claude/skills/swamp-extension-model/SKILL.md`**\\n- Updated Key Rules #2 to mention `npm:`, `jsr:`, `https://` imports\\nwith a\\n  link to the examples reference\\n\\n**`.claude/skills/swamp-extension-model/references/examples.md`**\\n- Added \\\"Using External Dependencies\\\" section with:\\n  - A complete, verified `lodash-es` text analyzer model example\\n- \\\"How bundling works\\\" explanation (deno bundle, mtime cache, zod\\nexternalization)\\n  - Import rules table showing what gets bundled vs externalized\\n- Updated table of contents with correct anchor link\\n\\n## Test plan\\n\\n- [ ] Verify the lodash-es example bundles: `deno bundle --external\\nnpm:zod@4 --external npm:zod --platform deno -o /tmp/test.js\\nextensions/models/text_analyzer.ts`\\n- [ ] Verify skill SKILL.md link to `#using-external-dependencies`\\nresolves correctly\\n- [ ] Review that SKILL.md stays lean (detail in references, per\\nskill-creator guidelines)\\n\\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\",\n      \"authorName\": \"Paul Stack\",\n      \"authorEmail\": \"public@paulstack.co.uk\",\n      \"conflicted\": null,\n      \"reviewId\": null,\n      \"changes\": null\n    },\n    \"upstreamState\": {\n      \"behind\": 1,\n      \"latestCommit\": {\n        \"cliId\": \"\",\n        \"commitId\": \"3f2a302d44717863217a440a518c77eb85e07a12\",\n        \"createdAt\": \"2026-02-24T23:52:08+00:00\",\n        \"message\": \"fix: correct swamp-data skill \",\n        \"authorName\": \"Paul Stack\",\n        \"authorEmail\": \"public@paulstack.co.uk\",\n        \"conflicted\": null,\n        \"reviewId\": null,\n        \"changes\": null\n      },\n      \"lastFetched\": \"2026-02-24T23:34:54.533+00:00\"\n    }\n  }\n}",
    "is_error": false
  },
  {
    "session_id": "96054603-529e-4bae-ad60-0bdcb8a898bf",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T00:01:14.411Z",
    "command": "but push i0",
    "but_subcommand": "push",
    "description": "Force push the amended commit",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:46:16.464Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "Last fetch was 14h ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   rn M src/cli/commands/model_method_run.ts \n\u250a\n\u2534 4c63442 [origin/main] 2026-02-25 fix: store auth.json in XDG config dir a\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:46:17.014Z",
    "command": "but diff",
    "but_subcommand": "diff",
    "description": "View current changes",
    "output": "\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nh0 src/cli/commands/model_method_run.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   377 377\u2502           model: definition.name,\n   378 378\u2502           error: errorMessage,\n   379 379\u2502         });\n   380    \u2502-        throw error;\n       380\u2502+        throw new UserError(errorMessage);\n   381 381\u2502       }\n   382 382\u2502 \n   383 383\u2502       // JSON mode: use existing render function",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:47:04.628Z",
    "command": "but branch new \"fix/hide-stack-traces-in-method-errors\"",
    "but_subcommand": "branch",
    "description": "Create new GitButler branch",
    "output": "\u2713 Created branch fix/hide-stack-traces-in-method-errors",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:47:08.725Z",
    "command": "but branch move --ownership h0",
    "but_subcommand": "branch",
    "description": "Move hunk to the new branch",
    "output": "Exit code 2\nerror: unrecognized subcommand 'move'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unrecognized subcommand 'move'\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:47:12.573Z",
    "command": "but branch --help",
    "but_subcommand": "branch",
    "description": "Check branch subcommands",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:47:18.991Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check current status after branch creation",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   rn M src/cli/commands/model_method_run.ts \n\u250a\n\u250a\u256d\u2504fi [fix/hide-stack-traces-in-method-errors] (no commits) \n\u251c\u256f\n\u250a\n\u2534 4c63442 [origin/main] 2026-02-25 fix: store auth.json in XDG config dir a\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:47:22.525Z",
    "command": "but stage src/cli/commands/model_method_run.ts --branch fix/hide-stack-traces-in-method-errors",
    "but_subcommand": "stage",
    "description": "Stage the changed file to the branch",
    "output": "Staged the only hunk in src/cli/commands/model_method_run.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:48:39.287Z",
    "command": "but commit -b fix/hide-stack-traces-in-method-errors -m \"$(cat <<'EOF'\nfix: wrap model method execution errors in UserError to hide stack traces (#463)\n\nCo-authored-by: Blake Irvin <bixu@users.noreply.github.com>\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit the change with co-authors",
    "output": "Exit code 2\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:48:42.294Z",
    "command": "but commit --help",
    "but_subcommand": "commit",
    "description": "Check commit syntax",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created\n\n  -j, --json\n          Whether to use JSON output format\n\n  -o, --only\n          Only commit staged files, not unstaged files\n\n  -n, --no-hooks\n          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:48:45.981Z",
    "command": "but commit fix/hide-stack-traces-in-method-errors -m \"$(cat <<'EOF'\nfix: wrap model method execution errors in UserError to hide stack traces (#463)\n\nCo-authored-by: Blake Irvin <bixu@users.noreply.github.com>\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit with branch as positional arg",
    "output": "\u2713 Created commit 70673bf on branch fix/hide-stack-traces-in-method-errors",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:48:49.550Z",
    "command": "but push fix/hide-stack-traces-in-method-errors",
    "but_subcommand": "push",
    "description": "Push the branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:54:19.953Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   ros M src/cli/commands/auth_login.ts \n\u250a    rn M src/cli/commands/model_method_run.ts \n\u250a    pw M src/cli/commands/vault_edit.ts \n\u250a    zk M src/cli/commands/workflow_evaluate.ts \n\u250a    rw M src/cli/commands/workflow_run.ts \n\u250a    vv M src/cli/input_parser.ts \n\u250a\n\u250a\u256d\u2504fi [fix/hide-stack-traces-in-method-errors]  \n\u250a\u25cf   70673bf fix: wrap model method execution errors in UserErr  \n\u251c\u256f\n\u250a\n\u2534 4c63442 [origin/main] 2026-02-25 fix: store auth.json in XDG config dir a\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:54:23.752Z",
    "command": "but stage ros,rn,pw,zk,rw,vv --branch fix/hide-stack-traces-in-method-errors",
    "but_subcommand": "stage",
    "description": "Stage all changed files to the branch",
    "output": "Staged the only hunk in src/cli/commands/auth_login.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].\nStaged the only hunk in src/cli/commands/model_method_run.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].\nStaged the only hunk in src/cli/commands/vault_edit.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].\nStaged all hunks in src/cli/commands/workflow_evaluate.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].\nStaged the only hunk in src/cli/commands/workflow_run.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].\nStaged all hunks in src/cli/input_parser.ts in the unassigned area \u2192 [fix/hide-stack-traces-in-method-errors].",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:56:22.522Z",
    "command": "but commit fix/hide-stack-traces-in-method-errors -m \"$(cat <<'EOF'\nfix: audit and wrap all CLI errors in UserError to hide stack traces\n\nComprehensive audit of all CLI commands to ensure no stack traces leak\nto users. Converts all user-facing errors (validation failures, not-found,\ninput parsing) from bare Error to UserError across the entire CLI layer.\n\nFiles changed:\n- src/cli/commands/workflow_evaluate.ts: 2 bare Error \u2192 UserError\n- src/cli/commands/model_method_run.ts: 1 bare Error \u2192 UserError\n- src/cli/commands/workflow_run.ts: 1 bare Error \u2192 UserError\n- src/cli/commands/vault_edit.ts: wrap re-thrown fs error\n- src/cli/commands/auth_login.ts: wrap re-thrown browser error\n- src/cli/input_parser.ts: 7 bare Error \u2192 UserError (shared input parsing)\n\nCloses #463\n\nCo-authored-by: Blake Irvin <bixu@users.noreply.github.com>\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit the audit fixes",
    "output": "\u2713 Created commit 302537b on branch fix/hide-stack-traces-in-method-errors",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T13:56:26.279Z",
