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DESCRIPTION
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Package: kmap
Type: Package
Title: Generate mappable regions of the genome for a given K-mer length
Version: 0.1.0
Author: Deivydas Giedrimas, Pariksheet Nanda
Maintainer: Deivydas Giedrimas <giedrimd@gmail.com>
Description: Knowing where reads can uniquely map in the genome
is useful for nascent RNA assays,
both in statistical calculations and to make predictions.
kmap takes two inputs: a genome and the read length, K.
The output is automatically cached on disk.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports:
BSgenome,
BiocFileCache,
BiocParallel,
Biostrings,
digest,
futile.logger,
GenomeInfoDb,
GenomicAlignments,
GenomicRanges,
IRanges,
QuasR,
S4Vectors,
methods,
plyr,
rtracklayer,
Suggests:
lintr,
lubridate,
testthat,
BSgenome.Ecoli.NCBI.20080805,
BSgenome.Scerevisiae.UCSC.sacCer2,
RoxygenNote: 6.0.1