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Commit 502ad1a

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Nuwah12
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buuild model when no homer
1 parent a93f3a6 commit 502ad1a

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wdl_tasks/peak_calling.wdl

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -73,8 +73,7 @@ task MACS2_CallPeaks {
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set -euo pipefail
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# Choose fragment size (estimated if available, else default)
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FRAGSIZE=~{select_first([estimated_fragment_size, default_extsize])}
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echo "Using fragment size: $FRAGSIZE bp"
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FRAGSIZE=~{estimated_fragment_size}
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echo "Running MACS2 peak calling..."
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macs2 callpeak \

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