    "command": "but push fix/hide-stack-traces-in-method-errors",
    "but_subcommand": "push",
    "description": "Push the branch",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:06:26.324Z",
    "command": "but status",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "Last fetch was 20m ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   ox M scripts/download_deno.ts \n\u250a\n\u250a\u25cf 685c7d3 (upstream) \u23eb 1 new commits (checked 20 minutes ago)\n\u251c\u256f 3e08e74 [origin/main] 2026-02-25 fix: hide stack traces in method executi\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:06:30.397Z",
    "command": "but branch new \"fix/strip-deno-version-build-metadata\"",
    "but_subcommand": "branch",
    "description": "Create new branch",
    "output": "\u2713 Created branch fix/strip-deno-version-build-metadata",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:06:34.498Z",
    "command": "but stage ox --branch fix/strip-deno-version-build-metadata",
    "but_subcommand": "stage",
    "description": "Stage the change",
    "output": "The user doesn't want to proceed with this tool use. The tool use was rejected (eg. if it was a file edit, the new_string was NOT written to the file). STOP what you are doing and wait for the user to tell you how to proceed.",
    "is_error": true
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:07:38.440Z",
    "command": "but stage ox --branch fix/strip-deno-version-build-metadata",
    "but_subcommand": "stage",
    "description": "Stage the change",
    "output": "Staged the only hunk in scripts/download_deno.ts in the unassigned area \u2192 [fix/strip-deno-version-build-metadata].",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:08:37.825Z",
    "command": "but commit fix/strip-deno-version-build-metadata -m \"$(cat <<'EOF'\nfix: strip build metadata from deno version when downloading embedded runtime\n\nDeno 2.7.0 introduced build metadata in its version string (e.g.\n\"2.7.0+fb4db33\"), but GitHub releases use tags without it (\"v2.7.0\").\nThe download_deno.ts script was using the full version string to\nconstruct the download URL, resulting in a 404.\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\"",
    "but_subcommand": "commit",
    "description": "Commit the fix",
    "output": "\u2713 Created commit 1295bb7 on branch fix/strip-deno-version-build-metadata",
    "is_error": false
  },
  {
    "session_id": "8c914317-f1b6-4ac6-a13c-089d81f6a4d9",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T14:08:42.112Z",
    "command": "but push fix/strip-deno-version-build-metadata",
    "but_subcommand": "push",
    "description": "Push the branch",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:01.602Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check GitButler status",
    "output": "Last fetch was 1h ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   vx M src/cli/commands/repo_init.ts \n\u250a   zm M src/domain/repo/repo_service.ts \n\u250a   vu M src/domain/repo/repo_service_test.ts \n\u250a   tm M src/presentation/output/repo_output.ts \n\u250a\n\u2534 2ad5260 [origin/main] 2026-02-25 fix: coerce --input string values to mat\n\nHint: run `but branch new` to create a new branch to work on",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:05.008Z",
    "command": "but branch new \"fix/managed-gitignore-section\" 2>&1",
    "but_subcommand": "branch",
    "description": "Create new GitButler branch",
    "output": "\u2713 Created branch fix/managed-gitignore-section",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:07.711Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check status after branch creation",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   vx M src/cli/commands/repo_init.ts \n\u250a   zm M src/domain/repo/repo_service.ts \n\u250a   vu M src/domain/repo/repo_service_test.ts \n\u250a   tm M src/presentation/output/repo_output.ts \n\u250a\n\u250a\u256d\u2504fi [fix/managed-gitignore-section] (no commits) \n\u251c\u256f\n\u250a\n\u2534 2ad5260 [origin/main] 2026-02-25 fix: coerce --input string values to mat\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:10.804Z",
    "command": "but stage src/cli/commands/repo_init.ts src/domain/repo/repo_service.ts src/domain/repo/repo_service_test.ts src/presentation/output/repo_output.ts --branch fix/managed-gitignore-section 2>&1",
    "but_subcommand": "stage",
    "description": "Stage all changed files to branch",
    "output": "Exit code 2\nerror: unexpected argument 'src/domain/repo/repo_service_test.ts' found\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.\n\nerror: unexpected argument 'src/domain/repo/repo_service_test.ts' found\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:23.096Z",
    "command": "but stage src/cli/commands/repo_init.ts --branch fix/managed-gitignore-section 2>&1 && but stage src/domain/repo/repo_service.ts --branch fix/managed-gitignore-section 2>&1 && but stage src/domain/repo/repo_service_test.ts --branch fix/managed-gitignore-section 2>&1 && but stage src/presentation/output/repo_output.ts --branch fix/managed-gitignore-section 2>&1",
    "but_subcommand": "stage",
    "description": "Stage files one at a time",
    "output": "Staged all hunks in src/cli/commands/repo_init.ts in the unassigned area \u2192 [fix/managed-gitignore-section].\n\nStaged all hunks in src/domain/repo/repo_service.ts in the unassigned area \u2192 [fix/managed-gitignore-section].\n\nStaged all hunks in src/domain/repo/repo_service_test.ts in the unassigned area \u2192 [fix/managed-gitignore-section].\n\nStaged all hunks in src/presentation/output/repo_output.ts in the unassigned area \u2192 [fix/managed-gitignore-section].",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:36.815Z",
    "command": "but commit --branch fix/managed-gitignore-section -m \"$(cat <<'EOF'\nfix: manage a swamp section in existing .gitignore files (#461)\n\nPreviously, `swamp repo init` and `swamp repo upgrade` would skip\n`.gitignore` entirely if one already existed. This meant repos with an\nexisting `.gitignore` (the common case) never got swamp's required\nentries added, and upgrades could never deliver new gitignore entries.\n\nUse sentinel comment markers (BEGIN/END) to delimit a swamp-managed\nsection within any `.gitignore`. Content outside the markers is never\ntouched.\n\nHandles four scenarios:\n- No `.gitignore` exists: create one with the managed section\n- `.gitignore` exists without swamp section: append the managed section\n- `.gitignore` exists with managed section: replace if content differs\n- `.gitignore` has legacy format (pre-marker): migrate to managed section\n\nAlso changes `gitignoreCreated: boolean` to `gitignoreAction: string`\n(\"created\" | \"updated\" | \"unchanged\") in the JSON output for both\n`repo init` and `repo upgrade` commands.\n\nCo-authored-by: Blake Irvin <blakeirvin@me.com>\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit changes with detailed message",
    "output": "Exit code 2\nerror: unexpected argument '--branch' found\n\n  tip: to pass '--branch' as a value, use '-- --branch'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '--branch' found\n\n  tip: to pass '--branch' as a value, use '-- --branch'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:42.384Z",
    "command": "but commit fix/managed-gitignore-section -m \"$(cat <<'EOF'\nfix: manage a swamp section in existing .gitignore files (#461)\n\nPreviously, `swamp repo init` and `swamp repo upgrade` would skip\n`.gitignore` entirely if one already existed. This meant repos with an\nexisting `.gitignore` (the common case) never got swamp's required\nentries added, and upgrades could never deliver new gitignore entries.\n\nUse sentinel comment markers (BEGIN/END) to delimit a swamp-managed\nsection within any `.gitignore`. Content outside the markers is never\ntouched.\n\nHandles four scenarios:\n- No `.gitignore` exists: create one with the managed section\n- `.gitignore` exists without swamp section: append the managed section\n- `.gitignore` exists with managed section: replace if content differs\n- `.gitignore` has legacy format (pre-marker): migrate to managed section\n\nAlso changes `gitignoreCreated: boolean` to `gitignoreAction: string`\n(\"created\" | \"updated\" | \"unchanged\") in the JSON output for both\n`repo init` and `repo upgrade` commands.\n\nCo-authored-by: Blake Irvin <blakeirvin@me.com>\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit with branch as positional arg",
    "output": "\u2713 Created commit b1eb1d3 on branch fix/managed-gitignore-section",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:45.247Z",
