protsearch/pyproject.toml at main · geometric-intelligence/protsearch · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "protsearch"
version = "0.1.0"
description = "A protein search and analysis package"
readme = "README.md"
requires-python = ">=3.8"
license = { text = "MIT" }
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "numpy>=1.24.0",
    "pandas>=2.0.0",
    "scipy>=1.10.0",
    "biopython>=1.81",
    "requests>=2.31.0",
    "openai>=1.0.0",
    "python-dotenv>=1.0.0",
    "tiktoken>=0.5.0",
    "pyyaml>=6.0.1",
    "Flask>=2.3.0",
    "flask-cors>=4.0.0",
    "thefuzz>=0.20.0",
    "google-generativeai>=0.7.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0",
    "pytest-cov>=4.0",
    "black>=23.0",
    "isort>=5.0",
    "ruff>=0.1.0",
]

[tool.setuptools]
packages = ["src"]

[tool.black]
line-length = 88
target-version = ["py38"]

[tool.isort]
profile = "black"
multi_line_output = 3

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
addopts = "-v --cov=protsearch"