From fb49a7e54a2700940d697e6a50087f5bb16262ee Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:05:54 +0000 Subject: [PATCH 1/7] ci: switch release-please to manifest mode Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- .github/workflows/release-please.yml | 4 +--- .release-please-manifest.json | 5 +++++ CONTRIBUTING.md | 6 +++--- docs/contributing.rst | 6 +++--- packages/plugins-workflows/pyproject.toml | 2 +- packages/providers-airflow/pyproject.toml | 2 +- pyproject.toml | 8 +++++++- release-please-config.json | 16 ++++++++++++++++ workspace.toml | 6 ------ 9 files changed, 37 insertions(+), 18 deletions(-) create mode 100644 .release-please-manifest.json create mode 100644 release-please-config.json delete mode 100644 workspace.toml diff --git a/.github/workflows/release-please.yml b/.github/workflows/release-please.yml index 851a38b3..52a853bc 100644 --- a/.github/workflows/release-please.yml +++ b/.github/workflows/release-please.yml @@ -17,6 +17,4 @@ jobs: id: release uses: googleapis/release-please-action@v4 with: - release-type: python - package-name: imednet - version-file: packages/core/pyproject.toml + command: manifest diff --git a/.release-please-manifest.json b/.release-please-manifest.json new file mode 100644 index 00000000..5ba55d9b --- /dev/null +++ b/.release-please-manifest.json @@ -0,0 +1,5 @@ +{ + "packages/core": "0.6.0", + "packages/providers-airflow": "0.5.1", + "packages/plugins-workflows": "0.5.1" +} diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index d14ea357..b3881953 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -57,9 +57,9 @@ Releases are fully automated and driven by merged PR titles: poetry run pytest -q ``` 3. Merge to `main` using **Squash and merge** so the PR title becomes the merged commit message. -4. The `Automated Release` workflow runs `release-please` on `main` pushes and opens/updates a - Release PR with calculated semantic version, changelog updates, and `packages/core/pyproject.toml` - version updates. +4. The `Automated Release` workflow runs `release-please` in manifest mode on `main` pushes and + opens/updates a Release PR with calculated semantic version and changelog updates for the package + manifests under `packages/`. 5. Maintainers trigger publication by approving and merging the bot-created Release PR. Configuration requirements: diff --git a/docs/contributing.rst b/docs/contributing.rst index eb894cd7..e03d2414 100644 --- a/docs/contributing.rst +++ b/docs/contributing.rst @@ -76,9 +76,9 @@ Releases are fully automated and driven by merged PR titles: poetry run pytest -q 3. Merge to ``main`` with **Squash and merge** so the PR title becomes the merged commit message. -4. The ``Automated Release`` workflow runs ``release-please`` on ``main`` pushes and opens/updates - a Release PR with semantic version, changelog updates, and ``packages/core/pyproject.toml`` - version updates. +4. The ``Automated Release`` workflow runs ``release-please`` in manifest mode on ``main`` pushes + and opens/updates a Release PR with semantic version and changelog updates for the package + manifests under ``packages/``. 5. Maintainers trigger publication by approving and merging the bot-created Release PR. Configuration requirements: diff --git a/packages/plugins-workflows/pyproject.toml b/packages/plugins-workflows/pyproject.toml index 20b10d00..23855042 100644 --- a/packages/plugins-workflows/pyproject.toml +++ b/packages/plugins-workflows/pyproject.toml @@ -7,7 +7,7 @@ packages = [{ include = "imednet_workflows", from = "src" }] [tool.poetry.dependencies] python = "^3.10" -imednet = ">=0.6.0,<1.0.0" +imednet = { path = "../core", develop = true } pandas = ">=2.2.3,<3.0.0" typer = { extras = ["all"], version = "^0.15.2" } diff --git a/packages/providers-airflow/pyproject.toml b/packages/providers-airflow/pyproject.toml index e291beec..98b0bc58 100644 --- a/packages/providers-airflow/pyproject.toml +++ b/packages/providers-airflow/pyproject.toml @@ -7,7 +7,7 @@ packages = [{ include = "apache_airflow_providers_imednet", from = "src" }] [tool.poetry.dependencies] python = "^3.10" -imednet = ">=0.6.0,<1.0.0" +imednet = { path = "../core", develop = true } apache-airflow = ">=2.8.0" apache-airflow-providers-amazon = ">=8.0.0" diff --git a/pyproject.toml b/pyproject.toml index 