    "command": "but push fix/managed-gitignore-section 2>&1",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "7124f6ce-8d3e-48de-bdf5-86355d093e95",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T15:08:50.857Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check status after push",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a     no changes\n\u250a\n\u250a\u256d\u2504fi [fix/managed-gitignore-section]  \n\u250a\u25cf   b1eb1d3 fix: manage a swamp section in existing .gitignore  \n\u251c\u256f\n\u250a\n\u2534 2ad5260 [origin/main] 2026-02-25 fix: coerce --input string values to mat\n\nHint: run `but help` for all commands",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:10:22.085Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check GitButler workspace status",
    "output": "Last fetch was 1h ago. Initiated a background sync...\n\u256d\u2504zz [unstaged changes] \n\u250a   vx M src/cli/commands/repo_init.ts \n\u250a   zm M src/domain/repo/repo_service.ts \ud83d\udd12 b1eb1d3\n\u250a   vu M src/domain/repo/repo_service_test.ts \ud83d\udd12 b1eb1d3\n\u250a   ks M src/infrastructure/persistence/repo_marker_repository.ts \n\u250a\n\u250a\u256d\u2504fi [fix/managed-gitignore-section]  \n\u250a\u25cf   b1eb1d3 fix: manage a swamp section in existing .gitignore  \n\u251c\u256f\n\u250a\n\u250a\u25cf 9faeb31 (upstream) \u23eb 3 new commits (checked 1 hour ago)\n\u251c\u256f 2ad5260 [origin/main] 2026-02-25 fix: coerce --input string values to mat\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:10:24.896Z",
    "command": "but diff 2>&1",
    "but_subcommand": "diff",
    "description": "View uncommitted changes",
    "output": "\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\no1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   46 46\u2502   const repoPath = RepoPath.create(pathArg ?? \".\");\n   47 47\u2502   const service = new RepoService(VERSION);\n   48 48\u2502   const tool = (options.tool as AiTool) ?? \"claude\";\n   49   \u2502-\n   50   \u2502-  const result = await service.init(repoPath, { force: options.force, tool });\n      49\u2502+  const includeGitignore = options.includeGitignore as boolean | undefined;\n      50\u2502+\n      51\u2502+  const result = await service.init(repoPath, {\n      52\u2502+    force: options.force,\n      53\u2502+    tool,\n      54\u2502+    includeGitignore,\n      55\u2502+  });\n   51 56\u2502 \n   52 57\u2502   ctx.logger.debug`Repository initialized: ${result.path}`;\n   53 58\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\np1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   76 81\u2502     \"AI coding tool to configure for (claude, cursor, opencode, codex)\",\n   77 82\u2502     { default: \"claude\" },\n   78 83\u2502   )\n      84\u2502+  .option(\"--include-gitignore\", \"Manage a swamp section in .gitignore\")\n   79 85\u2502   .action(repoInitAction);\n   80 86\u2502 \n   81 87\u2502 export const repoUpgradeCommand = new Command()\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nq1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   86 92\u2502     \"-t, --tool <tool:aiTool>\",\n   87 93\u2502     \"Switch to a different AI coding tool\",\n   88 94\u2502   )\n      95\u2502+  .option(\"--include-gitignore\", \"Manage a swamp section in .gitignore\")\n   89 96\u2502   .action(async function (options: AnyOptions, pathArg?: string) {\n   90 97\u2502     const ctx = createContext(options as GlobalOptions, [\"repo\", \"upgrade\"]);\n   91 98\u2502     ctx.logger.debug`Upgrading repository at: ${pathArg ?? \".\"}`;\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nr1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n    93 100\u2502     const repoPath = RepoPath.create(pathArg ?? \".\");\n    94 101\u2502     const service = new RepoService(VERSION);\n    95 102\u2502     const tool = options.tool as AiTool | undefined;\n       103\u2502+    const includeGitignore = options.includeGitignore as boolean | undefined;\n    96 104\u2502 \n    97    \u2502-    const result = await service.upgrade(repoPath, { tool });\n       105\u2502+    const result = await service.upgrade(repoPath, {\n       106\u2502+      tool,\n       107\u2502+      includeGitignore,\n       108\u2502+    });\n    98 109\u2502 \n    99 110\u2502     ctx.logger.debug`Repository upgraded: ${result.path}`;\n   100 111\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ns1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   124 135\u2502     \"AI coding tool to configure for (claude, cursor, opencode, codex)\",\n   125 136\u2502     { default: \"claude\" },\n   126 137\u2502   )\n       138\u2502+  .option(\"--include-gitignore\", \"Manage a swamp section in .gitignore\")\n   127 139\u2502   .action(repoInitAction)\n   128 140\u2502   .command(\n   129 141\u2502     \"init\",\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nt1 src/cli/commands/repo_init.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   138 150\u2502         \"AI coding tool to configure for (claude, cursor, opencode, codex)\",\n   139 151\u2502         { default: \"claude\" },\n   140 152\u2502       )\n       153\u2502+      .option(\"--include-gitignore\", \"Manage a swamp section in .gitignore\")\n   141 154\u2502       .action(repoInitAction),\n   142 155\u2502   )\n   143 156\u2502   .command(\"upgrade\", repoUpgradeCommand)\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nu1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   46 46\u2502  * - \"created\": a new .gitignore file was created with the managed section\n   47 47\u2502  * - \"updated\": an existing .gitignore had its managed section added or refreshed\n   48 48\u2502  * - \"unchanged\": the managed section already existed and was up-to-date\n      49\u2502+ * - \"skipped\": gitignore management was not opted in\n   49 50\u2502  */\n   50   \u2502-export type GitignoreAction = \"created\" | \"updated\" | \"unchanged\";\n      51\u2502+export type GitignoreAction = \"created\" | \"updated\" | \"unchanged\" | \"skipped\";\n   51 52\u2502 \n   52 53\u2502 const SKILL_DIRS: Record<AiTool, string> = {\n   53 54\u2502   claude: \".claude/skills\",\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nv1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   104 105\u2502 export interface RepoInitOptions {\n   105 106\u2502   force?: boolean;\n   106 107\u2502   tool?: AiTool;\n       108\u2502+  includeGitignore?: boolean;\n   107 109\u2502 }\n   108 110\u2502 \n   109 111\u2502 /**\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nw1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   111 113\u2502  */\n   112 114\u2502 export interface RepoUpgradeOptions {\n   113 115\u2502   tool?: AiTool;\n       116\u2502+  includeGitignore?: boolean;\n   114 117\u2502 }\n   115 118\u2502 \n   116 119\u2502 /**\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nx1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   160 163\u2502     // Create marker file with tool choice\n   161 164\u2502     const markerData = this.markerRepo.createInitMarker(this.currentVersion);\n   162 165\u2502     markerData.tool = tool;\n   163    \u2502-    await this.markerRepo.write(repoPath, markerData);\n   164 166\u2502 \n   165 167\u2502     // Create data directory structure\n   166 168\u2502     await this.createDataDirectoryStructure(repoPath);\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ny1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   180 182\u2502       settingsCreated = await this.createClaudeSettingsIfNotExists(repoPath);\n   181 183\u2502     }\n   182 184\u2502 \n   183    \u2502-    // Ensure .gitignore has swamp managed section\n   184    \u2502-    const gitignoreAction = await this.ensureGitignoreSection(\n   185    \u2502-      repoPath,\n   186    \u2502-      tool,\n   187    \u2502-    );\n       185\u2502+    // Manage .gitignore only when opted in\n       186\u2502+    let gitignoreAction: GitignoreAction;\n       187\u2502+    if (options.includeGitignore) {\n       188\u2502+      gitignoreAction = await this.ensureGitignoreSection(repoPath, tool);\n       189\u2502+      markerData.gitignoreManaged = true;\n       190\u2502+    } else {\n       191\u2502+      gitignoreAction = \"skipped\";\n       192\u2502+    }\n       193\u2502+\n       194\u2502+    await this.markerRepo.write(repoPath, markerData);\n   188 195\u2502 \n   189 196\u2502     return {\n   190 197\u2502       path: repoPath.value,\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nz1 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   227 234\u2502       this.currentVersion,\n   228 235\u2502     );\n   229 236\u2502     updatedMarker.tool = tool;\n   230    \u2502-    await this.markerRepo.write(repoPath, updatedMarker);\n   231 237\u2502 \n   232 238\u2502     // Update skills in tool-appropriate directory\n   233 239\u2502     const skillsDir = join(repoPath.value, SKILL_DIRS[tool]);\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ng2 src/domain/repo/repo_service.