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validation_tasks.py
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287 lines (222 loc) · 10.3 KB
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"""Tasks and helper methods for processing RO-Crate validation."""
# Author: Alexander Hambley
# License: MIT
# Copyright (c) 2025 eScience Lab, The University of Manchester
import logging
import os
import shutil
import json
from typing import Optional
from rocrate_validator import services
from rocrate_validator.models import ValidationResult
from app.celery_worker import celery
from app.utils.minio_utils import (
fetch_ro_crate_from_minio,
update_validation_status_in_minio,
get_validation_status_from_minio,
get_minio_client,
find_rocrate_object_on_minio,
find_validation_object_on_minio
)
from app.utils.webhook_utils import send_webhook_notification
logger = logging.getLogger(__name__)
@celery.task
def process_validation_task_by_id(
minio_config: dict, crate_id: str, root_path: str, profile_name: str | None,
webhook_url: str | None, profiles_path: str | None
) -> None:
"""
Background task to process the RO-Crate validation by ID.
:param minio_config: The MinIO configuration.
:param crate_id: The ID of the RO-Crate to validate.
:param root_path: The root path containing the RO-Crate.
:param profile_name: The name of the validation profile to use. Defaults to None.
:param webhook_url: The webhook URL to send notifications to. Defaults to None.
:raises Exception: If an error occurs during the validation process.
"""
# TODO: Split try statements: (1) fetch and validate; (2) write to minio; (3) webhook
minio_client = get_minio_client(minio_config)
file_path = None
try:
# Fetch the RO-Crate from MinIO using the provided ID:
file_path = fetch_ro_crate_from_minio(minio_client, minio_config["bucket"], crate_id, root_path)
logging.info(f"Processing validation task for {file_path}")
# Perform validation:
validation_result = perform_ro_crate_validation(file_path, profile_name, profiles_path=profiles_path)
if isinstance(validation_result, str):
logging.error(f"Validation failed: {validation_result}")
# TODO: Send webhook with failure notification
raise Exception(f"Validation failed: {validation_result}")
if not validation_result.has_issues():
logging.info(f"RO Crate {crate_id} is valid.")
else:
logging.info(f"RO Crate {crate_id} is invalid.")
# Update the validation status in MinIO:
update_validation_status_in_minio(minio_client, minio_config["bucket"], crate_id, root_path, validation_result.to_json())
# TODO: Prepare the data to send to the webhook, and send the webhook notification.
if webhook_url:
send_webhook_notification(webhook_url, validation_result.to_json())
except Exception as e:
logging.error(f"Error processing validation task: {e}")
# TODO: Should we write error messages to the minio instance too?
# Send failure notification via webhook
if webhook_url:
error_data = {"profile_name": profile_name, "error": str(e)}
send_webhook_notification(webhook_url, error_data)
finally:
# Clean up the temporary file if it was created:
if file_path and os.path.exists(file_path):
if os.path.isfile(file_path):
os.remove(file_path)
elif os.path.isdir(file_path):
shutil.rmtree(file_path)
@celery.task
def process_validation_task_by_metadata(
crate_json: str, profile_name: str | None, webhook_url: str | None, profiles_path: Optional[str] = None
) -> ValidationResult | str:
"""
Background task to process the RO-Crate validation for a given json metadata string.
:param crate_json: A string containing the RO-Crate JSON metadata to validate.
:param profile_name: The name of the validation profile to use. Defaults to None.
:param webhook_url: The webhook URL to send notifications to. Defaults to None.
:param profiles_path: The path to the profiles definition directory. Defaults to None.
:raises Exception: If an error occurs during the validation process.
:todo: Replace the Crate ID with a more comprehensive system, and replace profile name with URI.
"""
try:
logging.info("Processing validation task for provided metadata string")
# Perform validation:
validation_result = perform_metadata_validation(crate_json,
profile_name,
profiles_path
)
if isinstance(validation_result, str):
logging.error(f"Validation failed: {validation_result}")
# TODO: Send webhook with failure notification
raise Exception(f"Validation failed: {validation_result}")
if not validation_result.has_issues():
logging.info("RO Crate metadata is valid.")
else:
logging.info("RO Crate metadata is invalid.")
if webhook_url:
send_webhook_notification(webhook_url, validation_result.to_json())
except Exception as e:
logging.error(f"Error processing validation task: {e}")
# Send failure notification via webhook
error_data = {"profile_name": profile_name, "error": str(e)}
if webhook_url:
send_webhook_notification(webhook_url, error_data)
finally:
if isinstance(validation_result, str):
return validation_result
else:
return validation_result.to_json()
def perform_ro_crate_validation(
file_path: str, profile_name: str | None, skip_checks_list: Optional[list] = None, profiles_path: Optional[str] = None
) -> ValidationResult | str:
"""
Validates an RO-Crate using the provided file path and profile name.