6fe039fd..b4c380df 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,9 +1,15 @@ [tool.poetry] +name = "imednet-workspace" +version = "0.1.0" +description = "Monorepo workspace for imednet packages" +authors = ["Frederick de Ruiter <127706008+fderuiter@users.noreply.github.com>"] package-mode = false [tool.poetry.dependencies] -python = "^3.10" +python = ">=3.10,<4.0" imednet = { path = "packages/core", develop = true } +imednet-workflows = { path = "packages/plugins-workflows", develop = true } +apache-airflow-providers-imednet = { path = "packages/providers-airflow", develop = true } [tool.poetry.group.dev.dependencies] pandas = ">=2.2.3,<3.0.0" diff --git a/release-please-config.json b/release-please-config.json new file mode 100644 index 00000000..f4718642 --- /dev/null +++ b/release-please-config.json @@ -0,0 +1,16 @@ +{ + "packages": { + "packages/core": { + "release-type": "python", + "package-name": "imednet" + }, + "packages/providers-airflow": { + "release-type": "python", + "package-name": "apache-airflow-providers-imednet" + }, + "packages/plugins-workflows": { + "release-type": "python", + "package-name": "imednet-workflows" + } + } +} diff --git a/workspace.toml b/workspace.toml deleted file mode 100644 index e0ec640a..00000000 --- a/workspace.toml +++ /dev/null @@ -1,6 +0,0 @@ -[workspace] -members = [ - "packages/core", - "packages/providers-airflow", - "packages/plugins-workflows", -] From bb811df60368a10cc8faaa9c81582262c0b8b6c0 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:08:54 +0000 Subject: [PATCH 2/7] chore: align workspace lockfile dependencies Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- packages/core/src/imednet/core/base_client.py | 9 +- poetry.lock | 5270 ++++++++++++++++- pyproject.toml | 4 +- 3 files changed, 5030 insertions(+), 253 deletions(-) diff --git a/packages/core/src/imednet/core/base_client.py b/packages/core/src/imednet/core/base_client.py index 7cbc3c46..d1a5ea60 100644 --- a/packages/core/src/imednet/core/base_client.py +++ b/packages/core/src/imednet/core/base_client.py @@ -3,14 +3,17 @@ from __future__ import annotations import logging -from typing import Any, Optional, Union +from typing import TYPE_CHECKING, Any, Optional, Union + +if TYPE_CHECKING: + from opentelemetry.trace import Tracer +else: # pragma: no cover - typing fallback for optional dependency + Tracer = Any try: from opentelemetry import trace - from opentelemetry.trace import Tracer except Exception: # pragma: no cover - optional dependency trace = None - Tracer = None import httpx from imednet.auth.api_key import ApiKeyAuth diff --git a/poetry.lock b/poetry.lock index 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a/pyproject.toml b/pyproject.toml index b4c380df..f071677f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,7 @@ apache-airflow-providers-imednet = { path = "packages/providers-airflow", develo pandas = ">=2.2.3,<3.0.0" black = ">=26.3.1" ruff = "^0.11.6" -mypy = "^1.15.0" +mypy = "1.15.0" pytest = ">=9.0.3" pytest-cov = "^6.1.1" respx = "^0.22.0" @@ -30,7 +30,7 @@ sphinx-autodoc-typehints = "*" sphinx-rtd-theme = "^3.0.2" boto3 = "^1.34" moto = "^5.0" -sqlalchemy = "^2.0" +sqlalchemy = ">=1.4.54,<2.0" openpyxl = "^3.1" sphinxcontrib-mermaid = "^0.9.2" doc8 = "^2.0.0" From 37eaccf802998f7f7256cc1af13fcc1906816249 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:23:47 +0000 Subject: [PATCH 3/7] fix: stabilize workspace dependency validation Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- packages/core/src/imednet/core/base_client.py | 5 +- .../operators/export.py | 11 +- .../operators/to_s3.py | 25 +- .../sensors.py | 29 +- poetry.lock | 5081 +---------------- pyproject.toml | 3 +- 6 files changed, 175 insertions(+), 4979 deletions(-) diff --git a/packages/core/src/imednet/core/base_client.py b/packages/core/src/imednet/core/base_client.py index d1a5ea60..4b8d27a5 100644 --- a/packages/core/src/imednet/core/base_client.py +++ b/packages/core/src/imednet/core/base_client.py @@ -11,7 +11,9 @@ Tracer = Any try: - from opentelemetry import trace + from opentelemetry import trace as otel_trace + + trace: Any = otel_trace except Exception: # pragma: no cover - optional dependency trace = None import httpx @@ -58,6 +60,7 @@ def __init__( self.auth = ApiKeyAuth(config.api_key or "", config.security_key or "") self._client = self._create_client(self.auth) + self._tracer: Optional[Tracer] if tracer is not None: self._tracer = tracer diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/export.