ggtranscript/DESCRIPTION at master · dzhang32/ggtranscript · GitHub

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Package: ggtranscript
Title: Visualizing Transcript Structure and Annotation using 'ggplot2'
Version: 1.0.0
Authors@R:
    c(
    person("David", "Zhang", , "dyzhang32@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2382-8460")),
    person("Emil", "Gustavsson", , "e.gustavsson@ucl.ac.uk", role = c("aut"),
           comment = c(ORCID = "0000-0003-0541-7537")),
    person("Regina", "Reynolds", , "regina.reynolds.16@ucl.ac.uk",
           role = c("ctb"), comment = c(ORCID = "0000-0001-6470-7919")),
    person("Sonia", "Ruiz", , "s.ruiz@ucl.ac.uk",
           role = c("ctb"))
    )
Description: The goal of ggtranscript is the simplify the process of visualizing
    transcript structure and annotation. To achieve this, ggtranscript
    introduces 5 new geoms (geom_range(), geom_half_range(), geom_intron(),
    geom_junction() and geom_junction_label_repel()) as well as several helper
    functions. As a 'ggplot2' extension, ggtranscript inherits 'ggplot2's
    familiarity and flexibility, enabling users to intuitively adjust
    aesthetics, parameters, scales etc as well as complement ggtranscript geoms
    with existing 'ggplot2' geoms to create informative, publication-ready
    plots.
License: MIT + file LICENSE
URL: https://github.com/dzhang32/ggtranscript
BugReports: https://github.com/dzhang32/ggtranscript/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests:
    BiocStyle,
    covr,
    ggpubr,
    knitr,
    rmarkdown,
    rtracklayer,
    sessioninfo,
    testthat (>= 3.0.0),
    vdiffr
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends:
    R (>= 2.10)
LazyData: true
Imports:
    dplyr,
    GenomicRanges,
    ggplot2,
    magrittr,
    rlang,
    S4Vectors,
    GenomeInfoDb,
    ggrepel
Collate:
    'add_exon_number.R'
    'add_utr.R'
    'data.R'
    'geom_range.R'
    'geom_half_range.R'
    'geom_intron.R'
    'geom_junction.R'
    'geom_junction_label_repel.R'
    'ggtranscript-package.R'
    'globals.R'
    'shorten_gaps.R'
    'to_diff.R'
    'to_intron.R'
    'utils.R'