intermediate_ggplot2/index2023.Rmd at main · fmicompbio/intermediate_ggplot2 · GitHub

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---
title: "Intermediate ggplot2 workshop 2023"
output:
  rmarkdown::html_document:
    theme: united
    highlight: pygments
    toc: false
    fig_width: 5
editor_options:
  chunk_output_type: console
---

This page contains links to material for the FMI intermediate workshop on [ggplot2](https://ggplot2.tidyverse.org/).

To follow the workshop, the following packages need to be installed (everything
that is needed is installed on the FMI RStudio servers:

```{r, eval = FALSE}
pkgs <- c("knitr", "rmarkdown", "ggplot2", "tibble", "dplyr", "ragg",
          "systemfonts", "sessioninfo", "ggExtra", "ggrepel", "scattermore",
          "GGally", "cowplot", "tidyr", "scales", "ggh4x")
install.packages("BiocManager")
BiocManager::install(pkgs)
```


* [Tips and tricks](https://fmicompbio.github.io/intermediate_ggplot2/intermediate_ggplot2.html)
* [1 - Using custom fonts; plots with error bars](https://fmicompbio.github.io/intermediate_ggplot2/1_fonts_errbars.html)
* [2 - Scatterplots with marginal densities and repelling labels](https://fmicompbio.github.io/intermediate_ggplot2/2_ggmargin_ggrepel.html)
* [3 - Scatterplots with *many* points](https://fmicompbio.github.io/intermediate_ggplot2/3_many_points_scatterplot.html)
* [4 - Pairwise scatter plots](https://fmicompbio.github.io/intermediate_ggplot2/4_ggpairs.html)
* [5 - Combining plots in a grid](https://fmicompbio.github.io/intermediate_ggplot2/5_combining_plot_panels.html)
* [6 - Creating customized heatmaps and combining them in a single figure](https://fmicompbio.github.io/intermediate_ggplot2/6_ppi_heatmaps.html)