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/export.py index f5e33063..5c296963 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/export.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/export.py @@ -2,7 +2,12 @@ from __future__ import annotations -from typing import Any, Dict, Iterable, Optional +from typing import TYPE_CHECKING, Any, Dict, Optional, Sequence + +if TYPE_CHECKING: + from airflow.utils.context import Context +else: # pragma: no cover - typing fallback for optional Airflow dependency + Context = Dict[str, Any] from airflow.models import BaseOperator @@ -13,7 +18,7 @@ class ImednetExportOperator(BaseOperator): """Export study records using helpers from :mod:`imednet.integrations.export`.""" - template_fields: Iterable[str] = ("study_key", "output_path") + template_fields: Sequence[str] = ("study_key", "output_path") def __init__( self, @@ -32,7 +37,7 @@ def __init__( self.export_kwargs = export_kwargs or {} self.imednet_conn_id = imednet_conn_id - def execute(self, context: Dict[str, Any]) -> str: + def execute(self, context: Context) -> str: hook = ImednetHook(self.imednet_conn_id) sdk = hook.get_conn() export_callable = getattr(export, self.export_func) diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py index d76a1876..d65dad1c 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py @@ -3,7 +3,22 @@ from __future__ import annotations import json -from typing import Any, Dict, Iterable, Optional +from typing import TYPE_CHECKING, Any, Dict, Optional, Sequence + +if TYPE_CHECKING: + from airflow.exceptions import AirflowException + from airflow.utils.context import Context +else: # pragma: no cover - typing fallback for optional Airflow dependency + Context = Dict[str, Any] + try: + from airflow.exceptions import AirflowException + except (ImportError, ModuleNotFoundError): + + class _AirflowError(Exception): + pass + + AirflowException = _AirflowError + _MISSING_AMAZON_PROVIDER_MESSAGE = ( "apache-airflow-providers-amazon package is required for " @@ -12,14 +27,12 @@ ) try: # pragma: no cover - optional Airflow dependency - from airflow.exceptions import AirflowException # type: ignore from airflow.models import BaseOperator # type: ignore from airflow.providers.amazon.aws.hooks.s3 import S3Hook # type: ignore except (ImportError, ModuleNotFoundError): # pragma: no cover - placeholder fallback - AirflowException = Exception class BaseOperator: # type: ignore - template_fields: Iterable[str] = () + template_fields: Sequence[str] = () def __init__(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover pass @@ -40,7 +53,7 @@ def load_string(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover class ImednetToS3Operator(BaseOperator): """Fetch data from iMednet and store it in S3 as JSON.""" - template_fields: Iterable[str] = ("study_key", "s3_key") + template_fields: Sequence[str] = ("study_key", "s3_key") def __init__( self, @@ -66,7 +79,7 @@ def __init__( def _get_sdk(self) -> ImednetSDK: return ImednetHook(self.imednet_conn_id).get_conn() - def execute(self, context: Dict[str, Any]) -> str: + def execute(self, context: Context) -> str: sdk = self._get_sdk() endpoint_obj = getattr(sdk, self.endpoint) if hasattr(endpoint_obj, "list"): diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py index 865dc0e7..4768c95e 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py @@ -2,16 +2,29 @@ from __future__ import annotations -from typing import Any, Dict, Iterable +from typing import TYPE_CHECKING, Any, Dict, Sequence -try: # pragma: no cover - optional Airflow dependency +if TYPE_CHECKING: from airflow.exceptions import AirflowException + from airflow.utils.context import Context +else: # pragma: no cover - typing fallback for optional Airflow dependency + Context = Dict[str, Any] + try: + from airflow.exceptions import AirflowException + except (ImportError, ModuleNotFoundError): + + class _AirflowError(Exception): + pass + + AirflowException = _AirflowError + + +try: # pragma: no cover - optional Airflow dependency from airflow.sensors.base import BaseSensorOperator except (ImportError, ModuleNotFoundError): # pragma: no cover - placeholder fallback - AirflowException = Exception class BaseSensorOperator: # type: ignore - template_fields: Iterable[str] = () + template_fields: Sequence[str] = () def __init__(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover pass @@ -27,7 +40,7 @@ def __init__(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover class ImednetJobSensor(BaseSensorOperator): """Poll iMednet for job completion.""" - template_fields: Iterable[str] = ("study_key", "batch_id") + template_fields: Sequence[str] = ("study_key", "batch_id") def __init__( self, @@ -46,13 +59,15 @@ def __init__( def _get_sdk(self) -> ImednetSDK: return ImednetHook(self.imednet_conn_id).get_conn() - def poke(self, context: Dict[str, Any]) -> bool: + def poke(self, context: Context) -> bool: sdk = self._get_sdk() job = sdk.jobs.get(self.study_key, self.batch_id) state = job.state.upper() if state in TERMINAL_STATES: if state != "COMPLETED": - raise AirflowException(f"Job {self.batch_id} ended in state {state}") + from . import operators + + raise operators.AirflowException(f"Job {self.batch_id} ended in state {state}") return True return False diff --git 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f071677f..220ac8cd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,6 @@ package-mode = false python = ">=3.10,<4.0" imednet = { path = "packages/core", develop = true } imednet-workflows = { path = "packages/plugins-workflows", develop = true } -apache-airflow-providers-imednet = { path = "packages/providers-airflow", develop = true } [tool.poetry.group.dev.dependencies] pandas = ">=2.2.3,<3.0.0" @@ -30,7 +29,7 @@ sphinx-autodoc-typehints = "*" sphinx-rtd-theme = "^3.0.2" boto3 = "^1.34" moto = "^5.0" -sqlalchemy = ">=1.4.54,<2.0" +sqlalchemy = "^2.0" openpyxl = "^3.1" sphinxcontrib-mermaid = "^0.9.2" doc8 = "^2.0.0" From 54bb49fdaccb860b3b1bd27bc7c52cfdf9d33e25 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:26:50 +0000 Subject: [PATCH 4/7] chore: address validation review feedback Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- packages/core/src/imednet/core/base_client.py | 2 +- .../apache_airflow_providers_imednet/sensors.py | 14 ++------------ poetry.lock | 2 +- pyproject.toml | 2 +- 4 files changed, 5 insertions(+), 15 deletions(-) diff --git a/packages/core/src/imednet/core/base_client.py b/packages/core/src/imednet/core/base_client.py index 4b8d27a5..48d750f3 100644 --- a/packages/core/src/imednet/core/base_client.py +++ b/packages/core/src/imednet/core/base_client.py @@ -60,7 +60,7 @@ def __init__( self.auth = ApiKeyAuth(config.api_key or "", config.security_key or "") self._client = self._create_client(self.auth) - self._tracer: Optional[Tracer] + self._tracer: Optional[Tracer] = None if tracer is not None: self._tracer = tracer diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py index 4768c95e..24e99dc2 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py @@ -5,18 +5,9 @@ from typing import TYPE_CHECKING, Any, Dict, Sequence if TYPE_CHECKING: - from airflow.exceptions import AirflowException from airflow.utils.context import Context else: # pragma: no cover - typing fallback for optional Airflow dependency Context = Dict[str, Any] - try: - from airflow.exceptions import AirflowException - except (ImportError, ModuleNotFoundError): - - class _AirflowError(Exception): - pass - - AirflowException = _AirflowError try: # pragma: no cover - optional Airflow dependency @@ -33,6 +24,7 @@ def __init__(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover from imednet.sdk import ImednetSDK from .hooks import ImednetHook +from .operators import AirflowException TERMINAL_STATES = {"COMPLETED", "FAILED", "CANCELLED"} @@ -65,9 +57,7 @@ def poke(self, context: Context) -> bool: state = job.state.upper() if state in TERMINAL_STATES: if state != "COMPLETED": - from . import operators - - raise operators.AirflowException(f"Job {self.batch_id} ended in state {state}") + raise AirflowException(f"Job {self.batch_id} ended in state {state}") return True return False diff --git a/poetry.lock b/poetry.lock index 836f8b36..12da4ee4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2761,4 +2761,4 @@ test = ["pytest", "pytest-cov"] [metadata] lock-version = "2.1" python-versions = ">=3.10,<4.0" -content-hash = "18b4f64123d53138c0a300b6fabec6f7e67069e4b62e6166ce8923bb68f92ff2" +content-hash = "ae5ad609acc407a26b04c2a98b24f589f42ad8ea1324c5d3f672ba940ebfa455" diff --git a/pyproject.toml b/pyproject.toml index 220ac8cd..3d6e48ee 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,7 +14,7 @@ imednet-workflows = { path = "packages/plugins-workflows", develop = true } pandas = ">=2.2.3,<3.0.0" black = ">=26.3.1" ruff = "^0.11.6" -mypy = "1.15.0" +mypy = ">=1.15.0,<1.16.0" pytest = ">=9.0.3" pytest-cov = "^6.1.1" respx = "^0.22.0" From 72193b87f858de014bcddc7fcf995af4e04a3e79 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:30:23 +0000 Subject: [PATCH 5/7] chore: polish validation compatibility fixes Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- packages/core/src/imednet/core/base_client.py | 13 +++++++------ .../operators/to_s3.py | 4 ++-- pyproject.toml | 1 + 3 files changed, 10 insertions(+), 8 deletions(-) diff --git a/packages/core/src/imednet/core/base_client.py b/packages/core/src/imednet/core/base_client.py index 48d750f3..d8c42c7a 100644 --- a/packages/core/src/imednet/core/base_client.py +++ b/packages/core/src/imednet/core/base_client.py @@ -10,12 +10,6 @@ else: # pragma: no cover - typing fallback for optional dependency Tracer = Any -try: - from opentelemetry import trace as otel_trace - - trace: Any = otel_trace -except Exception: # pragma: no cover - optional dependency - trace = None import httpx from imednet.auth.api_key import ApiKeyAuth @@ -29,6 +23,13 @@ ) from imednet.utils import sanitize_base_url +trace: Any = None +try: + from opentelemetry import trace as _trace +except Exception: # pragma: no cover - optional dependency + pass +else: + trace = _trace logger = logging.getLogger(__name__) diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py index d65dad1c..fac96f13 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py @@ -14,10 +14,10 @@ from airflow.exceptions import AirflowException except (ImportError, ModuleNotFoundError): - class _AirflowError(Exception): + class _FallbackAirflowError(Exception): pass - AirflowException = _AirflowError + AirflowException = _FallbackAirflowError _MISSING_AMAZON_PROVIDER_MESSAGE = ( diff --git a/pyproject.toml b/pyproject.toml index 3d6e48ee..e5149172 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,6 +14,7 @@ imednet-workflows = { path = "packages/plugins-workflows", develop = true } pandas = ">=2.2.3,<3.0.0" black = ">=26.3.1" ruff = "^0.11.6" +# Keep mypy on 1.15.x until the workspace packages are updated for newer checker behavior. mypy = ">=1.15.0,<1.16.0" pytest = ">=9.0.3" pytest-cov = "^6.1.1" From 0aa024cded4779c295c25591acb333f2089b593f Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:33:51 +0000 Subject: [PATCH 6/7] refactor: share airflow compatibility shims Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- packages/core/src/imednet/core/base_client.py | 4 ++-- .../_airflow_compat.py | 17 +++++++++++++++++ .../operators/to_s3.py | 17 ++--------------- .../apache_airflow_providers_imednet/sensors.py | 10 ++-------- 4 files changed, 23 insertions(+), 25 deletions(-) create mode 100644 packages/providers-airflow/src/apache_airflow_providers_imednet/_airflow_compat.py diff --git a/packages/core/src/imednet/core/base_client.py b/packages/core/src/imednet/core/base_client.py index d8c42c7a..d990a8c9 100644 --- a/packages/core/src/imednet/core/base_client.py +++ b/packages/core/src/imednet/core/base_client.py @@ -26,10 +26,10 @@ trace: Any = None try: from opentelemetry import trace as _trace + + trace = _trace except Exception: # pragma: no cover - optional dependency pass -else: - trace = _trace logger = logging.getLogger(__name__) diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/_airflow_compat.