ExploreModelMatrix/DESCRIPTION at devel · csoneson/ExploreModelMatrix · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
Package: ExploreModelMatrix
Type: Package
Title: Graphical Exploration of Design Matrices
Version: 1.25.0
Date: 2026-03-16
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"),
    email = "charlottesoneson@gmail.com",
    comment = c(ORCID = "0000-0003-3833-2169")),
    person("Federico", "Marini", role = "aut",
    email = "marinif@uni-mainz.de",
    comment = c(ORCID = "0000-0003-3252-7758")),
    person("Michael", "Love", role = "aut",
    email = "michaelisaiahlove@gmail.com",
    comment = c(ORCID = "0000-0001-8401-0545")),
    person("Florian", "Geier", role = "aut",
    email = "florian.geier@unibas.ch",
    comment = c(ORCID = "0000-0002-9076-9264")),
    person("Michael", "Stadler", role = "aut",
    email = "michael.stadler@fmi.ch",
    comment = c(ORCID = "0000-0002-2269-4934")))
Description: Given a sample data table and a design formula,
    ExploreModelMatrix generates an interactive application
    for exploration of the resulting design matrix.
    This can be helpful for interpreting model coefficients and
    constructing appropriate contrasts in (generalized) linear
    models. Static visualizations can also be generated.
License: MIT + file LICENSE
Encoding: UTF-8
Imports:
    shiny (>= 1.5.0),
    shinydashboard,
    DT,
    cowplot,
    utils,
    dplyr,
    magrittr,
    tidyr,
    ggplot2,
    stats,
    methods,
    rintrojs,
    scales,
    tibble,
    MASS,
    limma,
    S4Vectors,
    shinyjs,
    rlang
RoxygenNote: 7.3.3
Suggests:
    testthat (>= 2.1.0),
    knitr,
    rmarkdown,
    htmltools,
    BiocStyle
VignetteBuilder: knitr
URL: https://github.com/csoneson/ExploreModelMatrix
BugReports: https://github.com/csoneson/ExploreModelMatrix/issues
biocViews: ExperimentalDesign, Regression, DifferentialExpression, ShinyApps