gffutils/pyproject.toml at master · daler/gffutils · GitHub

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[build-system]
# setuptools 77.0.3 is when support for plain text values for `license` key,
# used below, is supported.
requires = ["setuptools>=77.0.3"]
build-backend = "setuptools.build_meta"

[project]
name = "gffutils"
version = "0.14"
readme = { file = "README.rst", content-type = "text/x-rst" }
description = "Work with GFF and GTF files in a flexible database framework"
authors = [
  { name = "Ryan Dale", email = "ryan.dale@nih.gov" },
]
license = "MIT"
license-files = ["LICENSE"]
requires-python = ">=3.8"
dependencies = [
  "pyfaidx>=0.5.5.2",
  "argh>=0.26.2",
  "argcomplete>=1.9.4",
  "simplejson",
]
classifiers = [
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.8",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Topic :: Software Development :: Libraries :: Python Modules",
]
urls = { Homepage = "https://github.com/daler/gffutils" }

[project.optional-dependencies]
test = [
  "pytest",
]
optional = [
  "biopython>=1.73",
  "pybedtools>=0.8.0",
]
docs = [
  "make",
  "numpydoc",
  "sphinx",
  "sphinx_rtd_theme",
  "sphinx-autoapi",
]

[tool.pytest.ini_options]
addopts = "-v --doctest-modules"
testpaths = ["gffutils"]
markers = [
  "slow: marks tests that are slow to run",
]

[tool.setuptools]
include-package-data = true
script-files = ["gffutils/scripts/gffutils-cli"]

[tool.setuptools.packages.find]
include = ["gffutils", "gffutils.*"]

[tool.setuptools.package-data]
gffutils = ["test/data/*"]