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   243 249\u2502       settingsUpdated = await this.updateClaudeSettings(repoPath);\n   244 250\u2502     }\n   245 251\u2502 \n   246    \u2502-    // Ensure .gitignore has swamp managed section\n   247    \u2502-    const gitignoreAction = await this.ensureGitignoreSection(\n   248    \u2502-      repoPath,\n   249    \u2502-      tool,\n   250    \u2502-    );\n       252\u2502+    // Determine gitignore management: CLI flag > marker preference > default off\n       253\u2502+    const shouldManageGitignore = options.includeGitignore ??\n       254\u2502+      existingMarker.gitignoreManaged ?? false;\n       255\u2502+\n       256\u2502+    // Persist the CLI flag choice if explicitly provided\n       257\u2502+    if (options.includeGitignore !== undefined) {\n       258\u2502+      updatedMarker.gitignoreManaged = options.includeGitignore;\n       259\u2502+    }\n       260\u2502+\n       261\u2502+    let gitignoreAction: GitignoreAction;\n       262\u2502+    if (shouldManageGitignore) {\n       263\u2502+      gitignoreAction = await this.ensureGitignoreSection(repoPath, tool);\n       264\u2502+    } else {\n       265\u2502+      gitignoreAction = \"skipped\";\n       266\u2502+    }\n       267\u2502+\n       268\u2502+    await this.markerRepo.write(repoPath, updatedMarker);\n   251 269\u2502 \n   252 270\u2502     // createUpgradeMarker always sets upgradedAt, but TypeScript doesn't know this\n   253 271\u2502     if (!updatedMarker.upgradedAt) {\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nl0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   403 403\u2502   });\n   404 404\u2502 });\n   405 405\u2502 \n   406    \u2502-Deno.test(\"RepoService.init creates .gitignore with managed section\", async () => {\n       406\u2502+Deno.test(\"RepoService.init skips .gitignore by default\", async () => {\n   407 407\u2502   await withTempDir(async (tempDir) => {\n   408 408\u2502     const service = new RepoService(\"0.1.0\");\n   409 409\u2502     const repoPath = RepoPath.create(tempDir);\n   410 410\u2502 \n   411 411\u2502     const result = await service.init(repoPath);\n   412 412\u2502 \n       413\u2502+    assertEquals(result.gitignoreAction, \"skipped\");\n       414\u2502+\n       415\u2502+    // .gitignore should not exist\n       416\u2502+    const gitignorePath = join(tempDir, \".gitignore\");\n       417\u2502+    let exists = false;\n       418\u2502+    try {\n       419\u2502+      await Deno.stat(gitignorePath);\n       420\u2502+      exists = true;\n       421\u2502+    } catch {\n       422\u2502+      // expected\n       423\u2502+    }\n       424\u2502+    assertEquals(exists, false);\n       425\u2502+  });\n       426\u2502+});\n       427\u2502+\n       428\u2502+Deno.test(\"RepoService.init creates .gitignore with managed section when opted in\", async () => {\n       429\u2502+  await withTempDir(async (tempDir) => {\n       430\u2502+    const service = new RepoService(\"0.1.0\");\n       431\u2502+    const repoPath = RepoPath.create(tempDir);\n       432\u2502+\n       433\u2502+    const result = await service.init(repoPath, { includeGitignore: true });\n       434\u2502+\n   413 435\u2502     assertEquals(result.gitignoreAction, \"created\");\n   414 436\u2502 \n   415 437\u2502     // Check .gitignore exists and has expected content with markers\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nm0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   423 445\u2502     assertStringIncludes(content, \".swamp/telemetry/\");\n   424 446\u2502     assertStringIncludes(content, \".swamp/secrets/keyfile\");\n   425 447\u2502     assertStringIncludes(content, \".claude/\");\n       448\u2502+\n       449\u2502+    // Check marker persists the preference\n       450\u2502+    const marker = await service.getMarker(repoPath);\n       451\u2502+    assertEquals(marker!.gitignoreManaged, true);\n   426 452\u2502   });\n   427 453\u2502 });\n   428 454\u2502 \n   429    \u2502-Deno.test(\"RepoService.init appends managed section to existing .gitignore\", async () => {\n       455\u2502+Deno.test(\"RepoService.init appends managed section to existing .gitignore when opted in\", async () => {\n   430 456\u2502   await withTempDir(async (tempDir) => {\n   431 457\u2502     // Create existing .gitignore\n   432 458\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nn0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   438 464\u2502     const service = new RepoService(\"0.1.0\");\n   439 465\u2502     const repoPath = RepoPath.create(tempDir);\n   440 466\u2502 \n   441    \u2502-    const result = await service.init(repoPath);\n       467\u2502+    const result = await service.init(repoPath, { includeGitignore: true });\n   442 468\u2502 \n   443 469\u2502     assertEquals(result.gitignoreAction, \"updated\");\n   444 470\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\no0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   461 487\u2502     const repoPath = RepoPath.create(tempDir);\n   462 488\u2502 \n   463 489\u2502     // First init creates .gitignore with managed section\n   464    \u2502-    await service.init(repoPath);\n       490\u2502+    await service.init(repoPath, { includeGitignore: true });\n   465 491\u2502 \n   466 492\u2502     // Second init with force \u2014 section already matches\n   467    \u2502-    const result = await service.init(repoPath, { force: true });\n       493\u2502+    const result = await service.init(repoPath, {\n       494\u2502+      force: true,\n       495\u2502+      includeGitignore: true,\n       496\u2502+    });\n   468 497\u2502 \n   469 498\u2502     assertEquals(result.gitignoreAction, \"unchanged\");\n   470 499\u2502   });\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\np0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   482 511\u2502     assertEquals(result.tool, \"cursor\");\n   483 512\u2502     assertEquals(result.instructionsFileCreated, true);\n   484 513\u2502     assertEquals(result.settingsCreated, false);\n       514\u2502+    assertEquals(result.gitignoreAction, \"skipped\");\n   485 515\u2502 \n   486 516\u2502     // Check skills copied to .cursor/skills/\n   487 517\u2502     const skillsDir = join(tempDir, \".cursor\", \"skills\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nq0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   494 524\u2502     assertStringIncludes(content, \"alwaysApply: true\");\n   495 525\u2502     assertStringIncludes(content, \"swamp\");\n   496 526\u2502     assertStringIncludes(content, \"## Skills\");\n   497    \u2502-\n   498    \u2502-    // Check .gitignore has cursor-specific entries\n   499    \u2502-    const gitignorePath = join(tempDir, \".gitignore\");\n   500    \u2502-    const gitignoreContent = await Deno.readTextFile(gitignorePath);\n   501    \u2502-    assertStringIncludes(gitignoreContent, \".cursor/skills/\");\n   502 527\u2502 \n   503 528\u2502     // Check no .claude/ settings created\n   504 529\u2502     const claudeSettingsPath = join(\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nr0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   527 552\u2502     assertEquals(result.tool, \"opencode\");\n   528 553\u2502     assertEquals(result.instructionsFileCreated, true);\n   529 554\u2502     assertEquals(result.settingsCreated, false);\n       555\u2502+    assertEquals(result.gitignoreAction, \"skipped\");\n   530 556\u2502 \n   531 557\u2502     // Check skills copied to .agents/skills/\n   532 558\u2502     const skillsDir = join(tempDir, \".agents\", \"skills\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ns0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   538 564\u2502     const content = await Deno.readTextFile(agentsMdPath);\n   539 565\u2502     assertStringIncludes(content, \"swamp\");\n   540 566\u2502     assertStringIncludes(content, \"## Skills\");\n   541    \u2502-\n   542    \u2502-    // Check .gitignore has agents-specific entries\n   543    \u2502-    const gitignorePath = join(tempDir, \".gitignore\");\n   544    \u2502-    const gitignoreContent = await Deno.readTextFile(gitignorePath);\n   545    \u2502-    assertStringIncludes(gitignoreContent, \".agents/skills/\");\n   546 567\u2502   });\n   547 568\u2502 });\n   548 569\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nt0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   556 577\u2502     assertEquals(result.tool, \"codex\");\n   557 578\u2502     assertEquals(result.instructionsFileCreated, true);\n   558 579\u2502     assertEquals(result.settingsCreated, false);\n       580\u2502+    assertEquals(result.gitignoreAction, \"skipped\");\n   559 581\u2502 \n   560 