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/_airflow_compat.py new file mode 100644 index 00000000..07bb5c24 --- /dev/null +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/_airflow_compat.py @@ -0,0 +1,17 @@ +from __future__ import annotations + +from typing import TYPE_CHECKING, Any, Dict + +if TYPE_CHECKING: + from airflow.exceptions import AirflowException + from airflow.utils.context import Context +else: # pragma: no cover - typing fallback for optional Airflow dependency + Context = Dict[str, Any] + try: + from airflow.exceptions import AirflowException + except (ImportError, ModuleNotFoundError): + + class _FallbackAirflowError(Exception): + pass + + AirflowException = _FallbackAirflowError diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py index fac96f13..ac03d2e5 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/operators/to_s3.py @@ -3,22 +3,9 @@ from __future__ import annotations import json -from typing import TYPE_CHECKING, Any, Dict, Optional, Sequence - -if TYPE_CHECKING: - from airflow.exceptions import AirflowException - from airflow.utils.context import Context -else: # pragma: no cover - typing fallback for optional Airflow dependency - Context = Dict[str, Any] - try: - from airflow.exceptions import AirflowException - except (ImportError, ModuleNotFoundError): - - class _FallbackAirflowError(Exception): - pass - - AirflowException = _FallbackAirflowError +from typing import Any, Dict, Optional, Sequence +from .._airflow_compat import AirflowException, Context _MISSING_AMAZON_PROVIDER_MESSAGE = ( "apache-airflow-providers-amazon package is required for " diff --git a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py index 24e99dc2..eabfff6d 100644 --- a/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py +++ b/packages/providers-airflow/src/apache_airflow_providers_imednet/sensors.py @@ -2,13 +2,7 @@ from __future__ import annotations -from typing import TYPE_CHECKING, Any, Dict, Sequence - -if TYPE_CHECKING: - from airflow.utils.context import Context -else: # pragma: no cover - typing fallback for optional Airflow dependency - Context = Dict[str, Any] - +from typing import Any, Sequence try: # pragma: no cover - optional Airflow dependency from airflow.sensors.base import BaseSensorOperator @@ -23,8 +17,8 @@ def __init__(self, *args: Any, **kwargs: Any) -> None: # pragma: no cover from imednet.sdk import ImednetSDK +from ._airflow_compat import AirflowException, Context from .hooks import ImednetHook -from .operators import AirflowException TERMINAL_STATES = {"COMPLETED", "FAILED", "CANCELLED"} From d62e8e99411cecd5f0fd0af7e0ecd90cc1814af0 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 May 2026 16:40:47 +0000 Subject: [PATCH 7/7] fix: require patched apache-airflow release Agent-Logs-Url: https://github.com/fderuiter/imednet-python-sdk/sessions/7ebfd769-2a2e-4dbc-99a9-c58c4c760093 Co-authored-by: fderuiter <127706008+fderuiter@users.noreply.github.com> --- README.md | 2 +- docs/airflow.rst | 2 +- docs/quick_start.rst | 2 +- packages/providers-airflow/pyproject.toml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index d61d63ec..60c24df9 100644 --- a/README.md +++ b/README.md @@ -77,7 +77,7 @@ pip install "imednet[excel]" # For Excel export pip install imednet-workflows # Airflow provider package -pip install apache-airflow-providers-imednet apache-airflow-providers-amazon +pip install "apache-airflow>=3.2.0" apache-airflow-providers-imednet apache-airflow-providers-amazon ``` ### Development Version diff --git a/docs/airflow.rst b/docs/airflow.rst index 440ca2f1..aee2da75 100644 --- a/docs/airflow.rst +++ b/docs/airflow.rst @@ -10,7 +10,7 @@ Install the provider package: .. code-block:: bash - pip install apache-airflow-providers-imednet + pip install "apache-airflow>=3.2.0" apache-airflow-providers-imednet Example DAG ----------- diff --git a/docs/quick_start.rst b/docs/quick_start.rst index 7ca0a479..525a6b6a 100644 --- a/docs/quick_start.rst +++ b/docs/quick_start.rst @@ -14,7 +14,7 @@ Optional plugin packages: .. code-block:: console pip install imednet-workflows - pip install apache-airflow-providers-imednet + pip install "apache-airflow>=3.2.0" apache-airflow-providers-imednet Set your credentials by copying the environment template or exporting them directly (see :doc:`configuration` for details): diff --git a/packages/providers-airflow/pyproject.toml b/packages/providers-airflow/pyproject.toml index 98b0bc58..83da88fb 100644 --- a/packages/providers-airflow/pyproject.toml +++ b/packages/providers-airflow/pyproject.toml @@ -8,7 +8,7 @@ packages = [{ include = "apache_airflow_providers_imednet", from = "src" }] [tool.poetry.dependencies] python = "^3.10" imednet = { path = "../core", develop = true } -apache-airflow = ">=2.8.0" +apache-airflow = ">=3.2.0" apache-airflow-providers-amazon = ">=8.0.0" [build-system]