:param file_path: The path to the RO-Crate file to validate
:param profile_name: The name of the validation profile to use. Defaults to None. If None, the CRS4 validator will
attempt to determine the profile.
:param profiles_path: The path to the profiles definition directory
:param skip_checks_list: A list of checks to skip, if needed
:return: The validation result.
:raises Exception: If an error occurs during the validation process.
"""
try:
logging.info(f"Validating {file_path} with profile {profile_name}")
full_file_path = os.path.join(
os.path.dirname(
os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
),
file_path,
)
settings = services.ValidationSettings(
rocrate_uri=full_file_path,
**({"profile_identifier": profile_name} if profile_name else {}),
**({"skip_checks": skip_checks_list} if skip_checks_list else {}),
**({"profiles_path": profiles_path} if profiles_path else {})
)
return services.validate(settings)
except Exception as e:
logging.error(f"Unexpected error during validation: {e}")
return str(e)
def perform_metadata_validation(
crate_json: str, profile_name: str | None, skip_checks_list: Optional[list] = None, profiles_path: Optional[str] = None
) -> ValidationResult | str:
"""
Validates only RO-Crate metadata provided as a json string.
:param crate_json: The JSON string containing the metadata
:param profile_name: The name of the validation profile to use. Defaults to None. If None, the CRS4 validator will
attempt to determine the profile.
:param profiles_path: The path to the profiles definition directory
:param skip_checks_list: A list of checks to skip, if needed
:return: The validation result.
:raises Exception: If an error occurs during the validation process.
"""
try:
logging.info(f"Validating ro-crate metadata with profile {profile_name}")
settings = services.ValidationSettings(
**({"metadata_only": True}),
**({"metadata_dict": json.loads(crate_json)}),
**({"profile_identifier": profile_name} if profile_name else {}),
**({"skip_checks": skip_checks_list} if skip_checks_list else {}),
**({"profiles_path": profiles_path} if profiles_path else {})
)
return services.validate(settings)
except Exception as e:
logging.error(f"Unexpected error during validation: {e}")
return str(e)
def check_ro_crate_exists(
minio_client: object,
bucket_name: str,
crate_id: str,
root_path: str,
) -> bool:
"""
Checks for the existence of an RO-Crate using the provided Crate ID.
:param minio_client: The MinIO client
:param bucket_name: The MinIO bucket containing the RO-Crate.
:param crate_id: The ID of the RO-Crate to validate.
:param root_path: The root path containing the RO-Crate.
:return: Boolean indicating existence
"""
logging.info(f"Checking for existence of RO-Crate {crate_id}")
if find_rocrate_object_on_minio(crate_id, minio_client, bucket_name, root_path):
return True
else:
return False
def check_validation_exists(
minio_client: object,
bucket_name: str,
crate_id: str,
root_path: str,
) -> bool:
"""
Checks for the existence of a validation result using the provided Crate ID.
:param minio_client: The MinIO client
:param minio_bucket: The MinIO bucket containing the RO-Crate.
:param crate_id: The ID of the RO-Crate to validate.
:param root_path: The root path containing the RO-Crate.
:return: Boolean indicating existence
"""
logging.info(f"Checking for existence of RO-Crate {crate_id}")
if find_validation_object_on_minio(crate_id, minio_client, bucket_name, root_path):
return True
else:
return False
def return_ro_crate_validation(
minio_client: object,
bucket_name: str,
crate_id: str,
root_path: str,
) -> dict | str:
"""
Retrieves the validation result for an RO-Crate using the provided Crate ID.
:param minio_client: The MinIO client
:param crate_id: The ID of the RO-Crate that has been validated
:return: The validation result
"""
logging.info(f"Fetching validation result for RO-Crate {crate_id}")
return get_validation_status_from_minio(minio_client, bucket_name, crate_id, root_path)