582\u2502     // Check skills copied to .agents/skills/\n   561 583\u2502     const skillsDir = join(tempDir, \".agents\", \"skills\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nu0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   566 588\u2502     const agentsMdPath = join(tempDir, \"AGENTS.md\");\n   567 589\u2502     const content = await Deno.readTextFile(agentsMdPath);\n   568 590\u2502     assertStringIncludes(content, \"swamp\");\n   569    \u2502-\n   570    \u2502-    // Check .gitignore has agents-specific entries\n   571    \u2502-    const gitignorePath = join(tempDir, \".gitignore\");\n   572    \u2502-    const gitignoreContent = await Deno.readTextFile(gitignorePath);\n   573    \u2502-    assertStringIncludes(gitignoreContent, \".agents/skills/\");\n   574 591\u2502   });\n   575 592\u2502 });\n   576 593\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nv0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   723 740\u2502   });\n   724 741\u2502 });\n   725 742\u2502 \n   726    \u2502-Deno.test(\"RepoService.upgrade creates .gitignore if missing\", async () => {\n       743\u2502+Deno.test(\"RepoService.upgrade skips .gitignore by default\", async () => {\n   727 744\u2502   await withTempDir(async (tempDir) => {\n   728 745\u2502     const service = new RepoService(\"0.1.0\");\n   729 746\u2502     const repoPath = RepoPath.create(tempDir);\n   730 747\u2502 \n   731    \u2502-    // Init (creates .gitignore), then delete it\n   732 748\u2502     await service.init(repoPath);\n       749\u2502+\n       750\u2502+    const upgradeService = new RepoService(\"0.2.0\");\n       751\u2502+    const result = await upgradeService.upgrade(repoPath);\n       752\u2502+\n       753\u2502+    assertEquals(result.gitignoreAction, \"skipped\");\n       754\u2502+  });\n       755\u2502+});\n       756\u2502+\n       757\u2502+Deno.test(\"RepoService.upgrade creates .gitignore when marker has gitignoreManaged\", async () => {\n       758\u2502+  await withTempDir(async (tempDir) => {\n       759\u2502+    const service = new RepoService(\"0.1.0\");\n       760\u2502+    const repoPath = RepoPath.create(tempDir);\n       761\u2502+\n       762\u2502+    // Init with gitignore opt-in (creates .gitignore and sets marker)\n       763\u2502+    await service.init(repoPath, { includeGitignore: true });\n   733 764\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n   734 765\u2502     await Deno.remove(gitignorePath);\n   735 766\u2502 \n   736    \u2502-    // Upgrade should recreate .gitignore\n       767\u2502+    // Upgrade should recreate .gitignore because marker has gitignoreManaged\n   737 768\u2502     const upgradeService = new RepoService(\"0.2.0\");\n   738 769\u2502     const result = await upgradeService.upgrade(repoPath);\n   739 770\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nw0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   757 788\u2502     const repoPath = RepoPath.create(tempDir);\n   758 789\u2502 \n   759 790\u2502     // Init creates .gitignore with managed section\n   760    \u2502-    await service.init(repoPath);\n       791\u2502+    await service.init(repoPath, { includeGitignore: true });\n   761 792\u2502 \n   762    \u2502-    // Upgrade \u2014 section already matches\n       793\u2502+    // Upgrade \u2014 section already matches (marker has gitignoreManaged: true)\n   763 794\u2502     const upgradeService = new RepoService(\"0.2.0\");\n   764 795\u2502     const result = await upgradeService.upgrade(repoPath);\n   765 796\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nx0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   784 815\u2502   });\n   785 816\u2502 });\n   786 817\u2502 \n   787    \u2502-Deno.test(\"RepoService.init tool-specific gitignore entries\", async () => {\n       818\u2502+Deno.test(\"RepoService.init tool-specific gitignore entries when opted in\", async () => {\n   788 819\u2502   const toolGitignoreEntries: Record<AiTool, string> = {\n   789 820\u2502     claude: \".claude/\",\n   790 821\u2502     cursor: \".cursor/skills/\",\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ny0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   801 832\u2502       const service = new RepoService(\"0.1.0\");\n   802 833\u2502       const repoPath = RepoPath.create(tempDir);\n   803 834\u2502 \n   804    \u2502-      await service.init(repoPath, { tool });\n       835\u2502+      await service.init(repoPath, { tool, includeGitignore: true });\n   805 836\u2502 \n   806 837\u2502       const gitignorePath = join(tempDir, \".gitignore\");\n   807 838\u2502       const content = await Deno.readTextFile(gitignorePath);\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nz0 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   832 863\u2502     const service = new RepoService(\"0.1.0\");\n   833 864\u2502     const repoPath = RepoPath.create(tempDir);\n   834 865\u2502 \n   835    \u2502-    await service.init(repoPath);\n       866\u2502+    await service.init(repoPath, { includeGitignore: true });\n   836 867\u2502 \n   837 868\u2502     const content = await Deno.readTextFile(gitignorePath);\n   838 869\u2502     // User content comes first\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ng1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   850 881\u2502     const service = new RepoService(\"0.1.0\");\n   851 882\u2502     const repoPath = RepoPath.create(tempDir);\n   852 883\u2502 \n   853    \u2502-    // Init with claude\n   854    \u2502-    await service.init(repoPath);\n       884\u2502+    // Init with claude and gitignore\n       885\u2502+    await service.init(repoPath, { includeGitignore: true });\n   855 886\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n   856 887\u2502     let content = await Deno.readTextFile(gitignorePath);\n   857 888\u2502     assertStringIncludes(content, \".claude/\");\n   858 889\u2502 \n   859    \u2502-    // Re-init with cursor (force)\n       890\u2502+    // Re-init with cursor (force) and gitignore\n   860 891\u2502     const result = await service.init(repoPath, {\n   861 892\u2502       force: true,\n   862 893\u2502       tool: \"cursor\",\n       894\u2502+      includeGitignore: true,\n   863 895\u2502     });\n   864 896\u2502 \n   865 897\u2502     assertEquals(result.gitignoreAction, \"updated\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nh1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   875 907\u2502     const service = new RepoService(\"0.1.0\");\n   876 908\u2502     const repoPath = RepoPath.create(tempDir);\n   877 909\u2502 \n   878    \u2502-    // Init with claude\n   879    \u2502-    await service.init(repoPath);\n       910\u2502+    // Init with claude and gitignore\n       911\u2502+    await service.init(repoPath, { includeGitignore: true });\n   880 912\u2502 \n   881 913\u2502     // Add user content after the managed section\n   882 914\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n   883 915\u2502     const original = await Deno.readTextFile(gitignorePath);\n   884 916\u2502     await Deno.writeTextFile(gitignorePath, original + \"*.log\\n\");\n   885 917\u2502 \n   886    \u2502-    // Upgrade with tool switch to cursor\n       918\u2502+    // Upgrade with tool switch to cursor (marker has gitignoreManaged: true)\n   887 919\u2502     const upgradeService = new RepoService(\"0.2.0\");\n   888 920\u2502     const result = await upgradeService.upgrade(repoPath, { tool: \"cursor\" });\n   889 921\u2502 \n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\ni1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   903 935\u2502     const service = new RepoService(\"0.1.0\");\n   904 936\u2502     const repoPath = RepoPath.create(tempDir);\n   905 937\u2502 \n   906    \u2502-    const result = await service.init(repoPath);\n       938\u2502+    const result = await service.init(repoPath, { includeGitignore: true });\n   907 939\u2502 \n   908 940\u2502     assertEquals(result.gitignoreAction, \"updated\");\n   909 941\u2502     const content = await Deno.readTextFile(gitignorePath);\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nj1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   917 949\u2502   });\n   918 950\u2502 });\n   919 951\u2502 \n   920    \u2502-Deno.test(\"RepoService.init migrates legacy gitignore format\", async () => {\n       952\u2502+Deno.test(\"RepoService.init migrates legacy gitignore format when opted in\", async () => {\n   921 953\u2502   await withTempDir(async (tempDir) => {\n   922 954\u2502     // Create legacy-format .gitignore (as old swamp would have created it)\n   923 955\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nk1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   941 973\u2502     const service = new RepoService(\"0.1.0\");\n   942 974\u2502     const repoPath = RepoPath.create(tempDir);\n   943 975\u2502 \n   944    \u2502-    const result = await service.init(repoPath);\n       976\u2502+    const result = await service.init(repoPath, { includeGitignore: true });\n   945 977\u2502 \n   946 978\u2502     assertEquals(result.gitignoreAction, \"updated\");\n   947 979\u2502     const content = await Deno.readTextFile(gitignorePath);\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nl1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\n   957 989\u2502   });\n   958 990\u2502 });\n   959 991\u2502 \n   960    \u2502-Deno.test(\"RepoService.init migrates legacy gitignore with user additions\", async () => {\n       992\u2502+Deno.test(\"RepoService.init migrates legacy gitignore with user additions when opted in\", async () => {\n   961 993\u2502   await withTempDir(async (tempDir) => {\n   962 994\u2502     // Create legacy-format .gitignore with user additions after it\n   963 995\u2502     const gitignorePath = join(tempDir, \".gitignore\");\n\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\nm1 src/domain/repo/repo_service_test.ts\u2502\n\u2500\u2500\ufffd",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:10:28.358Z",
    "command": "but log --limit 5 2>&1",
    "but_subcommand": "log",
    "description": "View recent commit messages for style",
    "output": "Exit code 2\nerror: unexpected argument '--limit' found\n\n  tip: to pass '--limit' as a value, use '-- --limit'\n\nUsage: but <SOURCE> [TARGET]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '--limit' found\n\n  tip: to pass '--limit' as a value, use '-- --limit'\n\nUsage: but <SOURCE> [TARGET]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:10:38.044Z",
    "command": "but log 2>&1",
    "but_subcommand": "log",
    "description": "View recent commit log",
    "output": "Exit code 1\nError: \"but log\" is not a command. Type \"but --help\" to see all available commands.\n\nError: \"but log\" is not a command. Type \"but --help\" to see all available commands.",
    "is_error": true
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:11:13.927Z",
    "command": "but --help 2>&1",
    "but_subcommand": "--help",
    "description": "View GitButler CLI help",
    "output": "The GitButler CLI change control system\n\nUsage: but [OPTIONS] <COMMAND>\n       but [OPTIONS] [RUB-SOURCE] [RUB-TARGET]\n\nThe GitButler CLI can be used to do nearly anything the desktop client can do (and more).\nIt is a drop in replacement for most of the Git workflows you would normally use, but Git\ncommands (blame, log, etc) can also be used, as GitButler is fully Git compatible.\n\nCheckout the full docs here: https://docs.gitbutler.com/cli-overview\n\nInspection:\n  status       Overview of the project workspace state.\n  diff         Displays the diff of changes in the repo.\n  show         Shows detailed information about a commit or branch.\n\nBranching and Committing:\n  commit       Commit changes to a stack.\n  stage        Stages a file or hunk to a specific branch.\n  branch       Commands for managing branches.\n  merge        Merge a branch into your local target branch.\n  discard      Discard uncommitted changes from the worktree.\n  resolve      Resolve conflicts in a commit.\n\nRules:\n  mark         Mark a commit or branch for auto-stage or auto-commit.\n  unmark       Removes any marks from the workspace\n\nServer Interactions:\n  push         Push changes in a branch to remote.\n  pull         Updates all applied branches to be up to date with the target b\u2026\n  pr           Commands for creating and managing reviews on a forge, e.g. Git\u2026\n\nEditing Commits:\n  rub          Combines two entities together to perform an operation like ame\u2026\n  absorb       Amends changes into the appropriate commits where they belong.\n  reword       Edit the commit message of the specified commit.\n  uncommit     Uncommit changes from a commit or file-in-commit to the unstage\u2026\n  amend        Amend a file change into a specific commit and rebases any depe\u2026\n  squash       Squash commits together.\n  move         Move a commit to a different location in the stack.\n\nOperation History:\n  oplog        Commands for viewing and managing operation history.\n  undo         Undo the last operation by reverting to the previous snapshot.\n\nOther Commands:\n  setup        Sets up a GitButler project from a git repository in the curren\u2026\n  teardown     Exit GitButler mode and return to normal Git workflow.\n  gui          Open the GitButler GUI for the current project.\n  update       Manage GitButler CLI and app updates.\n  alias        Manage command aliases.\n  config       View and manage GitButler configuration.\n  pick         Cherry-pick a commit from an unapplied branch into an applied v\u2026\n  unapply      Unapply a branch from the workspace.\n  apply        Apply a branch to the workspace.\n  skill        Manage Claude AI skills for GitButler.\n\nTo add command completion, add this to your shell rc: (for example ~/.zshrc)\n  eval \"$(but completions zsh)\"\n\nTo use the GitButler CLI with coding agents (Claude Code hooks, Cursor hooks, MCP), see:\n  https://docs.gitbutler.com/features/ai-integration/ai-overview\n\nOptions:\n  -C, --current-dir <PATH>  Run as if but was started in PATH instead of the cu\u2026\n  -j, --json  Whether to use JSON output format\n  -h, --help  Print help",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:11:16.158Z",
    "command": "but branch --help 2>&1",
    "but_subcommand": "branch",
    "description": "View branch command help",
    "output": "Commands for managing branches.\n\nThis includes creating, deleting, listing, and showing details about branches.\n\nBy default without a subcommand, it will list the branches.\n\nTo apply or unapply branches, use `but apply` and `but unapply`.\n\nUsage: but branch [OPTIONS] [COMMAND]\n\nCommands:\n  new         Creates a new branch in the workspace\n  delete, -d  Deletes a branch from the workspace\n  list        List the branches in the repository\n  show        Show commits ahead of base for a specific branch\n\nOptions:\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:11:19.324Z",
    "command": "but branch new \"fix/gitignore-opt-in\" 2>&1",
    "but_subcommand": "branch",
    "description": "Create new branch for the changes",
    "output": "\u2713 Created branch fix/gitignore-opt-in",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:11:23.715Z",
    "command": "but stage src/cli/commands/repo_init.ts --branch fix/gitignore-opt-in 2>&1 && but stage src/domain/repo/repo_service.ts --branch fix/gitignore-opt-in 2>&1 && but stage src/domain/repo/repo_service_test.ts --branch fix/gitignore-opt-in 2>&1 && but stage src/infrastructure/persistence/repo_marker_repository.ts --branch fix/gitignore-opt-in 2>&1",
    "but_subcommand": "stage",
    "description": "Stage all changed files to the new branch",
    "output": "Staged all hunks in src/cli/commands/repo_init.ts in the unassigned area \u2192 [fix/gitignore-opt-in].\n\n[\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-46,8\", \"+46,9\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-180,11\", \"+182,16\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-243,11\", \"+249,23\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n]\nStaged all hunks in src/domain/repo/repo_service.ts in the unassigned area \u2192 [fix/gitignore-opt-in].\n\n[\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-403,13\", \"+403,35\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-423,10\", \"+445,14\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-461,10\", \"+487,13\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-757,9\", \"+788,9\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-832,7\", \"+863,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-850,16\", \"+881,17\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-875,15\", \"+907,15\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-903,7\", \"+935,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-917,7\", \"+949,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-941,7\", \"+973,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-957,7\", \"+989,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-984,7\", \"+1016,7\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n    AssignmentRejection {\n        request: HunkAssignmentRequest {\n            hunk_header: Some(\n                HunkHeader(\"-1000,5\", \"+1032,95\"),\n            ),\n            path_bytes: \"src/domain/repo/repo_service_test.ts\",\n            stack_id: Some(\n                e4a5e191-5f4f-47c2-9180-01b91c32d996,\n            ),\n        },\n        locks: [\n            HunkLock {\n                target: Stack(\n                    b2148868-36e5-4358-a9ba-4d41a18c8465,\n                ),\n                commit_id: Sha1(b1eb1d3777992471c7e308181ea55e1485be6016),\n            },\n        ],\n    },\n]\nStaged all hunks in src/domain/repo/repo_service_test.ts in the unassigned area \u2192 [fix/gitignore-opt-in].\n\nStaged the only hunk in src/infrastructure/persistence/repo_marker_repository.ts in the unassigned area \u2192 [fix/gitignore-opt-in].",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:00.531Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check current staging status",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a     no changes\n\u250a\n\u250a  \u256d\u2504j2 [staged to fix/managed-gitignore-section]\n\u250a  \u2502 nk M src/domain/repo/repo_service.ts \ud83d\udd12 b1eb1d3\n\u250a  \u2502 nu M src/domain/repo/repo_service_test.ts \ud83d\udd12 b1eb1d3\n\u250a  \u2502\n\u250a\u256d\u2504ma [fix/managed-gitignore-section]  \n\u250a\u25cf   b1eb1d3 fix: manage a swamp section in existing .gitignore  \n\u251c\u256f\n\u250a\n\u250a  \u256d\u2504k2 [staged to fix/gitignore-opt-in]\n\u250a  \u2502 ptr M src/cli/commands/repo_init.ts \n\u250a  \u2502  zo M src/domain/repo/repo_service.ts \ud83d\udd12 b1eb1d3\n\u250a  \u2502  tr M src/domain/repo/repo_service_test.ts \ud83d\udd12 b1eb1d3\n\u250a  \u2502  ul M src/infrastructure/persistence/repo_marker_repository.ts \n\u250a  \u2502\n\u250a\u256d\u2504op [fix/gitignore-opt-in] (no commits) \n\u251c\u256f\n\u250a\n\u250a\u25cf 9faeb31 (upstream) \u23eb 3 new commits (checked 1 minute ago)\n\u251c\u256f 2ad5260 [origin/main] 2026-02-25 fix: coerce --input string values to mat\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:09.500Z",
    "command": "but stage --help 2>&1",
    "but_subcommand": "stage",
    "description": "Check stage command options",
    "output": "Stages a file or hunk to a specific branch.\n\nWithout arguments, opens an interactive TUI for selecting files and hunks to stage.\nWith arguments, stages the specified file or hunk to the given branch.\n\nUsage:\n  `but stage`                             (interactive TUI selector)\n  `but stage --branch <branch>`           (interactive, specific branch)\n  `but stage <file-or-hunk> <branch>`     (direct staging)\n\nUsage: but stage [OPTIONS] [FILE_OR_HUNK] [BRANCH_POS]\n\nArguments:\n  [FILE_OR_HUNK]\n          File or hunk ID to stage\n\n  [BRANCH_POS]\n          Branch to stage to (positional)\n\nOptions:\n  -b, --branch <BRANCH>\n          Branch to stage to (for interactive mode)\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:13.503Z",
    "command": "but stage nk fix/gitignore-opt-in 2>&1 && but stage nu fix/gitignore-opt-in 2>&1",
    "but_subcommand": "stage",
    "description": "Move locked hunks to the new branch",
    "output": "The user doesn't want to proceed with this tool use. The tool use was rejected (eg. if it was a file edit, the new_string was NOT written to the file). STOP what you are doing and wait for the user to tell you how to proceed.",
    "is_error": true
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:27.603Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Check current workspace status",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a   zm M src/domain/repo/repo_service.ts \n\u250a   vu M src/domain/repo/repo_service_test.ts \n\u250a\n\u250a  \u256d\u2504j2 [staged to fix/gitignore-opt-in]\n\u250a  \u2502 ptr M src/cli/commands/repo_init.ts \n\u250a  \u2502  zo M src/domain/repo/repo_service.ts \n\u250a  \u2502  tr M src/domain/repo/repo_service_test.ts \n\u250a  \u2502  ul M src/infrastructure/persistence/repo_marker_repository.ts \n\u250a  \u2502\n\u250a\u256d\u2504fi [fix/gitignore-opt-in] (no commits) \n\u251c\u256f\n\u250a\n\u2534 9faeb31 [origin/main] 2026-02-25 feat: show SHA-256 integrity check statu\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:31.371Z",
    "command": "but stage zm fix/gitignore-opt-in 2>&1 && but stage vu fix/gitignore-opt-in 2>&1",
    "but_subcommand": "stage",
    "description": "Stage remaining unstaged changes",
    "output": "Staged all hunks in src/domain/repo/repo_service.ts in the unassigned area \u2192 [fix/gitignore-opt-in].\n\nStaged all hunks in src/domain/repo/repo_service_test.ts in the unassigned area \u2192 [fix/gitignore-opt-in].",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:37.150Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Verify all changes are staged",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a     no changes\n\u250a\n\u250a  \u256d\u2504h2 [staged to fix/gitignore-opt-in]\n\u250a  \u2502 ptr M src/cli/commands/repo_init.ts \n\u250a  \u2502  zo M src/domain/repo/repo_service.ts \n\u250a  \u2502  tr M src/domain/repo/repo_service_test.ts \n\u250a  \u2502  ul M src/infrastructure/persistence/repo_marker_repository.ts \n\u250a  \u2502\n\u250a\u256d\u2504fi [fix/gitignore-opt-in] (no commits) \n\u251c\u256f\n\u250a\n\u2534 9faeb31 [origin/main] 2026-02-25 feat: show SHA-256 integrity check statu\n\nHint: run `but diff` to see uncommitted changes and `but stage <file>` to stage them to a branch",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:45.721Z",
    "command": "but commit -b fix/gitignore-opt-in -m \"$(cat <<'EOF'\nfix: make .gitignore management opt-in via --include-gitignore flag\n\nPR #461 added automatic .gitignore managed section during init/upgrade.\nUser feedback requested this be toggleable and off by default, since\nautomatically modifying .gitignore can be surprising in established repos\nthat already have their own gitignore conventions.\n\nThis makes gitignore management opt-in:\n- `swamp init` / `swamp upgrade` no longer touch .gitignore by default\n- `--include-gitignore` flag enables managed section creation\n- Preference is persisted as `gitignoreManaged` in .swamp.yaml so\n  subsequent upgrades honor the choice automatically\n- `--no-include-gitignore` on upgrade explicitly opts out\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit changes with descriptive message",
    "output": "Exit code 2\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unexpected argument '-b' found\n\n  tip: to pass '-b' as a value, use '-- -b'\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:49.526Z",
    "command": "but commit --help 2>&1",
    "but_subcommand": "commit",
    "description": "Check commit command syntax",
    "output": "Commit changes to a stack.\n\nThe `but commit` command allows you to create a new commit\non a specified branch (stack) with the current uncommitted changes.\n\nIf there is only one branch applied, it will commit to that branch by default.\n\nIf there are multiple branches applied, you must specify which branch to\ncommit to, or if in interactive mode, you will be prompted to select one.\n\nBy default, all uncommitted changes and all changes already staged to that\nbranch will be included in the commit. If you only want to commit the changes\nthat are already staged to that branch, you can use the `--only` flag.\n\nIt will not commit changes staged to other branches.\n\nUse `but commit empty --before <target>` or `but commit empty --after <target>`\nto insert a blank commit. This is useful for creating a placeholder\ncommit that you can amend changes into later using `but mark`, `but rub` or `but absorb`.\n\nUsage: but commit [OPTIONS] [BRANCH] [COMMAND]\n\nCommands:\n  empty  Insert a blank commit before or after the specified commit.\n\nArguments:\n  [BRANCH]\n          Branch CLI ID or name to derive the stack to commit to\n\nOptions:\n  -m, --message <MESSAGE>\n          Commit message\n\n      --message-file <FILE>\n          Read commit message from file\n\n  -c, --create\n          Whether to create a new branch for this commit. If the branch name given matches an\n          existing branch, that branch will be used instead. If no branch name is given, a new\n          branch with a generated name will be created\n\n  -j, --json\n          Whether to use JSON output format\n\n  -o, --only\n          Only commit staged files, not unstaged files\n\n  -n, --no-hooks\n          Bypass pre-commit hooks\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -i, --ai[=<AI>]\n          Generate commit message using AI with optional user summary. Use --ai by itself or\n          --ai=\"your instructions\" (equals sign required for value)\n\n  -p, --changes <CHANGES>\n          Uncommitted file or hunk CLI IDs to include in the commit. Can be specified multiple times\n          or as comma-separated values. If not specified, all uncommitted changes (or changes staged\n          to the target branch) are committed\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:55.510Z",
    "command": "but commit fix/gitignore-opt-in -m \"$(cat <<'EOF'\nfix: make .gitignore management opt-in via --include-gitignore flag\n\nPR #461 added automatic .gitignore managed section during init/upgrade.\nUser feedback requested this be toggleable and off by default, since\nautomatically modifying .gitignore can be surprising in established repos\nthat already have their own gitignore conventions.\n\nThis makes gitignore management opt-in:\n- `swamp init` / `swamp upgrade` no longer touch .gitignore by default\n- `--include-gitignore` flag enables managed section creation\n- Preference is persisted as `gitignoreManaged` in .swamp.yaml so\n  subsequent upgrades honor the choice automatically\n- `--no-include-gitignore` on upgrade explicitly opts out\n\nCo-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>\nEOF\n)\" 2>&1",
    "but_subcommand": "commit",
    "description": "Commit changes to fix/gitignore-opt-in branch",
    "output": "\u2713 Created commit fe33187 on branch fix/gitignore-opt-in",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:12:58.466Z",
    "command": "but push fix/gitignore-opt-in 2>&1",
    "but_subcommand": "push",
    "description": "Push branch to remote",
    "output": "",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:13:04.268Z",
    "command": "but status 2>&1",
    "but_subcommand": "status",
    "description": "Verify push status",
    "output": "\u256d\u2504zz [unstaged changes] \n\u250a     no changes\n\u250a\n\u250a\u256d\u2504fi [fix/gitignore-opt-in]  \n\u250a\u25cf   fe33187 fix: make .gitignore management opt-in via --inclu  \n\u251c\u256f\n\u250a\n\u2534 9faeb31 [origin/main] 2026-02-25 feat: show SHA-256 integrity check statu\n\nHint: run `but help` for all commands",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:13:24.270Z",
    "command": "but pr create fix/gitignore-opt-in --title \"fix: make .gitignore management opt-in via --include-gitignore flag\" --body \"$(cat <<'EOF'\n## Summary\n\nFollows up on #461, which added automatic `.gitignore` managed section\nduring `swamp repo init` and `swamp repo upgrade`.\n\n**Problem:** Automatically modifying `.gitignore` is surprising behavior.\nEstablished repos have their own gitignore conventions, and many users\ntrack their `.swamp/` or `.claude/` directories intentionally. Writing to\n`.gitignore` without being asked violates the principle of least surprise\nand can create unwanted noise in diffs/PRs.\n\n**Solution:** Make gitignore management **opt-in** via a `--include-gitignore`\nCLI flag, with the preference persisted in `.swamp.yaml` so subsequent\nupgrades honor the choice without requiring the flag again.\n\n### Behavior\n\n| Command | Behavior |\n|---------|----------|\n| `swamp init` | Does NOT manage .gitignore (default off) |\n| `swamp init --include-gitignore` | Manages .gitignore, persists `gitignoreManaged: true` in marker |\n| `swamp upgrade` | Manages .gitignore ONLY if marker has `gitignoreManaged: true` |\n| `swamp upgrade --include-gitignore` | Opts in, manages .gitignore, persists preference |\n| `swamp upgrade --no-include-gitignore` | Opts out, persists `gitignoreManaged: false`, skips gitignore |\n\n### Changes\n\n- **`repo_marker_repository.ts`** \u2014 Added `gitignoreManaged?: boolean` to `RepoMarkerData`\n- **`repo_service.ts`** \u2014 Added `\"skipped\"` to `GitignoreAction` type; `init()` skips gitignore by default, manages when `includeGitignore: true`; `upgrade()` respects persisted marker preference with CLI override\n- **`repo_init.ts`** \u2014 Added `--include-gitignore` option to init, upgrade, and repo commands\n- **`repo_service_test.ts`** \u2014 Updated 15 existing tests, added 5 new tests covering opt-in/opt-out/persistence behavior\n\n### Why this matters\n\nThe managed section machinery from #461 is preserved \u2014 when a user opts in, they get the same sentinel-marker-based section management with legacy migration, tool-specific entries, and safe upgrades. The only change is that users must explicitly ask for it, which respects repos that:\n- Already have comprehensive `.gitignore` files\n- Intentionally track `.claude/` or `.agents/` directories\n- Use CI workflows that would be disrupted by unexpected `.gitignore` changes\n\n## Test plan\n\n- [x] `deno check` passes\n- [x] `deno lint` passes\n- [x] `deno fmt` passes\n- [x] All 2054 tests pass (50 repo service tests, including 5 new ones)\n- [x] `deno run compile` succeeds\n- [ ] Manual: `swamp repo init` does NOT create/modify .gitignore\n- [ ] Manual: `swamp repo init --include-gitignore` creates managed section\n- [ ] Manual: `swamp repo upgrade` after opt-in preserves gitignore management\n- [ ] Manual: `swamp repo upgrade --no-include-gitignore` opts out and persists\n\n\ud83e\udd16 Generated with [Claude Code](https://claude.com/claude-code)\nEOF\n)\" 2>&1",
    "but_subcommand": "pr",
    "description": "Create PR with detailed description",
    "output": "Exit code 2\nerror: unrecognized subcommand 'create'\n\n  tip: a similar subcommand exists: 'template'\n\nUsage: but pr [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.\n\nerror: unrecognized subcommand 'create'\n\n  tip: a similar subcommand exists: 'template'\n\nUsage: but pr [OPTIONS] [COMMAND]\n\nFor more information, try '--help'.",
    "is_error": true
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:13:35.047Z",
    "command": "but pr --help 2>&1",
    "but_subcommand": "pr",
    "description": "Check PR command syntax",
    "output": "Commands for creating and managing reviews on a forge, e.g. GitHub PRs or GitLab MRs.\n\nIf you are authenticated with a forge using but config forge auth, you can use the but pr or but mr\ncommands to create pull requests (or merge requests) on the remote repository for your branches.\n\nRunning but pr without a subcommand defaults to but pr new, which will prompt you to select a branch\nto create a PR for.\n\nUsage: but pr [OPTIONS] [COMMAND]\n\nCommands:\n  new       Create a new review for a branch. If no branch is specified, you will be prompted to\n            select one. If there is only one branch without a review, you will be asked to confirm\n  template  Configure the template to use for review descriptions. This will list all available\n            templates found in the repository and allow you to select one\n\nOptions:\n  -d, --draft\n          Whether to create reviews as a draft\n\n  -j, --json\n          Whether to use JSON output format\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:13:40.611Z",
    "command": "but pr new --help 2>&1",
    "but_subcommand": "pr",
    "description": "Check pr new command options",
    "output": "Create a new review for a branch. If no branch is specified, you will be prompted to select one. If\nthere is only one branch without a review, you will be asked to confirm\n\nUsage: but pr new [OPTIONS] [BRANCH]\n\nArguments:\n  [BRANCH]\n          The branch to create a review for\n\nOptions:\n  -m, --message <MESSAGE>\n          review title and description. The first line is the title, the rest is the description\n\n  -F, --file <FILE>\n          Read review title and description from file. The first line is the title, the rest is the\n          description\n\n  -f, --with-force\n          Force push even if it's not fast-forward (defaults to true)\n\n  -j, --json\n          Whether to use JSON output format\n\n  -s, --skip-force-push-protection\n          Skip force push protection checks\n\n  -r, --run-hooks\n          Run pre-push hooks (defaults to true)\n\n      --status-after\n          After a mutation command completes, also output workspace status.\n          \n          In human mode, prints status after the command output. In JSON mode, wraps both in\n          {\"result\": ..., \"status\": ...} on success, or {\"result\": ..., \"status_error\": ...} if the\n          status query fails (in which case \"status\" is absent).\n\n  -t, --default\n          Use the default content for the review title and description, skipping any prompts. If the\n          branch contains only a single commit, the commit message will be used\n\n  -d, --draft\n          Whether to create reviews as a draft\n\n  -h, --help\n          Print help (see a summary with '-h')",
    "is_error": false
  },
  {
    "session_id": "744dbe39-3eae-4527-b9e6-958809d9fc18",
    "project": "-Users-stack72-code-systeminit-swamp",
    "timestamp": "2026-02-25T16:14:07.589Z",
    "command": "but pr new fix/gitignore-opt-in -F /tmp/pr-body.md 2>&1",
    "but_subcommand": "pr",
    "description": "Create PR from file",
    "output": "Exit code 1\nError: Failed to create forge review for branch.\n\nCaused by:\n    No authenticated forge users found.\n    Run 'but config forge auth' to authenticate with GitHub.\n\nError: Failed to create forge review for branch.\n\nCaused by:\n    No authenticated forge users found.\n    Run 'but config forge auth' to authenticate with GitHub.",
    "is_error": true
  }
]